TCONS_00069036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069036
Unique NameTCONS_00069036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length891

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069036 ID=TCONS_00069036|Name=TCONS_00069036|organism=Clytia hemisphaerica|type=transcript|length=891bp
TTTGAGCCTAAAGACTCCGCTACCTTCTTGGAAGACATGTACGAGTGTGT
CTCTGATCAACAGAATCAAATCCATAACGCATTTCTCGGACTGCCGAGTC
GGTATGTGGTACCGAAATACCGAACTGTCAAAAAACTAGCAAACGGCAAG
TACTCGTGCGATGGCGGATGTCCCGGATATGATTCTAGATTAATATGTGC
ACACACTATGGTAGCTGCTAAATTTGGAGGTAAATCAagaaagtgaaaaa
gtgacAAAGCACTATCTACAGTAAGCAAAAAAACATCCCTCGGCGAACTT
ATTCAAAACAACAAcgaagaagatgaagatgatgaaCTAAACGCAACGCC
ACCTGTTCCAGCTCATACTGTCGTCGAGAGAAGTGGCCCTGGCATGAAGA
TGAAAATCAGAAAACCAAATAAACCGTCTTTTGTAGAAAAAACTTCGACT
CCTTTTCAACTTATCCAAATAAAGGCAAATATACGGAAATGCGCAGGTTG
CGGGAATAGCCTCAAAGACGGTCCAGATTTTGACGCCGATATGGTTGATC
AGATCTATTGCATTCGTCACAAGGAAAGGgatcatttttatcaaaaggaa
aaaGGTACCTGGAAATCAACCTTCCAGAATGTGCATTACCACCTTCACCC
TCAATGTATCACCAACAGAAATCCGTCCTTTGACAAGTTAGAACTGGTAA
TGGAAGTTGACCTTGATGGTGACTTGAAAATTACATTGACAATCAGATTC
TACTAACTCGTTTACCTGAACTCGTAATCATTTTACATCTATAgccattt
cttttgtttattttcccTACAAGCTTtgactttttcaacttttgttattt
tggttattttgtttATGCGCACAGCaatgcttcattttttt
Run BLAST on NCBI

protein sequence of TCONS_00069036-protein

>TCONS_00069036-protein ID=TCONS_00069036-protein|Name=TCONS_00069036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MKMKIRKPNKPSFVEKTSTPFQLIQIKANIRKCAGCGNSLKDGPDFDADM
VDQIYCIRHKERDHFYQKEKGTWKSTFQNVHYHLHPQCITNRNPSFDKLE
LVMEVDLDGDLKITLTIRFY
Run BLAST on NCBI

