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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069041 ID=TCONS_00069041|Name=TCONS_00069041|organism=Clytia hemisphaerica|type=transcript|length=1144bp
TTAAGATTGAAAATACGATATCTTTCAATATAAATAATCATCTATAATTA
CATAGATTTTCACCAAATATAATGCCAGTGCTTCAAAGTATGGATTTTAG
CTGAATGGTTTATTtatctttgttttcattttcttacattttttctgtga
caTAGTAAAAAGGGAATATTATTCTAAACTATACTTTAACAGAGTAAGGA
ATATCCCCTTTGCAGTTGTATAGAAAGCAGGGTATCAATCTGATCAAAAT
CCAAGTAATTTTAAAAACTATTGTCTATGTATAACTTTaataataattaa
taataatttcattcaatagaaaaaatataatattcaaaattttcgttttc
aaTTATTTAGTAATTTGGGTGAAATTATACGGTCAAAAAATAAACcttaa
aataaataattgattAGGTATATAGGTGTATGTAATGTGAGTGTGATGAT
caaaaatgcatcaaaaatAGAACTACAACTGAACTAGGTAATCAGTGTGT
TAGGAATTCTTGGTTTTCAATAGATGTGTGTTGTATATGGagtgttttat
ttttcagcGTTAAAAACGCTTACTCTCCTAGGTTTAACCCTAACGTTCTT
AACCCATTTTTTTAATATGGTTTTCCGTTGATGGCTTTATTCCATGTGTT
TAAGCCATTGTTGTATCTTTCAATAAAAGATCGTCGAGCGGCTTTCTTGA
CTGCCTTTGCGGCTTGGATTTCTTGGTCATTGGAGCAAACCAATGTTGGA
TTATGCTTTTCTTTGATAGCAGCATCGAGCTCAGTCAAGAGTACTCTGAC
GGGACCTTGGATTTTACCAACTTGTTTGTTACATTGTGGTTGACCTGGTT
GTGGTTTTGGGATCAAGAGTTCTTCTACGGGCAGATAAGTACCAGCAGGG
ATGAAGATCCATGTGATTTTCAAGCCAGCAGATTGTGCTAACGTCTTGAT
GGTGTTCAAATCTTTAGCATAGACACATCGTGTTCTCTTGAAAGCATCAC
ATGCACGCATCAAGTGGGCGTTGTCGTGTGGTAATTCAACATCATCATCC
ACGTCATCCTCATCTTTGCCTATTGTAGAATTGTCAAATGAATTATCAAT
GTGTGTTAGAGATGAGGGTGAGAACTTATAAAGCGATATTAAAC Run BLAST on NCBI protein sequence of TCONS_00069041-protein >TCONS_00069041-protein ID=TCONS_00069041-protein|Name=TCONS_00069041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
LISLYKFSPSSLTHIDNSFDNSTIGKDEDDVDDDVELPHDNAHLMRACDA
FKRTRCVYAKDLNTIKTLAQSAGLKITWIFIPAGTYLPVEELLIPKPQPG
QPQCNKQVGKIQGPVRVLLTELDAAIKEKHNPTLVCSNDQEIQAAKAVKK
AARRSFIERYNNGLNTWNKAINGKPY Run BLAST on NCBI transcript from alignment at scaffold_492:26247..27390 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069041 ID=TCONS_00069041|Name=TCONS_00069041|organism=Clytia hemisphaerica|type=transcript|length=1144bp|location=Sequence derived from alignment at scaffold_492:26247..27390 (Clytia hemisphaerica)
GTTTAATATCGCTTTATAAGTTCTCACCCTCATCTCTAACACACATTGAT
AATTCATTTGACAATTCTACAATAGGCAAAGATGAGGATGACGTGGATGA
TGATGTTGAATTACCACACGACAACGCCCACTTGATGCGTGCATGTGATG
CTTTCAAGAGAACACGATGTGTCTATGCTAAAGATTTGAACACCATCAAG
ACGTTAGCACAATCTGCTGGCTTGAAAATCACATGGATCTTCATCCCTGC
TGGTACTTATCTGCCCGTAGAAGAACTCTTGATCCCAAAACCACAACCAG
