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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069080 ID=TCONS_00069080|Name=TCONS_00069080|organism=Clytia hemisphaerica|type=transcript|length=1203bp
TTGTTATGCAACAAAATGAAATTATCGTAAACgcgaataataataataaa
gaataTGATGACATAAGGTCGATTTCCCTAAAGTTTATTGATCCTTTGGG
ACCATTGGACCATGTAACTGACGACATGGCCCGTCACGCAAACGAGATAT
ACCAGTCTGCAAAAGAAGCTTTCAATCGAGCTGAGAAAGAGAAAGAAACC
TTATTTTCTTTTGCGTTTGACGATGGTACTGTGTTGGAGATTTACAGAGA
TCAATTCCATATCGTCAATGCTGATCAAAGTAAATATGACAAGCCAATAA
GGAAGATGAACTCACTTTGGAAAAATACAATCAAACCCCTTCACAGAAAC
AATTTCGTCATCAAAGATATTATTAGCAGCGTTACACAACAAGGTCAAAT
CTCACGACATGAATCAACCGGTCTAGTCCACAATTTATTGCGTGGTCCAC
TAAAAGAAGCCAGTATGGTTAAACTTAATGATGGAGTCCAAATATTCCGA
AAATCATATCCCGATTTATTGGAAAATCCATTTTTCCATGCTCGAATTCC
GATTCCGTTTGGTGAAGTAGTGGATATTCGCACCCCTGGGACCAACGTGA
GAAGAGATGAACAGGCTCAGCCATCGAATTGCTTAATGtcatgatttcaa
ttttttttctctaagaTTATGAACAAGGTTCCAGACAAATGGTGCGAGAT
GATATGAGTGGAAAGTATCTGGAAGGACTTAATTTGAAGTAACTTAACAA
ATCCGACTAGTAGGGGGTAAAGCTCCCATTGCACAGTCAACTCTTTGTAA
TTCGATGAACCCCCGTAATTCGATGAACCTCCATAATTCGAATTTCTCTG
taaattcgaactaaaacagtGGCCTCCTCAGATGGAAAGCCCTTTAAAGT
TACCTTTATAatccgaatctttctctaattagAAGAAAATCATtggcccc
ttgaagatcgaattagagagagtcaactgcaATATCTGAATTCTGCAGGC
TACGTTGCTCAATTCTCAAAACACAAGGGTGAATCTGAAGGTCTGAAAAC
TGATGGTAAAATTCTTGCCCTGGAAGTCAAAGAAATCAAAGTATTAAAAT
TACAAACATTATTGTTTTTACATAAACATATattattaaaatgaaaattt
tactttccaTTATCACTCCTCAAGCTTTGAAATGTGAAGATTTCTAATCC
GGC Run BLAST on NCBI protein sequence of TCONS_00069080-protein >TCONS_00069080-protein ID=TCONS_00069080-protein|Name=TCONS_00069080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
VMQQNEIIVNANNNNKEYDDIRSISLKFIDPLGPLDHVTDDMARHANEIY
QSAKEAFNRAEKEKETLFSFAFDDGTVLEIYRDQFHIVNADQSKYDKPIR
KMNSLWKNTIKPLHRNNFVIKDIISSVTQQGQISRHESTGLVHNLLRGPL
KEASMVKLNDGVQIFRKSYPDLLENPFFHARIPIPFGEVVDIRTPGTNVR
RDEQAQPSNCLMS Run BLAST on NCBI transcript from alignment at scaffold_493:210309..211706+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069080 ID=TCONS_00069080|Name=TCONS_00069080|organism=Clytia hemisphaerica|type=transcript|length=1398bp|location=Sequence derived from alignment at scaffold_493:210309..211706+ (Clytia hemisphaerica)
TTGTTATGCAACAAAATGAAATTATCGTAAACgcgaataataataataaa
gaataTGATGACATAAGGTCGATTTCCCTAAAGTTTATTGATCCTTTGGG
ACCATTGGACCATGTAACTGACGACATGGCCCGTCACGCAAACGAGATAT
ACCAGTCTGCAAAAGAAGCTTTCAATCGAGCTGAGAAAGAGAAAGAAACC
TTATTTTCTTTTGCGTTTGACGATGGTACTGTGTTGGAGATTTACAGAGA
TCAATTCCATATCGTCAATGCTGATCAAAGTAAATATGACAAGCCAATAA
GgtaattatcttttttaacGAGCCAAGTTTCAATGAAACCAACAAGATTT
ATCATTTTGTGGCGCAATTTCTTTTCGCCAAATACAGGGTGTCCTGAGaa
aagtcctgtgtcagacCACTTTtgtaagaagaaaaaaatcgtttGTGTAT
CATAAAATCTACATCTTATTATCTAATAATCTCGGTATATTTATAGGAAG
ATGAACTCACTTTGGAAAAATACAATCAAACCCCTTCACAGAAACAATTT
CGTCATCAAAGATATTATTAGCAGCGTTACACAACAAGGTCAAATCTCAC
GACATGAATCAACCGGTCTAGTCCACAATTTATTGCGTGGTCCACTAAAA
GAAGCCAGTATGGTTAAACTTAATGATGGAGTCCAAATATTCCGAAAATC
ATATCCCGATTTATTGGAAAATCCATTTTTCCATGCTCGAATTCCGATTC
CGTTTGGTGAAGTAGTGGATATTCGCACCCCTGGGACCAACGTGAGAAGA
GATGAACAGGCTCAGCCATCGAATTGCTTAATGtcatgatttcaattttt
tttctctaagaTTATGAACAAGGTTCCAGACAAATGGTGCGAGATGATAT
GAGTGGAAAGTATCTGGAAGGACTTAATTTGAAGTAACTTAACAAATCCG
