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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069050 ID=TCONS_00069050|Name=TCONS_00069050|organism=Clytia hemisphaerica|type=transcript|length=1607bp
CCTTGTtataaaattgaagaaagaatAAATTTGCTCCTTAGCGAAAGTAT
ACATCTTATTCCTTTGTAAGAGAACAAATTATCTGTCAACACGAAAAGAA
CAAATAATTCATCCTATAAAGGAACAAAGGAACAATTGAAACACAATTTT
GAAATTGGAGTTTAAACCATTCCTTATTGAACAGTTTACTCCTTTATGAA
AAACAACACAGAACAAAGACATCCTTAGGGATCAAAGAGTTCTTCAGATA
AAGGTTCCTTGCGAGTTCCTTAAATACAAGAACAGACCAGAAATTAACTA
CAGTAAGGTAATTTTTGTCGAGTAACACATGAACAATATCTAGATTCAAA
CAGTTCACCGTGCTGTTTGCTGTATGGGTAAAACTATGGGATATGTCGTC
TCCAGATGACAGCATGTGGTACATGTATGCTGCTATTGATGGATTTTTGG
TCGCCAGGTGGAGAAGTGACAATTTTCGCTTGTTGATGTGAGTGGTAACG
TCCGGGAGATTGTAGATGGTATTCAAGAGGTTACGTGATTTCTTGGATAC
GCCAAAGAGTGCCTTTAAACAAATACGAGCCTGTGTGTTTAATAGGACTG
CATCTGACTTGTTGAGCTCAACGAGTTCGAGACCATACTTAGGTACAACG
ATGGGAGTAAATAGAGTCACAATCTGGTTTGGATGACATTTACGAATACC
AGCACTAATAAGGGAGGTAGCCACTGACCACATGCATGCTATGCGATCTA
ACATATGTCTTTTAAGAGTAAGAATGTTCTTGTCAATCTCCCACTGAAAG
CCAAGGTGTTTTAGGGTCTCCTGCTTCTGGACGATAGTGTTGTCGATCCG
GATAACAGGATTTCTGATTGGAGTTTTGCCAGATATTGTAAACTGGGTCT
TGATCTGATTGTACCTGAGACAGTTGCTGACACCGTGATCGATACAATGG
TCAATCATCATTTGAAGGTGAGTGAGAGTAGGACTCATTAATATGATGTC
GTCAGCATAAGCTATGATACCTGTGTGGAGATTGTTGGGGAGGAATGTTC
CAATCTGGAGAGACTTCACTCGGAGAAGGAGATCTTCAATGTAGATGCTG
TACAGAAAGGGAGAAAGGATGCTTCCTTGACGAACCCCTTGAGTCAATAA
AAGTTCTTTCGAGTAATGGGCAGCATAGTGAACAATGGCAGACCCATTCA
GATAGAGTTTTATCAGCATTGATAGGACCTGGTTTGGAATGTCCCTATTT
TGTAGTTTGCAGAAAAGGGTGTGCCAATTGCATGAATCAAACGCTTTTTC
AGCATCTAGACTGCATACGTATACGGAACTGCCTCGATTATTGTAGTATT
TCAAAGTGTCTGAGATCAATAGTTCTGCGTGTAGGGTGGAGGAACCAGCT
ACAAAACCAAATTGAGAGTCTGTGTGGTTGGAGATGTCTGGGCATTTGAT
CAATACAACTAGTTCTATTACTTTAGTCATAATTGGGATAAGGCTAATCC
CACGATAGTTATTAGGGTCATTTAATGATTTCTTGTAGGATTTAACGAGT
GGAATAATAATTGAAGTGCCTAGTTGGCTTGGTAAACGTGATGacgaaaa
aagtttg Run BLAST on NCBI protein sequence of TCONS_00069050-protein >TCONS_00069050-protein ID=TCONS_00069050-protein|Name=TCONS_00069050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp
KLFSSSRLPSQLGTSIIIPLVKSYKKSLNDPNNYRGISLIPIMTKVIELV
VLIKCPDISNHTDSQFGFVAGSSTLHAELLISDTLKYYNNRGSSVYVCSL
DAEKAFDSCNWHTLFCKLQNRDIPNQVLSMLIKLYLNGSAIVHYAAHYSK
ELLLTQGVRQGSILSPFLYSIYIEDLLLRVKSLQIGTFLPNNLHTGIIAY
ADDIILMSPTLTHLQMMIDHCIDHGVSNCLRYNQIKTQFTISGKTPIRNP
