TCONS_00069019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069019
Unique NameTCONS_00069019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069019 ID=TCONS_00069019|Name=TCONS_00069019|organism=Clytia hemisphaerica|type=transcript|length=1487bp
aaaaatacaaaaaaacgaaaaaaagctACAACCTCCTAACATCGTTATCA
AGATCTTCAAATGCTTAACCATTGGACACCAAAATGACAAATACTACTAT
ACAGGGTGCCATTATGATCAATACAACATTGTCACCGAATAATAATGTTC
AAGACGGTCCTGGAGGCTTCCCAAAAGTGGAACTAATGACTTCAAATATG
ATTCTAATTTTCTCTTTATTGAATATCGGGATCTTCATCATTGGTCTTAT
CGGGAACATCCTAACAATCCTGGTTATCGTAAGTCGTAAAGCTATGCGAC
GTTCGATTCATTATTACACCTTTAATTTATGCATCTGTGACCTCACGATC
CTGTTATTTTTCGTCCCGACACAAATCACGACAATTAACGACGATTTACG
ATGGACCAATGGGATTAATTTATGTCGCGTATCGTATGGGGTGATTCCGA
CAGGACTTGTAACAACAATAGCGACTCTTCTTTGTATCTCGATCGACAGA
GCTTACGGTCTTTTAAAGCCATTCAAATGGAGATCCAGTTCCCGAAAATC
AGCTAAGATCTTAATCACAGGGACGTGGACGTTATCTATTATCTTAAACT
TACCGTTATTTTTCGTCATACGTTTATTACCGTTCGGCGATGGAACATTC
TTCTGTGGCGAACAATGGAACCCACACTACTGGCATTTTTATTATTGGCT
GGCATCTTTCGTATTAACTTTTGCTATCCCGCTGGTCTGTATTTTTATCC
TTCAATTAGTCCTTGTTTACACTatcaaatttaaagtaaaaaatcgAACG
TTTAAAAAACAGAACCAACGTATGGCGAACATGACGGTAGCGATCGTGTT
AGTATTTACTTTTTGTTCGGGTATGCAACATATTATGTTTTTCTTAAGTc
atttcaaagttgaaatggATAAGGACACGTACCTAATCGTCCACTGCACC
GGCAATCTATTAGTAGTCTTACAAGCTGGAATTAACCCATTCATTTATGG
TAAATTTCGTGGTGATTTCAGCCGTGgttataagaacatgtttaagaACG
TGAAGCCAATATGTAAACGCTTATTCGTAGCGGAACACAAAAGCGGCTTA
ATCAACGTTGTCATAACGCCGCCGTCAAGCGAATCGCTACACGTCTCACC
GGATTCCGAAATCGGATCCTCAATGCTTCAAATCCCGATACATAGAAACT
ACAAATACATGATAAATGGGAAAACAATTTATCCGAAGAAAAAAGGACTC
AGAGAATTCCGACCAAAAACACAACGAATAATCAACAGGAACCAAGAAAA
CAAGAATCAAAGACATAGTGTAAACAAGGCTTTAGTGGAAAATAAGATGT
TACCAGGCAACGTGAAACTGTTCGACgatatgaaattgtttttggATGTC
TCCAATAAGTCTAGATGCTCGTTTACACGAGAACTTTTGAATGATACTCG
AGAGACTGATATACTATGCTAGGAAATACAATGTAAG
Run BLAST on NCBI

protein sequence of TCONS_00069019-protein

>TCONS_00069019-protein ID=TCONS_00069019-protein|Name=TCONS_00069019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MTNTTIQGAIMINTTLSPNNNVQDGPGGFPKVELMTSNMILIFSLLNIGI
FIIGLIGNILTILVIVSRKAMRRSIHYYTFNLCICDLTILLFFVPTQITT
INDDLRWTNGINLCRVSYGVIPTGLVTTIATLLCISIDRAYGLLKPFKWR
SSSRKSAKILITGTWTLSIILNLPLFFVIRLLPFGDGTFFCGEQWNPHYW
HFYYWLASFVLTFAIPLVCIFILQLVLVYTIKFKVKNRTFKKQNQRMANM
TVAIVLVFTFCSGMQHIMFFLSHFKVEMDKDTYLIVHCTGNLLVVLQAGI
NPFIYGKFRGDFSRGYKNMFKNVKPICKRLFVAEHKSGLINVVITPPSSE
SLHVSPDSEIGSSMLQIPIHRNYKYMINGKTIYPKKKGLREFRPKTQRII
NRNQENKNQRHSVNKALVENKMLPGNVKLFDDMKLFLDVSNKSRCSFTRE
LLNDTRETDILC
Run BLAST on NCBI