ACTAGTAGGGGGTAAAGCTCCCATTGCACAGTCAACTCTTTGTAATTCGA
TGAACCCCCGTAATTCGATGAACCTCCATAATTCGAATTTCTCTGtaaat
tcgaactaaaacagtGGCCTCCTCAGATGGAAAGCCCTTTAAAGTTACCT
TTATAatccgaatctttctctaattagAAGAAAATCATtggccccttgaa
gatcgaattagagagagtcaactgcaATATCTGAATTCTGCAGGCTACGT
TGCTCAATTCTCAAAACACAAGGGTGAATCTGAAGGTCTGAAAACTGATG
GTAAAATTCTTGCCCTGGAAGTCAAAGAAATCAAAGTATTAAAATTACAA
ACATTATTGTTTTTACATAAACATATattattaaaatgaaaattttactt
tccaTTATCACTCCTCAAGCTTTGAAATGTGAAGATTTCTAATCCGGC Coding sequence (CDS) from alignment at scaffold_493:210309..211706+ >TCONS_00069080 ID=TCONS_00069080|Name=TCONS_00069080|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_493:210309..211706+ (Clytia hemisphaerica)
GTTATGCAACAAAATGAAATTATCGTAAACgcgaataataataataaaga
ataTGATGACATAAGGTCGATTTCCCTAAAGTTTATTGATCCTTTGGGAC
CATTGGACCATGTAACTGACGACATGGCCCGTCACGCAAACGAGATATAC
CAGTCTGCAAAAGAAGCTTTCAATCGAGCTGAGAAAGAGAAAGAAACCTT
ATTTTCTTTTGCGTTTGACGATGGTACTGTGTTGGAGATTTACAGAGATC
AATTCCATATCGTCAATGCTGATCAAAGTAAATATGACAAGCCAATAAGG
AAGATGAACTCACTTTGGAAAAATACAATCAAACCCCTTCACAGAAACAA
TTTCGTCATCAAAGATATTATTAGCAGCGTTACACAACAAGGTCAAATCT
CACGACATGAATCAACCGGTCTAGTCCACAATTTATTGCGTGGTCCACTA
AAAGAAGCCAGTATGGTTAAACTTAATGATGGAGTCCAAATATTCCGAAA
ATCATATCCCGATTTATTGGAAAATCCATTTTTCCATGCTCGAATTCCGA
TTCCGTTTGGTGAAGTAGTGGATATTCGCACCCCTGGGACCAACGTGAGA
AGAGATGAACAGGCTCAGCCATCGAATTGCTTAATGtcatgaGTTATGCA
ACAAAATGAAATTATCGTAAACgcgaataataataataaagaataTGATG
ACATAAGGTCGATTTCCCTAAAGTTTATTGATCCTTTGGGACCATTGGAC
CATGTAACTGACGACATGGCCCGTCACGCAAACGAGATATACCAGTCTGC
AAAAGAAGCTTTCAATCGAGCTGAGAAAGAGAAAGAAACCTTATTTTCTT
TTGCGTTTGACGATGGTACTGTGTTGGAGATTTACAGAGATCAATTCCAT
ATCGTCAATGCTGATCAAAGTAAATATGACAAGCCAATAAGGAAGATGAA
CTCACTTTGGAAAAATACAATCAAACCCCTTCACAGAAACAATTTCGTCA
TCAAAGATATTATTAGCAGCGTTACACAACAAGGTCAAATCTCACGACAT
GAATCAACCGGTCTAGTCCACAATTTATTGCGTGGTCCACTAAAAGAAGC
CAGTATGGTTAAACTTAATGATGGAGTCCAAATATTCCGAAAATCATATC
CCGATTTATTGGAAAATCCATTTTTCCATGCTCGAATTCCGATTCCGTTT
GGTGAAGTAGTGGATATTCGCACCCCTGGGACCAACGTGAGAAGAGATGA
ACAGGCTCAGCCATCGAATTGCTTAATGtcatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069080-exon-scaffold_493-1491911889:210309..210609 | TCONS_00069080-exon-scaffold_493-1491911889:210309..210609 | Clytia hemisphaerica | exon |
| TCONS_00069080-exon-scaffold_493-1510915933:210309..210609 | TCONS_00069080-exon-scaffold_493-1510915933:210309..210609 | Clytia hemisphaerica | exon |
| TCONS_00069080-exon-scaffold_493-1575043694:210309..210609 | TCONS_00069080-exon-scaffold_493-1575043694:210309..210609 | Clytia hemisphaerica | exon |
| TCONS_00069080-exon-scaffold_493-1491911889:210805..211706 | TCONS_00069080-exon-scaffold_493-1491911889:210805..211706 | Clytia hemisphaerica | exon |
| TCONS_00069080-exon-scaffold_493-1510915933:210805..211706 | TCONS_00069080-exon-scaffold_493-1510915933:210805..211706 | Clytia hemisphaerica | exon |
| TCONS_00069080-exon-scaffold_493-1575043694:210805..211706 | TCONS_00069080-exon-scaffold_493-1575043694:210805..211706 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_493 | supercontig | scaffold_493:210309..211706 + |
Blast
The following BLAST results are available for this feature:
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