VIRIDNTIVQKQETLKHLGFQWEIDKNILTLKRHMLDRIACMWSVATSLI
SAGIRKCHPNQIVTLFTPIVVPKYGLELVELNKSDAVLLNTQARICLKAL
FGVSKKSRNLLNTIYNLPDVTTHINKRKLSLLHLATKNPSIAAYMYHMLS
SGDDISHSFTHTANSTVNCLNLDIVHVLLDKNYLTVVNFWSVLVFKELAR
NLYLKNSLIPKDVFVLCCFS Run BLAST on NCBI transcript from alignment at scaffold_492:119358..120964 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069050 ID=TCONS_00069050|Name=TCONS_00069050|organism=Clytia hemisphaerica|type=transcript|length=1607bp|location=Sequence derived from alignment at scaffold_492:119358..120964 (Clytia hemisphaerica)
caaacttttttcgtCATCACGTTTACCAAGCCAACTAGGCACTTCAATTA
TTATTCCACTCGTTAAATCCTACAAGAAATCATTAAATGACCCTAATAAC
TATCGTGGGATTAGCCTTATCCCAATTATGACTAAAGTAATAGAACTAGT
TGTATTGATCAAATGCCCAGACATCTCCAACCACACAGACTCTCAATTTG
GTTTTGTAGCTGGTTCCTCCACCCTACACGCAGAACTATTGATCTCAGAC
ACTTTGAAATACTACAATAATCGAGGCAGTTCCGTATACGTATGCAGTCT
AGATGCTGAAAAAGCGTTTGATTCATGCAATTGGCACACCCTTTTCTGCA
AACTACAAAATAGGGACATTCCAAACCAGGTCCTATCAATGCTGATAAAA
CTCTATCTGAATGGGTCTGCCATTGTTCACTATGCTGCCCATTACTCGAA
AGAACTTTTATTGACTCAAGGGGTTCGTCAAGGAAGCATCCTTTCTCCCT
TTCTGTACAGCATCTACATTGAAGATCTCCTTCTCCGAGTGAAGTCTCTC
CAGATTGGAACATTCCTCCCCAACAATCTCCACACAGGTATCATAGCTTA
TGCTGACGACATCATATTAATGAGTCCTACTCTCACTCACCTTCAAATGA
TGATTGACCATTGTATCGATCACGGTGTCAGCAACTGTCTCAGGTACAAT
CAGATCAAGACCCAGTTTACAATATCTGGCAAAACTCCAATCAGAAATCC
TGTTATCCGGATCGACAACACTATCGTCCAGAAGCAGGAGACCCTAAAAC
ACCTTGGCTTTCAGTGGGAGATTGACAAGAACATTCTTACTCTTAAAAGA
CATATGTTAGATCGCATAGCATGCATGTGGTCAGTGGCTACCTCCCTTAT
TAGTGCTGGTATTCGTAAATGTCATCCAAACCAGATTGTGACTCTATTTA
CTCCCATCGTTGTACCTAAGTATGGTCTCGAACTCGTTGAGCTCAACAAG
TCAGATGCAGTCCTATTAAACACACAGGCTCGTATTTGTTTAAAGGCACT
CTTTGGCGTATCCAAGAAATCACGTAACCTCTTGAATACCATCTACAATC
TCCCGGACGTTACCACTCACATCAACAAGCGAAAATTGTCACTTCTCCAC
CTGGCGACCAAAAATCCATCAATAGCAGCATACATGTACCACATGCTGTC
ATCTGGAGACGACATATCCCATAGTTTTACCCATACAGCAAACAGCACGG
TGAACTGTTTGAATCTAGATATTGTTCATGTGTTACTCGACAAAAATTAC
CTTACTGTAGTTAATTTCTGGTCTGTTCTTGTATTTAAGGAACTCGCAAG
GAACCTTTATCTGAAGAACTCTTTGATCCCTAAGGATGTCTTTGTTCTGT
GTTGTTTTTCATAAAGGAGTAAACTGTTCAATAAGGAATGGTTTAAACTC
CAATTTCAAAATTGTGTTTCAATTGTTCCTTTGTTCCTTTATAGGATGAA
TTATTTGTTCTTTTCGTGTTGACAGATAATTTGTTCTCTTACAAAGGAAT
AAGATGTATACTTTCGCTAAGGAGCAAATTTattctttcttcaattttat
