TCONS_00069086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069086
Unique NameTCONS_00069086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069086 ID=TCONS_00069086|Name=TCONS_00069086|organism=Clytia hemisphaerica|type=transcript|length=487bp
gtttcagataaataataaaaatgaaatcaatgtTTAGACCAAGGGATTAT
GCATCAAAGCACTCAAACTTATTTTCTCAACAGcgAAGGCTGCGGCATTT
AACATGCATCATTGGAAGGAATATTGATCCAAATTTAGTACCTATTTCCA
AATCTATGAAAAGCTCATTGTTGATGCTTTATTTTACAATCCATGATGCT
AGTGACTTGTCCACAGTGTTTTACAAAAGTGAGATTATTGAGAATACATT
GAATCCAAATTGGAAGGAATTTGACAATGAGACATTTTACAAATCGCCAG
CTTATAATACATTATCTGAAATAACTGTCATCATTTGGGGTGCTAGAAAA
CTTGGTCAATTTCGTGCCATCTCGAGGAGTGATATTAACTTTTCTGGACT
GGTATTCTTGCAAGAAAATCTGAGGAAACATGAAGGCCAGTATGAAAGTA
ATTGTttactttttcaaatgtttggaGGATATTATGC
Run BLAST on NCBI

transcript from alignment at scaffold_493:259497..261139+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069086 ID=TCONS_00069086|Name=TCONS_00069086|organism=Clytia hemisphaerica|type=transcript|length=1643bp|location=Sequence derived from alignment at scaffold_493:259497..261139+ (Clytia hemisphaerica)
gtttcagataaataataaaaatgaaatcaatgtTTAGACCAAGGGATTAT
GCATCAAAGCACTCAAACTTATTTTCTCAACAGGTAGTGTTTATTTGCAA
AGAATGACCTTTGTTAGATAATGAAAACTTTCCTGGGACTAGCTATTTTG
AACAACAATTATACTTATCTTATTAAGATCATTCAGCATCCTAACCTTTT
ATGGCTGTTTGATGCATATTTAAAAGAAATCTGAAGAAATACTTaccttg
ttttcattttagcgAAGGCTGCGGCATTTAACATGCATCATTGGAAGGAA
TATTGATCCAAATTTAGTACCTATTTCCAAATCTATGAAAAGCTCATTGT
TGATGCTTTATTTTACAATCCATGATGCTAGTGACTTGTCCACAGgttat
ttcaaatttctttaactTGATTCTATCAAACTGGTGTTTTATGACTCCTT
TCAGCCATGTTAACAAATTATGTTCATTGATTGAACTTTATAATTAAGGT
AGCTTGACAAAATAACTTGATTACTTAAAATTTACTTCACTTCTCCCCAA
AAGAAATTAATCAGGGACTAGGTACAACTGTTATAAAGCatgaatttttg
attatttaatCTCATTTAGTGAAAATGCATAACGTTATATTATTTTCTGa
ctgatatttttcatttttctccttattgctatctaactttcatcatcagg
taggtccgtTCAGCATCTaacttttccttttcattttagTGTTTTACAAA
AGTGAGATTATTGAGAATACATTGGTGCGTATgaattttcatgtattttt
ttatattctCGAATTTAGCTTATCATGATGATTGACATTGCCTAAATGTT
TGATGGTGCATTTATGATTTTGTTTCATATTACCTTTTAGAATCCAAATT
GGAAGGAATTTGACAATGAGACATTTTACAAATCGCCAGCTTATAATACA
TTATGTATCTTTTCTATATTAACAATATAGTATCAATTTTCCTGAGTAAA
CATTTTTGCTTTTCACGAATGTACCTGAATGTGTGTGAATCCAAATATGT
GCAAGCTATTTAGATTTCAAGTTTGACTTGAGTCCTAAATACTCTTCCAT
TTCTTCTGGAACAGACCAaaacattttagttttttgctaGCTACTCTAAT
AAAGTTTTCCTTAACATGACTTAATAAATAGCTGAAATAACTGTCATCAT
TTGGGGTGCTAGAAAACTTGGTCAATTTCGTGCCATCTCGAGGAGTGATA
TTAACTTTTCTGGACTGGTATTCTTGCAAGAAAATGTAAGACTTATTTGA
ATTGATTTCtctgaaaatttgctgatggCAGAAAGTGGTTTGCAACATAT
TGAATACAAGATAAATCCACATTGGGTGTTTTAAAAAAGAGCTTGgataa
aacaagaaaaatactGATTTTGCTTTAAACGCCAGGGCACAGGTGTGAAC
AGAGTAATAATAGTGCATTACATTGCAATAGTTATAATAAACTATTGTAC
ACCAACTACCTACTTTAATGAAAGCTTTTCTTTATATCTTATTGAAAATA
TTGTTATCTTTTTTACTTCTTAAAGCTGAGGAAACATGAAGGCCAGTATG
AAAGTAATTGTttactttttcaaatgtttggaGGATATTATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043052XLOC_043052Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069086-exon-scaffold_493-1491911889:259497..259579TCONS_00069086-exon-scaffold_493-1491911889:259497..259579Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1510915933:259497..259579TCONS_00069086-exon-scaffold_493-1510915933:259497..259579Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1575043694:259497..259579TCONS_00069086-exon-scaffold_493-1575043694:259497..259579Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1491911889:259759..259891TCONS_00069086-exon-scaffold_493-1491911889:259759..259891Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1510915933:259759..259891TCONS_00069086-exon-scaffold_493-1510915933:259759..259891Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1575043694:259759..259891TCONS_00069086-exon-scaffold_493-1575043694:259759..259891Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1491911889:260236..260270TCONS_00069086-exon-scaffold_493-1491911889:260236..260270Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1510915933:260236..260270TCONS_00069086-exon-scaffold_493-1510915933:260236..260270Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1575043694:260236..260270TCONS_00069086-exon-scaffold_493-1575043694:260236..260270Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1491911889:260387..260450TCONS_00069086-exon-scaffold_493-1491911889:260387..260450Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1510915933:260387..260450TCONS_00069086-exon-scaffold_493-1510915933:260387..260450Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1575043694:260387..260450TCONS_00069086-exon-scaffold_493-1575043694:260387..260450Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1491911889:260678..260781TCONS_00069086-exon-scaffold_493-1491911889:260678..260781Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1510915933:260678..260781TCONS_00069086-exon-scaffold_493-1510915933:260678..260781Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1575043694:260678..260781TCONS_00069086-exon-scaffold_493-1575043694:260678..260781Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1491911889:261072..261139TCONS_00069086-exon-scaffold_493-1491911889:261072..261139Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1510915933:261072..261139TCONS_00069086-exon-scaffold_493-1510915933:261072..261139Clytia hemisphaericaexon
TCONS_00069086-exon-scaffold_493-1575043694:261072..261139TCONS_00069086-exon-scaffold_493-1575043694:261072..261139Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_493supercontigscaffold_493:259497..261139 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.67	0	0.2677	0.252826	7.02028e-05	0	0	0	3.2112e-08	0	1.1011	0	0	0	0	0	0	0	0	0	1.71398	2.96536	2.00341	2.7206	0	0	1.35284	0.654681	0.889787	2.20089
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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