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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068997 ID=TCONS_00068997|Name=TCONS_00068997|organism=Clytia hemisphaerica|type=transcript|length=1564bp
AAGAAACAGAACAGAAGCGCCagaacaaaaaaaacacaaaaaaacagcAA
GAATCCTGCTGTAAAAATGTCTGAACAGAAGTATGGTCTTTTTATGAAGA
GTTTGCAAAAGAAGAAAGGCTTGAATAAAGTACACTCTGCGTTTGGAAAT
GATAGCAGCAGTGATGAAggtaattcaaagaaaaacaacaagaagTCTGC
AACAGACGAAAGTTCCAAAAAACTTTCcatgaaacaaacaaaaattgacA
TGGAAAAAGCTCTGAATGAAGACCCAACTGTGTATGAATATGATGAGGTT
TATGATCAAATggaagagaaaaagaaagagaCTGTTGCTGCAAAGATTCA
AGCTGACAAAAAGagtaaatatatttcaaaacttttgaaatctactGAGA
GTCGGAAACTTGAAGAAGAGAGGCGTAAGGAacgtaaaattcaaaaagag
aGAGAGGCTGAGGGGGAGGAGTTTGCAGATAAGGAAGAGTTTGTTACATC
TTCTTACAAGAAGAAAATTGAGGAAAGAAAAGCAGAAGAAGAACGTCAAA
GAAAACAAGACGAGGCCGATGCTGCCAATGATGTTACCAAACAAAAAGAT
CTTGGAATGTTTTATAAAAATCTCATGAACAAAAACACTTCAATGGGAGG
AAATGCTTCTGACTCAGAACATGATACtaagtcaaagaaaaaagaggaga
ACATCAAGTCATCTTCTAAATCAGCTGCAAAATCTAAAAACGAATCATCA
GAGGGGGAAGAACATGAGACAGACTCTCATAGATTCAAGAAGAGCACCAA
AAGAGGTtatcgaaaagttgaaaaaattaCAGCAGTGAAAGTAGTGCAGA
AGAAGAGGATGCTAAGCAGCAGAAAGTAAAGAACAAGAAAAAGTTAAGCC
GTAACAATTCAAGTGATGACTCTGATTATGAAAAGGATAAAAGGTCCGGA
AAAAAAGCCCCttccaaaaagaaaagacgAGACTCTTCTTCAGAATACTC
ATCTGAAAGCAGTAGTGAAGATGAAAAGCCAAAACGAAAAGCTAATAAGA
AATTGTCACCCAAAAGAAAACCTAGGGAAAGCTCTGATGAGGAAttgcaa
acaaaaaagaaagtggTAAAATCCCAATCATCCAGCAAACAAGAATCTAA
CAAAAAAGGAAGAAAGCGTTCAAAATCCACAGATGAATCAGACAGTGGAT
CAGAATATGAGAAAAAACAGAAGAAGAGTGCAAAGAAGTCAAAACAACGT
AAAAATTCCAGCTCAGAAAACTCTGACGCTAGCAACAGTGGCCCTATTAA
ATCTGAGAAAAAGATTGAAGCTGAGGAAAAGCCTCTGAAAAAGCCTCcca
cgaaaaagaaaaatatttttgctagaCGAAATACAGCAGAAGACATTGAA
GCTGCAAGAGAGAGATATTTAGCCCGAAAGCAAGCTTTATCAAGGGCTGA
GTAATGTAAATTTTATTATAAGATTTTATCACTTTTATAGCTGTATTTTT
AAACAAAGTTCAAATCTTTAGTCTTTTTCTTTCCCTTCTCCTCAGAGATC
TAAACAAAAGGCAG Run BLAST on NCBI transcript from alignment at scaffold_491:338096..340807- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068997 ID=TCONS_00068997|Name=TCONS_00068997|organism=Clytia hemisphaerica|type=transcript|length=2712bp|location=Sequence derived from alignment at scaffold_491:338096..340807- (Clytia hemisphaerica)
AAGAAACAGAACAGAAGCGCCAGAACAAAAAAAACACAAAAAAACAGCAA
GAATCCTGCTGTAAAAATGTCTGAACAGAAGTATGGTCTTTTTATGAAGA
GTTTGCAAAAGAAGAAAGGCTTGAATAAAGTACACTCTGCGTTTGGAAAT
GATAGCAGCAGTGATGAAGGTAATTCAAAGAAAAACAACAAGAAGTCTGC
AACAGACGAAAGTTCCAAAAAACTTTCCATGAAACAAACAAAAATTGACA
TGGAAAAAGCTCTGAATGAAGACCCAACTGTGTATGAATATGATGAGGTT
TATGATCAAATGGAAGAGAAAAAGAAAGAGACTGTTGCTGCAAAGATTCA
AGCTGACAAAAAGAGTAAATATATTTCAAAACTTTTGAAATCTACTGAGA
GTCGGAAACTTGAAGAAGAGAGGCGTAAGGAACGTAAAATTCAAAAAGAG
AGAGAGGCTGAGGGGGAGGAGTTTGCAGATAAGGAAGAGTTTGTTACATC
TTCTTACAAGAAGAAAATTGAGGAAAGAAAAGCAGAAGAAGAACGTCAAA
GAAAACAAGACGAGGCCGATGCTGCCAATGATGTTACCAAACAAAAAGAT
CTTGGAATGTTTTATAAAAATCTCATGAACAAAAACACTTCAATGGGAGG
AAATGCTTCTGACTCAGAACATGATACTAAGTCAAAGAAAAAAGAGGAGA
ACATCAAGTCATCTTCTAAATCAGCTGCAAAATCTAAAAACGAATCATCA
GAGGGGGAAGAACATGAGACAGACTCTCATAGATTCAAGAAGAGCACCAA
AAGAGGTTATCGAAAAGTTGAAAAAAGTTACAGCAGTGAAAGTAGTGCAG
AAGAAGAGGATGCTAAGCAGCTGAAAGTAAAGAACAAGAAAAAGTTAAGC