aACAAGG Coding sequence (CDS) from alignment at scaffold_492:119358..120964 >TCONS_00069050 ID=TCONS_00069050|Name=TCONS_00069050|organism=Clytia hemisphaerica|type=CDS|length=1413bp|location=Sequence derived from alignment at scaffold_492:119358..120964 (Clytia hemisphaerica)
aaacttttttcgtCATCACGTTTACCAAGCCAACTAGGCACTTCAATTAT
TATTCCACTCGTTAAATCCTACAAGAAATCATTAAATGACCCTAATAACT
ATCGTGGGATTAGCCTTATCCCAATTATGACTAAAGTAATAGAACTAGTT
GTATTGATCAAATGCCCAGACATCTCCAACCACACAGACTCTCAATTTGG
TTTTGTAGCTGGTTCCTCCACCCTACACGCAGAACTATTGATCTCAGACA
CTTTGAAATACTACAATAATCGAGGCAGTTCCGTATACGTATGCAGTCTA
GATGCTGAAAAAGCGTTTGATTCATGCAATTGGCACACCCTTTTCTGCAA
ACTACAAAATAGGGACATTCCAAACCAGGTCCTATCAATGCTGATAAAAC
TCTATCTGAATGGGTCTGCCATTGTTCACTATGCTGCCCATTACTCGAAA
GAACTTTTATTGACTCAAGGGGTTCGTCAAGGAAGCATCCTTTCTCCCTT
TCTGTACAGCATCTACATTGAAGATCTCCTTCTCCGAGTGAAGTCTCTCC
AGATTGGAACATTCCTCCCCAACAATCTCCACACAGGTATCATAGCTTAT
GCTGACGACATCATATTAATGAGTCCTACTCTCACTCACCTTCAAATGAT
GATTGACCATTGTATCGATCACGGTGTCAGCAACTGTCTCAGGTACAATC
AGATCAAGACCCAGTTTACAATATCTGGCAAAACTCCAATCAGAAATCCT
GTTATCCGGATCGACAACACTATCGTCCAGAAGCAGGAGACCCTAAAACA
CCTTGGCTTTCAGTGGGAGATTGACAAGAACATTCTTACTCTTAAAAGAC
ATATGTTAGATCGCATAGCATGCATGTGGTCAGTGGCTACCTCCCTTATT
AGTGCTGGTATTCGTAAATGTCATCCAAACCAGATTGTGACTCTATTTAC
TCCCATCGTTGTACCTAAGTATGGTCTCGAACTCGTTGAGCTCAACAAGT
CAGATGCAGTCCTATTAAACACACAGGCTCGTATTTGTTTAAAGGCACTC
TTTGGCGTATCCAAGAAATCACGTAACCTCTTGAATACCATCTACAATCT
CCCGGACGTTACCACTCACATCAACAAGCGAAAATTGTCACTTCTCCACC
TGGCGACCAAAAATCCATCAATAGCAGCATACATGTACCACATGCTGTCA
TCTGGAGACGACATATCCCATAGTTTTACCCATACAGCAAACAGCACGGT
GAACTGTTTGAATCTAGATATTGTTCATGTGTTACTCGACAAAAATTACC
TTACTGTAGTTAATTTCTGGTCTGTTCTTGTATTTAAGGAACTCGCAAGG
AACCTTTATCTGAAGAACTCTTTGATCCCTAAGGATGTCTTTGTTCTGTG
TTGTTTTTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069050-exon-scaffold_492-1491911889:119358..120964 | TCONS_00069050-exon-scaffold_492-1491911889:119358..120964 | Clytia hemisphaerica | exon |
| TCONS_00069050-exon-scaffold_492-1510915933:119358..120964 | TCONS_00069050-exon-scaffold_492-1510915933:119358..120964 | Clytia hemisphaerica | exon |
| TCONS_00069050-exon-scaffold_492-1575043694:119358..120964 | TCONS_00069050-exon-scaffold_492-1575043694:119358..120964 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_492 | supercontig | scaffold_492:119358..120964 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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