GTCAACCACAATGTAACAAACAAGTTGGTAAAATCCAAGGTCCCGTCAGA
GTACTCTTGACTGAGCTCGATGCTGCTATCAAAGAAAAGCATAATCCAAC
ATTGGTTTGCTCCAATGACCAAGAAATCCAAGCCGCAAAGGCAGTCAAGA
AAGCCGCTCGACGATCTTTTATTGAAAGATACAACAATGGCTTAAACACA
TGGAATAAAGCCATCAACGGAAAACCATATTAAAAAAATGGGTTAAGAAC
GTTAGGGTTAAACCTAGGAGAGTAAGCGTTTTTAACgctgaaaaataaaa
cactCCATATACAACACACATCTATTGAAAACCAAGAATTCCTAACACAC
TGATTACCTAGTTCAGTTGTAGTTCTatttttgatgcatttttgATCATC
ACACTCACATTACATACACCTATATACCTaatcaattatttattttaagG
TTTATTTTTTGACCGTATAATTTCACCCAAATTACTAAATAAttgaaaac
gaaaattttgaatattatattttttctattgaatgaaattattattaatt
attattAAAGTTATACATAGACAATAGTTTTTAAAATTACTTGGATTTTG
ATCAGATTGATACCCTGCTTTCTATACAACTGCAAAGGGGATATTCCTTA
CTCTGTTAAAGTATAGTTTAGAATAATATTCCCTTTTTACTAtgtcacag
aaaaaatgtaagaaaatgaaaacaaagataAATAAACCATTCAGCTAAAA
TCCATACTTTGAAGCACTGGCATTATATTTGGTGAAAATCTATGTAATTA
TAGATGATTATTTATATTGAAAGATATCGTATTTTCAATCTTAA Coding sequence (CDS) from alignment at scaffold_492:26247..27390 >TCONS_00069041 ID=TCONS_00069041|Name=TCONS_00069041|organism=Clytia hemisphaerica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_492:26247..27390 (Clytia hemisphaerica)
TTAATATCGCTTTATAAGTTCTCACCCTCATCTCTAACACACATTGATAA
TTCATTTGACAATTCTACAATAGGCAAAGATGAGGATGACGTGGATGATG
ATGTTGAATTACCACACGACAACGCCCACTTGATGCGTGCATGTGATGCT
TTCAAGAGAACACGATGTGTCTATGCTAAAGATTTGAACACCATCAAGAC
GTTAGCACAATCTGCTGGCTTGAAAATCACATGGATCTTCATCCCTGCTG
GTACTTATCTGCCCGTAGAAGAACTCTTGATCCCAAAACCACAACCAGGT
CAACCACAATGTAACAAACAAGTTGGTAAAATCCAAGGTCCCGTCAGAGT
ACTCTTGACTGAGCTCGATGCTGCTATCAAAGAAAAGCATAATCCAACAT
TGGTTTGCTCCAATGACCAAGAAATCCAAGCCGCAAAGGCAGTCAAGAAA
GCCGCTCGACGATCTTTTATTGAAAGATACAACAATGGCTTAAACACATG
GAATAAAGCCATCAACGGAAAACCATATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069041-exon-scaffold_492-1491911889:26247..27390 | TCONS_00069041-exon-scaffold_492-1491911889:26247..27390 | Clytia hemisphaerica | exon |
| TCONS_00069041-exon-scaffold_492-1510915933:26247..27390 | TCONS_00069041-exon-scaffold_492-1510915933:26247..27390 | Clytia hemisphaerica | exon |
| TCONS_00069041-exon-scaffold_492-1575043694:26247..27390 | TCONS_00069041-exon-scaffold_492-1575043694:26247..27390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_492 | supercontig | scaffold_492:26247..27390 . |
Blast
The following BLAST results are available for this feature:
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