TGTAACAATTCAAGTGATGACTCTGATTATGAAAAGGATAAAAGGTCTGG
AAAAAAAGCCCCTTCCAAAAAGAAAAGACGAGACTCTTCTTCAGAATACT
CATCTGAAAGCAGTAGTGAAGATGAAAAGCCAAAACGAAANTTATGTGAC
TTGATTGGTGACCTAGCTCAAGCGAGCACAAATCTTTGAAAAGTGCGCAC
GCTTCGCTGTGGCAGTTCTCTCCAGTAGTTTCGTTTTCAGTCGTTCAAAG
AAACAGAACAGAAGCGCCAGAACAAAAAAAACACAAAAAAACAGCAAGAA
TCCTGCTGTAAAAATGTCTGAACAGAAGTATGGTCTTTTTATGAAGAGTT
TGCAAAAGAAGAAAGGCTTGAATAAAGTACACTCTGCGTTTGGAAATGAT
AGCAGCAGTGATGAAGGTAATTCAAAGAAAAACAACAAGAAGTCTGCAAC
AGACGAAAGTTCCAAAAAACTTTCCATGAAACAAACAAAAATTGACATGG
AAAAAGCTCTGAATGAAGACCCAACTGTGTATGAATATGATGAGGTTTAT
GATCAAATGGAAGAGAAAAAGAAAGAGACTGTTGCTGCAAAGATTCAAGC
TGACAAAAAGAGTAAATATATTTCAAAACTTTTGAAATCTACTGAGAGTC
GGAAACTTGAAGAAGAGAGGCGTAAGGAACGTAAAATTCAAAAAGAGAGA
GAGGCTGAGGGGGAGGAGTTTGCAGATAAGGAAGAGTTTGTTACATCTTC
TTACAAGAAGAAAATTGAGGAAAGAAAAGCAGAAGAAGAACGTCAAAGAA
AACAAGACGAGGCCGATGCTGCCAATGATGTTACCAAACAAAAAGATCTT
GGAATGTTTTATAAAAATCTCATGAACAAAAACACTTCAATGGGAGGAAA
TGCTTCTGACTCAGAACATGATACTAAGTCAAAGAAAAAAGAGGAGAACA
TCAAGTCATCTTCTAAATCAGCTGCAAAATCTAAAAACGAATCATCAGAG
GGGGAAGAACATGAGACAGACTCTCATAGATTCAAGAAGAGCACCAAAAG
AGGTTATCGAAAAGTTGAAAAAAGTTACAGCAGTGAAAGTAGTGCAGAAG
AAGAGGATGCTAAGCAGCAGAAAGTAAAGAACAAGAAAAAGTTAAGCCGT
AACAATTCAAGTGATGACTCTGATTATGAAAAGGATAAAAGGTCCGGAAA
AAAAGCCCCTTCCAAAAAGAAAAGACGAGACTCTTCTTCAGAATACTCAT
CTGAAAGCAGTAGTGAAGATGAAAAGCCAAAACGAAAAGCTAATAAGAAA
TTGTCACCCAAAAGAAAACCTAGGGAAAGCTCTGATGAGGAATTGCAAAC
AAAAAAGAAAGTGGTAAAATCCCAATCATCCAGCAAACAAGAATCTAACA
AAAAAGGAAGAAAGCGTTCAAAATCCACAGATGAATCAGACAGTGGATCA
GAATATGAGAAAAAACAGAAGAAGAGTGCAAAGAAGTCAAAACAACGTAA
AAATTCCAGCTCAGAAAACTCTGACGCTAGCAACAGTGGCCCTATTAAAT
CTGAGAAAAAGATTGAAGCTGAGGAAAAGCCTCTGAAAAAGCCTCCCACG
AAAAAGAAAAATATTTTTGCTAGACGAAATACAGCAGAAGACATTGAAGC
TGCAAGAGAGAGATATTTAGCCCGAAAGCAAGCTTTATCAAGGGCTGAGT
AATGTAAATTTTATTATAAGATTTTATCACTTTTATAGCTGTATTTTTAA
ACAAAGTTCAAATCTTTAGTCTTTTTCTTTCCCTTCTCCTCAGAGATCTA
AACAAAAGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068997-exon-scaffold_491-1575043694:339982..340807 | TCONS_00068997-exon-scaffold_491-1575043694:339982..340807 | Clytia hemisphaerica | exon |
| TCONS_00068997-exon-scaffold_491-1575043694:338096..338833 | TCONS_00068997-exon-scaffold_491-1575043694:338096..338833 | Clytia hemisphaerica | exon |
| TCONS_00068997-exon-scaffold_491-1510915933:339982..340807 | TCONS_00068997-exon-scaffold_491-1510915933:339982..340807 | Clytia hemisphaerica | exon |
| TCONS_00068997-exon-scaffold_491-1510915933:338096..338833 | TCONS_00068997-exon-scaffold_491-1510915933:338096..338833 | Clytia hemisphaerica | exon |
| TCONS_00068997-exon-scaffold_491-1491911889:339982..340807 | TCONS_00068997-exon-scaffold_491-1491911889:339982..340807 | Clytia hemisphaerica | exon |
| TCONS_00068997-exon-scaffold_491-1491911889:338096..338833 | TCONS_00068997-exon-scaffold_491-1491911889:338096..338833 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_491 | supercontig | scaffold_491:338096..340807 - |
Blast
The following BLAST results are available for this feature:
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