transcript from alignment at scaffold_491:126569..128055

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069019 ID=TCONS_00069019|Name=TCONS_00069019|organism=Clytia hemisphaerica|type=transcript|length=1487bp|location=Sequence derived from alignment at scaffold_491:126569..128055 (Clytia hemisphaerica)
CTTACATTGTATTTCCTAGCATAGTATATCAGTCTCTCGAGTATCATTCA
AAAGTTCTCGTGTAAACGAGCATCTAGACTTATTGGAGACATccaaaaac
aatttcatatcGTCGAACAGTTTCACGTTGCCTGGTAACATCTTATTTTC
CACTAAAGCCTTGTTTACACTATGTCTTTGATTCTTGTTTTCTTGGTTCC
TGTTGATTATTCGTTGTGTTTTTGGTCGGAATTCTCTGAGTCCTTTTTTC
TTCGGATAAATTGTTTTCCCATTTATCATGTATTTGTAGTTTCTATGTAT
CGGGATTTGAAGCATTGAGGATCCGATTTCGGAATCCGGTGAGACGTGTA
GCGATTCGCTTGACGGCGGCGTTATGACAACGTTGATTAAGCCGCTTTTG
TGTTCCGCTACGAATAAGCGTTTACATATTGGCTTCACGTtcttaaacat
gttcttataacCACGGCTGAAATCACCACGAAATTTACCATAAATGAATG
GGTTAATTCCAGCTTGTAAGACTACTAATAGATTGCCGGTGCAGTGGACG
ATTAGGTACGTGTCCTTATccatttcaactttgaaatgACTTAAGAAAAA
CATAATATGTTGCATACCCGAACAAAAAGTAAATACTAACACGATCGCTA
CCGTCATGTTCGCCATACGTTGGTTCTGTTTTTTAAACGTTcgatttttt
actttaaatttgatAGTGTAAACAAGGACTAATTGAAGGATAAAAATACA
GACCAGCGGGATAGCAAAAGTTAATACGAAAGATGCCAGCCAATAATAAA
AATGCCAGTAGTGTGGGTTCCATTGTTCGCCACAGAAGAATGTTCCATCG
CCGAACGGTAATAAACGTATGACGAAAAATAACGGTAAGTTTAAGATAAT
AGATAACGTCCACGTCCCTGTGATTAAGATCTTAGCTGATTTTCGGGAAC
TGGATCTCCATTTGAATGGCTTTAAAAGACCGTAAGCTCTGTCGATCGAG
ATACAAAGAAGAGTCGCTATTGTTGTTACAAGTCCTGTCGGAATCACCCC
ATACGATACGCGACATAAATTAATCCCATTGGTCCATCGTAAATCGTCGT
TAATTGTCGTGATTTGTGTCGGGACGAAAAATAACAGGATCGTGAGGTCA
CAGATGCATAAATTAAAGGTGTAATAATGAATCGAACGTCGCATAGCTTT
ACGACTTACGATAACCAGGATTGTTAGGATGTTCCCGATAAGACCAATGA
TGAAGATCCCGATATTCAATAAAGAGAAAATTAGAATCATATTTGAAGTC
ATTAGTTCCACTTTTGGGAAGCCTCCAGGACCGTCTTGAACATTATTATT
CGGTGACAATGTTGTATTGATCATAATGGCACCCTGTATAGTAGTATTTG
TCATTTTGGTGTCCAATGGTTAAGCATTTGAAGATCTTGATAACGATGTT
AGGAGGTTGTagctttttttcgtttttttgtattttt

