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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068996 ID=TCONS_00068996|Name=TCONS_00068996|organism=Clytia hemisphaerica|type=transcript|length=2886bp
TTTTTGACTAGTCCTTCAAAGGTGCATGCTGCTAGATCCTCGGTTATGTG
ACTTGATTGGTGACCTAGCTCAAGCGAACACAAATCTTTGAAAAGTGCGC
ACGCTTCGCTGTGGCAGTTCTCTCCAGTAGTTTCGTTTTCAGTCGTTCAA
AGAAACAGAACAGAAGCGCCagaacaaaaaaaacacaaaaaaacagcAAG
AATCCTGCTGTAAAAATGTCTGAACAGAAGTATGGTCTTTTTATGAAGAG
TTTGCAAAAGAAGAAAGGCTTGAATAAAGTACACTCTGCGTTTGGAAATG
ATAGCAGCAGTGATGAAggtaattcaaagaaaaacaacaagaagTCTGCA
ACAGACGAAAGTTCCAAAAAACTTTCcatgaaacaaacaaaaattgacAT
GGAAAAAGCTCTGAATGAAGACCCAACTGTGTATGAATATGATGAGGTTT
ATGATCAAATggaagagaaaaagaaagagaCTGTTGCTGCAAAGATTCAA
GCTGACAAAAAGagtaaatatatttcaaaacttttgaaatctactGAGAG
TCGGAAACTTGAAGAAGAGAGGCGTAAGGAacgtaaaattcaaaaagaga
GAGAGGCTGAGGGGGAGGAGTTTGCAGATAAGGAAGAGTTTGTTACATCT
TCTTACAAGAAGAAAATTGAGGAAAGAAAAGCAGAAGAAGAACGTCAAAG
AAAACAAGACGAGGCCGATGCTGCCAATGATGTTACCAAACAAAAAGATC
TTGGAATGTTTTATAAAAATCTCATGAACAAAAACACTTCAATGGGAGGA
AATGCTTCTGACTCAGAACATGATACtaagtcaaagaaaaaagaggagaA
CATCAAGTCATCTTCTAAATCAGCTGCAAAATCTAAAAACGAATCATCAG
AGGGGGAAGAACATGAGACAGACTCTCATAGATTCAAGAAGAGCACCAAA
AGAGGTtatcgaaaagttgaaaaaagttaCAGCAGTGAAAGTAGTGCAGA
AGAAGAGGATGCTAAGCAGCTGAAAGTAAAGAACAAGAAAAAGTTAAGCT
GTAACAATTCAAGTGATGACTCTGATTATGAAAAGGATAAAAGGTCTGGA
AAAAAAGCCCCttccaaaaagaaaagacgAGACTCTTCTTCAGAATACTC
ATCTGAAAGCAGTAGTGAAGATGAAAAGCCAAAACGAAANTTATGTGACT
TGATTGGTGACCTAGCTCAAGCGAGCACAAATCTTTGAAAAGTGCGCACG
CTTCGCTGTGGCAGTTCTCTCCAGTAGTTTCGTTTTCAGTCGTTCAAAGA
AACAGAACAGAAGCGCCagaacaaaaaaaacacaaaaaaacagcAAGAAT
CCTGCTGTAAAAATGTCTGAACAGAAGTATGGTCTTTTTATGAAGAGTTT
GCAAAAGAAGAAAGGCTTGAATAAAGTACACTCTGCGTTTGGAAATGATA
GCAGCAGTGATGAAggtaattcaaagaaaaacaacaagaagTCTGCAACA
GACGAAAGTTCCAAAAAACTTTCcatgaaacaaacaaaaattgacATGGA
AAAAGCTCTGAATGAAGACCCAACTGTGTATGAATATGATGAGGTTTATG
ATCAAATggaagagaaaaagaaagagaCTGTTGCTGCAAAGATTCAAGCT
GACAAAAAGagtaaatatatttcaaaacttttgaaatctactGAGAGTCG
GAAACTTGAAGAAGAGAGGCGTAAGGAacgtaaaattcaaaaagagaGAG
AGGCTGAGGGGGAGGAGTTTGCAGATAAGGAAGAGTTTGTTACATCTTCT
TACAAGAAGAAAATTGAGGAAAGAAAAGCAGAAGAAGAACGTCAAAGAAA
ACAAGACGAGGCCGATGCTGCCAATGATGTTACCAAACAAAAAGATCTTG
GAATGTTTTATAAAAATCTCATGAACAAAAACACTTCAATGGGAGGAAAT
GCTTCTGACTCAGAACATGATACtaagtcaaagaaaaaagaggagaACAT
CAAGTCATCTTCTAAATCAGCTGCAAAATCTAAAAACGAATCATCAGAGG
GGGAAGAACATGAGACAGACTCTCATAGATTCAAGAAGAGCACCAAAAGA
