TCONS_00069110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069110
Unique NameTCONS_00069110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069110 ID=TCONS_00069110|Name=TCONS_00069110|organism=Clytia hemisphaerica|type=transcript|length=366bp
AATAACACTGATGTTCAATTTCTACAAAACGACCTTGATGTGGTGTATCA
ATGGACATCATTAAACAACATGCAGCTCAATGGCTTGAAGTTTGAACATC
ttaaatatggaaaaaatgaagaactaaAAGAACACTCAAGTTACCTCTCA
TACACTGGCTCTCCTATCGAAACCAAGATGGACGTGAAGGATTTAGGAGT
CACTCTGGATGTTAACATGACATACAGCAAACACAATCACAAACCAGATC
GAGAAAGTCAAAAGTATAATTGCTTGGATCCATCGAAAGTTCAAAACAAG
AGATTGTCAAGTAATGCTAACTCTTTGGAAGTCACTGGTACTACCACACA
TTGACTATTGCTCCCA
Run BLAST on NCBI

protein sequence of TCONS_00069110-protein

>TCONS_00069110-protein ID=TCONS_00069110-protein|Name=TCONS_00069110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
NNTDVQFLQNDLDVVYQWTSLNNMQLNGLKFEHLKYGKNEELKEHSSYLS
YTGSPIETKMDVKDLGVTLDVNMTYSKHNHKPDRESQKYNCLDPSKVQNK
RLSSNANSLEVTGTTTH
Run BLAST on NCBI

transcript from alignment at scaffold_493:32439..32804

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069110 ID=TCONS_00069110|Name=TCONS_00069110|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at scaffold_493:32439..32804 (Clytia hemisphaerica)
TGGGAGCAATAGTCAATGTGTGGTAGTACCAGTGACTTCCAAAGAGTTAG
CATTACTTGACAATCTCTTGTTTTGAACTTTCGATGGATCCAAGCAATTA
TACTTTTGACTTTCTCGATCTGGTTTGTGATTGTGTTTGCTGTATGTCAT
GTTAACATCCAGAGTGACTCCTAAATCCTTCACGTCCATCTTGGTTTCGA
TAGGAGAGCCAGTGTATGAGAGGTAACTTGAGTGTTCTTttagttcttca
ttttttccatatttaaGATGTTCAAACTTCAAGCCATTGAGCTGCATGTT
GTTTAATGATGTCCATTGATACACCACATCAAGGTCGTTTTGTAGAAATT
GAACATCAGTGTTATT

Coding sequence (CDS) from alignment at scaffold_493:32439..32804

>TCONS_00069110 ID=TCONS_00069110|Name=TCONS_00069110|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_493:32439..32804 (Clytia hemisphaerica)
TCAATGTGTGGTAGTACCAGTGACTTCCAAAGAGTTAGCATTACTTGACA
ATCTCTTGTTTTGAACTTTCGATGGATCCAAGCAATTATACTTTTGACTT
TCTCGATCTGGTTTGTGATTGTGTTTGCTGTATGTCATGTTAACATCCAG
AGTGACTCCTAAATCCTTCACGTCCATCTTGGTTTCGATAGGAGAGCCAG
TGTATGAGAGGTAACTTGAGTGTTCTTttagttcttcattttttccatat
ttaaGATGTTCAAACTTCAAGCCATTGAGCTGCATGTTGTTTAATGATGT
CCATTGATACACCACATCAAGGTCGTTTTGTAGAAATTGAACATCAGTGT
TATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043069XLOC_043069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069110-exon-scaffold_493-1491911889:32439..32804TCONS_00069110-exon-scaffold_493-1491911889:32439..32804Clytia hemisphaericaexon
TCONS_00069110-exon-scaffold_493-1510915933:32439..32804TCONS_00069110-exon-scaffold_493-1510915933:32439..32804Clytia hemisphaericaexon
TCONS_00069110-exon-scaffold_493-1575043694:32439..32804TCONS_00069110-exon-scaffold_493-1575043694:32439..32804Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069110-proteinTCONS_00069110-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_493supercontigscaffold_493:32439..32804 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.439803	1.9495	1.49766	1.34666	2.32328	2.05441	1.34127	3.26374	0.931644	4.49807	1.17223	2.64126	1.43036	3.49369	0.850671	1.12289	0.47567	1.04637	0.835055	0.973975	0.664532	0.824586	0.324044	0.550627	2.98264	4.97444	0	0.444768	1.65177	1.06247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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