Coding sequence (CDS) from alignment at scaffold_491:126569..128055

>TCONS_00069019 ID=TCONS_00069019|Name=TCONS_00069019|organism=Clytia hemisphaerica|type=CDS|length=1389bp|location=Sequence derived from alignment at scaffold_491:126569..128055 (Clytia hemisphaerica)
CTAGCATAGTATATCAGTCTCTCGAGTATCATTCAAAAGTTCTCGTGTAA
ACGAGCATCTAGACTTATTGGAGACATccaaaaacaatttcatatcGTCG
AACAGTTTCACGTTGCCTGGTAACATCTTATTTTCCACTAAAGCCTTGTT
TACACTATGTCTTTGATTCTTGTTTTCTTGGTTCCTGTTGATTATTCGTT
GTGTTTTTGGTCGGAATTCTCTGAGTCCTTTTTTCTTCGGATAAATTGTT
TTCCCATTTATCATGTATTTGTAGTTTCTATGTATCGGGATTTGAAGCAT
TGAGGATCCGATTTCGGAATCCGGTGAGACGTGTAGCGATTCGCTTGACG
GCGGCGTTATGACAACGTTGATTAAGCCGCTTTTGTGTTCCGCTACGAAT
AAGCGTTTACATATTGGCTTCACGTtcttaaacatgttcttataacCACG
GCTGAAATCACCACGAAATTTACCATAAATGAATGGGTTAATTCCAGCTT
GTAAGACTACTAATAGATTGCCGGTGCAGTGGACGATTAGGTACGTGTCC
TTATccatttcaactttgaaatgACTTAAGAAAAACATAATATGTTGCAT
ACCCGAACAAAAAGTAAATACTAACACGATCGCTACCGTCATGTTCGCCA
TACGTTGGTTCTGTTTTTTAAACGTTcgattttttactttaaatttgatA
GTGTAAACAAGGACTAATTGAAGGATAAAAATACAGACCAGCGGGATAGC
AAAAGTTAATACGAAAGATGCCAGCCAATAATAAAAATGCCAGTAGTGTG
GGTTCCATTGTTCGCCACAGAAGAATGTTCCATCGCCGAACGGTAATAAA
CGTATGACGAAAAATAACGGTAAGTTTAAGATAATAGATAACGTCCACGT
CCCTGTGATTAAGATCTTAGCTGATTTTCGGGAACTGGATCTCCATTTGA
ATGGCTTTAAAAGACCGTAAGCTCTGTCGATCGAGATACAAAGAAGAGTC
GCTATTGTTGTTACAAGTCCTGTCGGAATCACCCCATACGATACGCGACA
TAAATTAATCCCATTGGTCCATCGTAAATCGTCGTTAATTGTCGTGATTT
GTGTCGGGACGAAAAATAACAGGATCGTGAGGTCACAGATGCATAAATTA
AAGGTGTAATAATGAATCGAACGTCGCATAGCTTTACGACTTACGATAAC
CAGGATTGTTAGGATGTTCCCGATAAGACCAATGATGAAGATCCCGATAT
TCAATAAAGAGAAAATTAGAATCATATTTGAAGTCATTAGTTCCACTTTT
GGGAAGCCTCCAGGACCGTCTTGAACATTATTATTCGGTGACAATGTTGT
ATTGATCATAATGGCACCCTGTATAGTAGTATTTGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043007XLOC_043007Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069019-proteinTCONS_00069019-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069019-exon-scaffold_491-1491911889:126569..128055TCONS_00069019-exon-scaffold_491-1491911889:126569..128055Clytia hemisphaericaexon
TCONS_00069019-exon-scaffold_491-1510915933:126569..128055TCONS_00069019-exon-scaffold_491-1510915933:126569..128055Clytia hemisphaericaexon
TCONS_00069019-exon-scaffold_491-1575043694:126569..128055TCONS_00069019-exon-scaffold_491-1575043694:126569..128055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_491supercontigscaffold_491:126569..128055 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.138802	0	0.0314317	0	0.0748728	0.207079	0.107071	0.0334129	0	0.0289762	0.0562499	0.0184882	0.0738502	0.172562	0.472898	0.0845819	0.375113	0.405838	0.767257	0.679359	0.697848	0.510578	2.06892	2.74907	1.72869	2.89943	8.60268	7.71855	0.123247	0.0941772
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
[Close]
BLAST of TCONS_00069019 vs. Swiss-Prot (Human)
Match: QRFPR (Pyroglutamylated RFamide peptide receptor OS=Homo sapiens GN=QRFPR PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 5.718e-17
Identity = 71/271 (26.20%), Postives = 127/271 (46.86%), Query Frame = 3 
Query:  288 KAMRRSIHYYTFNLCICDLTILLFFVP-TQITTINDDLRWTNGINLCRVSYGVIPTGLVTTIATLLCISIDRAYGLLKPF--KWRSSSRKSAKILITGTWTLSIILNLPLFFVIRL-----LPFGDGTFFCGEQWNPHYWHFYYWLASFVLTFAIPLVCIFILQLVLVYT--IKFKVKN----RT--------FKKQNQRMANMTVAIVLVFTFCSG---MQHIMFFLSHFKVEMDKDTYLIVHCTGNLLVVLQAGINPFIYGKFRGDFSR 1025
            KAMR   + +  +L + DL I  F +P T +  I+D+  W  G  +C++   V  T +VT I T+ CI+++R  GL+ PF  KW+ ++R+ A  ++   W +++I+  P++ V +L       +      C E+W        Y     V+ F +PL+ + IL   + Y   IK +V +    RT          ++ +R   M V +V +F  C     + H+M   S+F+ E D  T  ++     ++    +  NP +Y     +F +
Sbjct:   74 KAMRTVTNIFICSLALSDLLITFFCIPVTMLQNISDN--WLGGAFICKMVPFVQSTAVVTEILTMTCIAVERHQGLVHPFKMKWQYTNRR-AFTMLGVVWLVAVIVGSPMWHVQQLEIKYDFLYEKEHICCLEEWTSPVHQKIYTTFILVILFLLPLMVMLILYSKIGYELWIKKRVGDGSVLRTIHGKEMSKIARKKKRAVIMMVTVVALFAVCWAPFHVVHMMIEYSNFEKEYDDVTIKMIFAIVQIIGFSNSICNPIVYAFMNENFKK 341
The following BLAST results are available for this feature:
BLAST of TCONS_00069019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
QRFPR5.718e-1726.20Pyroglutamylated RFamide peptide receptor OS=Homo ... [more]
back to top