GGTtatcgaaaagttgaaaaaagttaCAGCAGTGAAAGTAGTGCAGAAGA
AGAGGATGCTAAGCAGCAGAAAGTAAAGAACAAGAAAAAGTTAAGCCGTA
ACAATTCAAGTGATGACTCTGATTATGAAAAGGATAAAAGGTCCGGAAAA
AAAGCCCCttccaaaaagaaaagacgAGACTCTTCTTCAGAATACTCATC
TGAAAGCAGTAGTGAAGATGAAAAGCCAAAACGAAAAGCTAATAAGAAAT
TGTCACCCAAAAGAAAACCTAGGGAAAGCTCTGATGAGGAAttgcaaaca
aaaaagaaagtggTAAAATCCCAATCATCCAGCAAACAAGAATCTAACAA
AAAAGGAAGAAAGCGTTCAAAATCCACAGATGAATCAGACAGTGGATCAG
AATATGAGAAAAAACAGAAGAAGAGTGCAAAGAAGTCAAAACAACGTAAA
AATTCCAGCTCAGAAAACTCTGACGCTAGCAACAGTGGCCCTATTAAATC
TGAGAAAAAGATTGAAGCTGAGGAAAAGCCTCTGAAAAAGCCTCccacga
aaaagaaaaatatttttgctagaCGAAATACAGCAGAAGACATTGAAGCT
GCAAGAGAGAGATATTTAGCCCGAAAGCAAGCTTTATCAAGGGCTGAGTA
ATGTAAATTTTATTATAAGATTTTATCACTTTTATAGCTGTATTTTTAAA
CAAAGTTCAAATCTTTAGTCTTTTTCTTTCCCTTCTCCTCAGAGATCTAA
ACAAAAGGCAGTTTGTTAATAGAAAAATCACAATTC Run BLAST on NCBI transcript from alignment at scaffold_491:338071..340956- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068996 ID=TCONS_00068996|Name=TCONS_00068996|organism=Clytia hemisphaerica|type=transcript|length=2886bp|location=Sequence derived from alignment at scaffold_491:338071..340956- (Clytia hemisphaerica)
TTTTTGACTAGTCCTTCAAAGGTGCATGCTGCTAGATCCTCGGTTATGTG
ACTTGATTGGTGACCTAGCTCAAGCGAACACAAATCTTTGAAAAGTGCGC
ACGCTTCGCTGTGGCAGTTCTCTCCAGTAGTTTCGTTTTCAGTCGTTCAA
AGAAACAGAACAGAAGCGCCAGAACAAAAAAAACACAAAAAAACAGCAAG
AATCCTGCTGTAAAAATGTCTGAACAGAAGTATGGTCTTTTTATGAAGAG
TTTGCAAAAGAAGAAAGGCTTGAATAAAGTACACTCTGCGTTTGGAAATG
ATAGCAGCAGTGATGAAGGTAATTCAAAGAAAAACAACAAGAAGTCTGCA
ACAGACGAAAGTTCCAAAAAACTTTCCATGAAACAAACAAAAATTGACAT
GGAAAAAGCTCTGAATGAAGACCCAACTGTGTATGAATATGATGAGGTTT
ATGATCAAATGGAAGAGAAAAAGAAAGAGACTGTTGCTGCAAAGATTCAA
GCTGACAAAAAGAGTAAATATATTTCAAAACTTTTGAAATCTACTGAGAG
TCGGAAACTTGAAGAAGAGAGGCGTAAGGAACGTAAAATTCAAAAAGAGA
GAGAGGCTGAGGGGGAGGAGTTTGCAGATAAGGAAGAGTTTGTTACATCT
TCTTACAAGAAGAAAATTGAGGAAAGAAAAGCAGAAGAAGAACGTCAAAG
AAAACAAGACGAGGCCGATGCTGCCAATGATGTTACCAAACAAAAAGATC
TTGGAATGTTTTATAAAAATCTCATGAACAAAAACACTTCAATGGGAGGA
AATGCTTCTGACTCAGAACATGATACTAAGTCAAAGAAAAAAGAGGAGAA
CATCAAGTCATCTTCTAAATCAGCTGCAAAATCTAAAAACGAATCATCAG
AGGGGGAAGAACATGAGACAGACTCTCATAGATTCAAGAAGAGCACCAAA
AGAGGTTATCGAAAAGTTGAAAAAAGTTACAGCAGTGAAAGTAGTGCAGA
AGAAGAGGATGCTAAGCAGCTGAAAGTAAAGAACAAGAAAAAGTTAAGCT
GTAACAATTCAAGTGATGACTCTGATTATGAAAAGGATAAAAGGTCTGGA
AAAAAAGCCCCTTCCAAAAAGAAAAGACGAGACTCTTCTTCAGAATACTC
ATCTGAAAGCAGTAGTGAAGATGAAAAGCCAAAACGAAANTTATGTGACT
TGATTGGTGACCTAGCTCAAGCGAGCACAAATCTTTGAAAAGTGCGCACG
