|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068995 ID=TCONS_00068995|Name=TCONS_00068995|organism=Clytia hemisphaerica|type=transcript|length=2497bpRun BLAST on NCBI protein sequence of TCONS_00068995-protein >TCONS_00068995-protein ID=TCONS_00068995-protein|Name=TCONS_00068995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp MSSILQQAQAQNAANIDKNEKQSLLAVLQFLKKKNLKEAEEVLRREAGLDRun BLAST on NCBI transcript from alignment at scaffold_491:324116..337791- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068995 ID=TCONS_00068995|Name=TCONS_00068995|organism=Clytia hemisphaerica|type=transcript|length=13676bp|location=Sequence derived from alignment at scaffold_491:324116..337791- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_491:324116..337791- >TCONS_00068995 ID=TCONS_00068995|Name=TCONS_00068995|organism=Clytia hemisphaerica|type=CDS|length=24123bp|location=Sequence derived from alignment at scaffold_491:324116..337791- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068995 vs. Swiss-Prot (Human)
Match: TAF5 (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3) HSP 1 Score: 431.409 bits (1108), Expect = 1.456e-163 Identity = 229/511 (44.81%), Postives = 328/511 (64.19%), Query Frame = 2
Query: 77 NEKQSLLAVLQFLKKKNLKEAEEVLRREAGL--------------DSVSAEV------------------------------VTTSAN--------------NEPDLTNVLSEYESDGDPLRYEEYYQSLQKFVEQSLDTHKHELSLVLYPVFVHLYLECIYKGYETEAEKFYEKFSKYQESYRNEDLEKLRILKRKNHLQTNNEYLNLFRSSKYVIKMARESFNVLKKHLQANQQEVLLNLIQQHFHLDVFDGRPRSKRAIEATTGYLTGEAPPDANKVKMFYGMPFDSELIHALNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHATDPHAPKADRIPYPKLKDHEKRSKILKYKEVSKRLHVGREKIPSICFYTFLHSTEKINCLDISEDSSLIACGFDDSSIKIWSLTPSKLRTLKTPNELSKIDKEADDVLERIMNDKSATDCRTLCGHSGPVYGLNFNSDKSFLISSSEDGTIRLWSLHTFTNLVVYKGHLYPVWDVQFS 1435
+++Q+LLAVLQFL++ L+EAEE LRREAGL DS AEV V+ SA+ ++PD++ VLS Y GDP YEEYY L+ F+E SLD H+ ELS + YP+FVH+YLE +Y +E EA+ F+EKF QE Y +DL L L +K H++ N L+ FR+SK+V++++R+S+ +LK+HLQ Q + N++Q+H ++D+FDG PRSK+ I+A G L GEA +ANK K+F+G+ + E+ L+D+ + E E +K +K K DP+AP +RIP P+LKD +K KI+ KE +KR+ +G + +PSICFYTFL++ + + +D+++DSSLIA GF DS++++WS+TP KLR++K ++LS IDKE+DDVLERIM++K+A++ + L GHSGPVYG +F+ D+++L+SSSEDGT+RLWSL TFT LV YKGH YPVWD QFS
Sbjct: 92 HDRQTLLAVLQFLRQSKLREAEEALRREAGLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAAPDPPGTGASGATVVSGSASGPAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLD-FRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQ-------DPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFS 594 HSP 2 Score: 165.622 bits (418), Expect = 1.456e-163 Identity = 79/163 (48.47%), Postives = 110/163 (67.48%), Query Frame = 1
Query: 1444 FHPNGNYIATGSSDRTVRIWDLSTGNSVRLFTGHKAGVQTVKFSPDGRYLVSAGLDKRILLWDVAESAPVADFNGHTACINTLCFSREGHVLASGGLDNCIKLWDIKRACHMDDDLDQKPAS-----STNSYE--IGSYVTKSTPVHKLHFTRKNLLLGSGPF 1911
FHPN NY+ATGS+DRTVR+WD+ GN VR+FTGHK + ++ FSP+GR+L + D R+LLWD+ V + GHT + +L FSR+G +LASG +DN ++LWD +A + D A+ NS E +G+Y+TKSTPV LHFTR+NL+L +G +
Sbjct: 635 FHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAY 797 The following BLAST results are available for this feature:
BLAST of TCONS_00068995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.