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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069088 ID=TCONS_00069088|Name=TCONS_00069088|organism=Clytia hemisphaerica|type=transcript|length=3320bpRun BLAST on NCBI protein sequence of TCONS_00069088-protein >TCONS_00069088-protein ID=TCONS_00069088-protein|Name=TCONS_00069088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp MNDERGPAPPVRMASQKGPNDSGQNMGSKPLPIAPMQDEKKKKGLKIFTQRun BLAST on NCBI transcript from alignment at scaffold_493:289633..312005+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069088 ID=TCONS_00069088|Name=TCONS_00069088|organism=Clytia hemisphaerica|type=transcript|length=22373bp|location=Sequence derived from alignment at scaffold_493:289633..312005+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_493:289633..312005+ >TCONS_00069088 ID=TCONS_00069088|Name=TCONS_00069088|organism=Clytia hemisphaerica|type=CDS|length=21756bp|location=Sequence derived from alignment at scaffold_493:289633..312005+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069088 vs. Swiss-Prot (Human)
Match: PAK3 (Serine/threonine-protein kinase PAK 3 OS=Homo sapiens GN=PAK3 PE=1 SV=2) HSP 1 Score: 681.789 bits (1758), Expect = 0.000e+0 Identity = 352/549 (64.12%), Postives = 411/549 (74.86%), Query Frame = 3
Query: 321 NDERGPAPPVRMASQKGPNDSGQNMGSKPLPIAPMQDEKKKKGLKIF------TQGISGKKKPEISLPTQFEHTMHVGFDPHTGEFT---------------GMPESWSKLLQVANISTAEQKQNPQAVIDVLKFYDSSTKEKEDDKFMNFNKGSSPTYGTQTSGPQTPEDSLEEP--------RYNKPTEAQQRVEAPPALPARPEHTKSRFI--TAEQLAGSGV--KAAPPPKPENTSN-----KPTQAVKRRKMTDEEIMAKLRTIVTVGDPKKKYTKFEKIGQGASGVVFTAIEIATGNEVAIKQMNLSQQPKKELIINEILVMRENKHPNIVNYVDSYLVGEELWVVMEFLAGGSLTDVVTETCMDEGQIASVSRECLQALDFLHGNGVIHRDIKSDNILLGLEGTVKLTDFGFCATITPEEQKRSTMVGTPYWMAPEVVTRKQYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQHPERLSPVFRDFLNKTLEMDVDKRPSARELLMHPFLRQAKPLSSLQPLIMAAKEA 1853
N+E+ PAPP+RM S + S N SKPLP+AP + KK + IF T K++PEISLP+ FEHT+HVGFD TGEFT G+PE W++LLQ +NI+ EQK+NPQAV+DVLKFYDS + + K+M+F G +G + P + + + E P + E + E PP + RPEHTKS + E +A V K PP EN ++ + K+ KMTDEEI+ KLR+IV+VGDPKKKYT+FEKIGQGASG V+TA++IATG EVAIKQMNL QQPKKELIINEILVMRENK+PNIVNY+DSYLVG+ELWVVME+LAGGSLTDVVTETCMDEGQIA+V RECLQALDFLH N VIHRDIKSDNILLG++G+VKLTDFGFCA ITPE+ KRSTMVGTPYWMAPEVVTRK YGPKVDIWSLGIMAIEM+EGEPPYLNENPLRALYLIATNGTPELQ+PERLS VFRDFLN+ LEMDVD+R SA+ELL HPFL+ AKPLSSL PLI+AAKEA
Sbjct: 7 NEEKPPAPPLRMNSNNR-DSSALNHSSKPLPMAPEEKNKKARLRSIFPGGGDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTPDLYGSQMCPGKLPEGIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYDSK-ETVNNQKYMSFTSGDKSAHGYIAAHPSSTKTASEPPLAPPVSEEEDEEEEEEEDENEPPPVIAPRPEHTKSIYTRSVVESIASPAVPNKEVTPPSAENANSSTLYRNTDRQRKKSKMTDEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTALDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLKLAKPLSSLTPLIIAAKEA 553 The following BLAST results are available for this feature:
BLAST of TCONS_00069088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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