CTTCGCTGTGGCAGTTCTCTCCAGTAGTTTCGTTTTCAGTCGTTCAAAGA
AACAGAACAGAAGCGCCAGAACAAAAAAAACACAAAAAAACAGCAAGAAT
CCTGCTGTAAAAATGTCTGAACAGAAGTATGGTCTTTTTATGAAGAGTTT
GCAAAAGAAGAAAGGCTTGAATAAAGTACACTCTGCGTTTGGAAATGATA
GCAGCAGTGATGAAGGTAATTCAAAGAAAAACAACAAGAAGTCTGCAACA
GACGAAAGTTCCAAAAAACTTTCCATGAAACAAACAAAAATTGACATGGA
AAAAGCTCTGAATGAAGACCCAACTGTGTATGAATATGATGAGGTTTATG
ATCAAATGGAAGAGAAAAAGAAAGAGACTGTTGCTGCAAAGATTCAAGCT
GACAAAAAGAGTAAATATATTTCAAAACTTTTGAAATCTACTGAGAGTCG
GAAACTTGAAGAAGAGAGGCGTAAGGAACGTAAAATTCAAAAAGAGAGAG
AGGCTGAGGGGGAGGAGTTTGCAGATAAGGAAGAGTTTGTTACATCTTCT
TACAAGAAGAAAATTGAGGAAAGAAAAGCAGAAGAAGAACGTCAAAGAAA
ACAAGACGAGGCCGATGCTGCCAATGATGTTACCAAACAAAAAGATCTTG
GAATGTTTTATAAAAATCTCATGAACAAAAACACTTCAATGGGAGGAAAT
GCTTCTGACTCAGAACATGATACTAAGTCAAAGAAAAAAGAGGAGAACAT
CAAGTCATCTTCTAAATCAGCTGCAAAATCTAAAAACGAATCATCAGAGG
GGGAAGAACATGAGACAGACTCTCATAGATTCAAGAAGAGCACCAAAAGA
GGTTATCGAAAAGTTGAAAAAAGTTACAGCAGTGAAAGTAGTGCAGAAGA
AGAGGATGCTAAGCAGCAGAAAGTAAAGAACAAGAAAAAGTTAAGCCGTA
ACAATTCAAGTGATGACTCTGATTATGAAAAGGATAAAAGGTCCGGAAAA
AAAGCCCCTTCCAAAAAGAAAAGACGAGACTCTTCTTCAGAATACTCATC
TGAAAGCAGTAGTGAAGATGAAAAGCCAAAACGAAAAGCTAATAAGAAAT
TGTCACCCAAAAGAAAACCTAGGGAAAGCTCTGATGAGGAATTGCAAACA
AAAAAGAAAGTGGTAAAATCCCAATCATCCAGCAAACAAGAATCTAACAA
AAAAGGAAGAAAGCGTTCAAAATCCACAGATGAATCAGACAGTGGATCAG
AATATGAGAAAAAACAGAAGAAGAGTGCAAAGAAGTCAAAACAACGTAAA
AATTCCAGCTCAGAAAACTCTGACGCTAGCAACAGTGGCCCTATTAAATC
TGAGAAAAAGATTGAAGCTGAGGAAAAGCCTCTGAAAAAGCCTCCCACGA
AAAAGAAAAATATTTTTGCTAGACGAAATACAGCAGAAGACATTGAAGCT
GCAAGAGAGAGATATTTAGCCCGAAAGCAAGCTTTATCAAGGGCTGAGTA
ATGTAAATTTTATTATAAGATTTTATCACTTTTATAGCTGTATTTTTAAA
CAAAGTTCAAATCTTTAGTCTTTTTCTTTCCCTTCTCCTCAGAGATCTAA
ACAAAAGGCAGTTTGTTAATAGAAAAATCACAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068996-exon-scaffold_491-1575043694:338071..340956 | TCONS_00068996-exon-scaffold_491-1575043694:338071..340956 | Clytia hemisphaerica | exon |
| TCONS_00068996-exon-scaffold_491-1510915933:338071..340956 | TCONS_00068996-exon-scaffold_491-1510915933:338071..340956 | Clytia hemisphaerica | exon |
| TCONS_00068996-exon-scaffold_491-1491911889:338071..340956 | TCONS_00068996-exon-scaffold_491-1491911889:338071..340956 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_491 | supercontig | scaffold_491:338071..340956 - |
Blast
The following BLAST results are available for this feature:
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