transcript from alignment at scaffold_492:12030..13312-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069036 ID=TCONS_00069036|Name=TCONS_00069036|organism=Clytia hemisphaerica|type=transcript|length=1283bp|location=Sequence derived from alignment at scaffold_492:12030..13312- (Clytia hemisphaerica)
TTTGAGCCTAAAGACTCCGCTACCTTCTTGGAAGACATGTACGAGTGTGT
CTCTGATCAACAGAATCAAATCCATAACGCATTTCTCGGACTGCCGAGTC
GGTATGTGGTACCGAAATACCGAACTGTCAAAAAACTAGCAAACGGCAAG
TACTCGTGCGATGGCGGATGTCCCGGATATGATTCTAGATTAATATGTGC
ACACACTATGGTAGCTGCTAAATTTGGAGGTAGTTTAATAGCGTACCTTG
TTTATAAGGGACAAGCAGATACCAAAAGGGAACTATTTTATGCAGTGAGT
GAGATTTTTTGCAGATTTTTTTATTTTTGAATAAATTACAGCCGTTCTGT
AAATAGTTTAACCATTGTATTTCACATTTGAAAAATTTTACAGGTTCTAA
ATTTCGTGCTTTGACTCAAAAACTGCAAAATTTAGTTCCCTCTAAAATTA
GTTCCCTTAATGTAGTTTTTGATATTTGGTAAGTTGATGGATCATAACAA
ATTTTAAGATCCCAACAAAATTTCCTACAGGTTTTTTAACGGGCAATCTC
AAAATTTATTTGCTCTGAATTTTTCTTTCTCTCATTCAAATTTCGATCTG
CTGTTTCCATTTTCCTTTCAGGTAAATCAAGAAAGTGAAAAAGTGACAAA
GCACTATCTACAGTAAGCAAAAAAACATCCCTCGGCGAACTTATTCAAAA
CAACAACGAAGAAGATGAAGATGATGAACTAAACGCAACGCCACCTGTTC
CAGCTCATACTGTCGTCGAGAGAAGTGGCCCTGGCATGAAGATGAAAATC
AGAAAACCAAATAAACCGTCTTTTGTAGAAAAAACTTCGACTCCTTTTCA
ACTTATCCAAATAAAGGCAAATATACGGAAATGCGCAGGTTGCGGGAATA
GCCTCAAAGACGGTCCAGATTTTGACGCCGATATGGTTGATCAGATCTAT
TGCATTCGTCACAAGGAAAGGGATCATTTTTATCAAAAGGAAAAAGGTAC
CTGGAAATCAACCTTCCAGAATGTGCATTACCACCTTCACCCTCAATGTA
TCACCAACAGAAATCCGTCCTTTGACAAGTTAGAACTGGTAATGGAAGTT
GACCTTGATGGTGACTTGAAAATTACATTGACAATCAGATTCTACTAACT
CGTTTACCTGAACTCGTAATCATTTTACATCTATAGCCATTTCTTTTGTT
TATTTTCCCTACAAGCTTTGACTTTTTCAACTTTTGTTATTTTGGTTATT
TTGTTTATGCGCACAGCAATGCTTCATTTTTTT

Coding sequence (CDS) from alignment at scaffold_492:12030..13312-

>TCONS_00069036 ID=TCONS_00069036|Name=TCONS_00069036|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_492:12030..13312- (Clytia hemisphaerica)
ATGAAGATGAAAATCAGAAAACCAAATAAACCGTCTTTTGTAGAAAAAAC
TTCGACTCCTTTTCAACTTATCCAAATAAAGGCAAATATACGGAAATGCG
CAGGTTGCGGGAATAGCCTCAAAGACGGTCCAGATTTTGACGCCGATATG
GTTGATCAGATCTATTGCATTCGTCACAAGGAAAGGGATCATTTTTATCA
AAAGGAAAAAGGTACCTGGAAATCAACCTTCCAGAATGTGCATTACCACC
TTCACCCTCAATGTATCACCAACAGAAATCCGTCCTTTGACAAGTTAGAA
CTGGTAATGGAAGTTGACCTTGATGGTGACTTGAAAATTACATTGACAAT
CAGATTCTACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043022XLOC_043022Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069036-proteinTCONS_00069036-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069036-exon-scaffold_492-1575043694:13084..13312TCONS_00069036-exon-scaffold_492-1575043694:13084..13312Clytia hemisphaericaexon
TCONS_00069036-exon-scaffold_492-1575043694:12030..12691TCONS_00069036-exon-scaffold_492-1575043694:12030..12691Clytia hemisphaericaexon
TCONS_00069036-exon-scaffold_492-1510915933:13084..13312TCONS_00069036-exon-scaffold_492-1510915933:13084..13312Clytia hemisphaericaexon
TCONS_00069036-exon-scaffold_492-1510915933:12030..12691TCONS_00069036-exon-scaffold_492-1510915933:12030..12691Clytia hemisphaericaexon
TCONS_00069036-exon-scaffold_492-1491911889:13084..13312TCONS_00069036-exon-scaffold_492-1491911889:13084..13312Clytia hemisphaericaexon
TCONS_00069036-exon-scaffold_492-1491911889:12030..12691TCONS_00069036-exon-scaffold_492-1491911889:12030..12691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_492supercontigscaffold_492:12030..13312 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0438364	0	0	0.0346451	0.034597	0	0.0295388	0.0316996	0	0.120079	0	0	0	0	0	0.0542262	0.0558517	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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