TCONS_00069038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069038
Unique NameTCONS_00069038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069038 ID=TCONS_00069038|Name=TCONS_00069038|organism=Clytia hemisphaerica|type=transcript|length=526bp
NNTCAGTAGTCAAATCAAGAACTCTTTGCAGTATACGTCTGAAGCCCCAG
GTTATAATCCGACCACACTGGCATCTAACGATGAGATGGGCAGCTAAGAT
AACCCAAAACTAAATATACTGGTTTTTGAGTGCCAAATAGCCCAACCCCC
TaagtaaattttgatttgaaaacacttgattttgCATGGAAAATATGATT
ATGTCAGTTAAGTTGTCGTCAAAAATGTCAGTAGTCAAACCAAGATCTAT
TTGCAGTATATGCCTGAAGCCCCAGGTTATAATCCGACCACACTGGCATC
TGACGATGAGATGGGCAGCTAAGATAACACAGAACTAAATATACTGGTTT
TTGAGTGCCAAATAACCCAACCCCCtaaattttgatatgaaaacacttga
ttttttaatagaaaatatGATTCTGTCAGTGTTAAGTTTGTCGTCAATAA
TGTCAGTAGTCAAATCAAGAACTCTTTGCAGTATACGTCTGAAGCCCCAG
GTTATAATCCGACCACACTGGCATCT
Run BLAST on NCBI

transcript from alignment at scaffold_492:132263..133010-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069038 ID=TCONS_00069038|Name=TCONS_00069038|organism=Clytia hemisphaerica|type=transcript|length=748bp|location=Sequence derived from alignment at scaffold_492:132263..133010- (Clytia hemisphaerica)
NNTCAGTAGTCAAATCAAGAACTCTTTGCAGTATACGTCTGAAGCCCCAG
GTTATAATCCGACCACACTGGCATCTAACGATGAGATGGGCAGGTAAGAT
AACCCAAAACTAAATATACTGGTTTTTGAGTGCCAAATAGCCTAACCCCC
TAAATTTTGATTTGAAAACACTTGATTTTGCATGGAAAATATGATTATGT
CAGTTAAGTTTGTTGTCAATAATGTCAGTAGTCAAACCAAGATCTATTTG
CAGTATACGTCTGAAGCCCCAGGTTATAATCCGACCATACTGGCATCTGA
CGATGAGATGGGCAGCTAAGATAACCCAAAACTAAATATACTGGTTTTTG
AGTGCCAAATAGCCCAACCCCCTAAGTAAATTTTGATTTGAAAACACTTG
ATTTTGCATGGAAAATATGATTATGTCAGTTAAGTTGTCGTCAAAAATGT
CAGTAGTCAAACCAAGATCTATTTGCAGTATATGCCTGAAGCCCCAGGTT
ATAATCCGACCACACTGGCATCTGACGATGAGATGGGCAGCTAAGATAAC
ACAGAACTAAATATACTGGTTTTTGAGTGCCAAATAACCCAACCCCCTAA
ATTTTGATATGAAAACACTTGATTTTTTAATAGAAAATATGATTCTGTCA
GTGTTAAGTTTGTCGTCAATAATGTCAGTAGTCAAATCAAGAACTCTTTG
CAGTATACGTCTGAAGCCCCAGGTTATAATCCGACCACACTGGCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043024XLOC_043024Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069038-exon-scaffold_492-1575043694:132918..133010TCONS_00069038-exon-scaffold_492-1575043694:132918..133010Clytia hemisphaericaexon
TCONS_00069038-exon-scaffold_492-1575043694:132263..132695TCONS_00069038-exon-scaffold_492-1575043694:132263..132695Clytia hemisphaericaexon
TCONS_00069038-exon-scaffold_492-1510915933:132918..133010TCONS_00069038-exon-scaffold_492-1510915933:132918..133010Clytia hemisphaericaexon
TCONS_00069038-exon-scaffold_492-1510915933:132263..132695TCONS_00069038-exon-scaffold_492-1510915933:132263..132695Clytia hemisphaericaexon
TCONS_00069038-exon-scaffold_492-1491911889:132918..133010TCONS_00069038-exon-scaffold_492-1491911889:132918..133010Clytia hemisphaericaexon
TCONS_00069038-exon-scaffold_492-1491911889:132263..132695TCONS_00069038-exon-scaffold_492-1491911889:132263..132695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_492supercontigscaffold_492:132263..133010 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33805	1.85065	1.70348	1.30186	4.59597	5.21513	3.92292	6.27761	1.71882	2.16339	2.97261	2.62982	2.94228	2.70988	2.05906	1.60153	1.87145	1.94475	0.919845	1.97704	3.87072	0.779047	0.345377	1.45431	16.0379	19.7615	0.780228	0	0.621097	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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