|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068991 ID=TCONS_00068991|Name=TCONS_00068991|organism=Clytia hemisphaerica|type=transcript|length=608bp
CGCTATTCGAACAATCACCGAAAAACCCATTAAATATCTCTTGATTTCAC
ACAATCATTATGATCATGCGAGGGGAGGGAAAGTTTTCAGTGATATAGGA
GCAACGGTTATCGCTCACCAAGAAGCGGCCGAATGGATGGAAGAATACCC
AACGGATGATCTGTATTTACCTGACCGAACGTGGAGAGGGAAGAAACAAA
CTCTATGTCTAGGTGAAGGACGAGTTGATCTTCACTATTTTGGAATCAAT
CACGGGTATGGAATGACCGTCTTTGTTTACCAATCACCAACAGGAACGAC
TGAAAACAATGTGGCTTACATCTCTGATCTAGTTCTACCAAACCGTGTCT
TCTTTGCTAGCATGCCTGACTACAACACAGTGGAAACCATACGCACTCTA
CGTCAGATTCAAAAACTTCCCTTTAATAAAGCTGTTTTTAGTCATTCGAA
TATTGGTGATCGACCAGACGGTTCTATGAAAGAAGTCAGCGATAAACTGC
AATACATGCTGGATATTGAAAACGCTGTTAAACAAGGCATCGCTGAAGGA
AAAAATCTACTTTCCAATCCTGGTCTTGTGCAGCTTCCACAATATCAAAA
CCTGGGAG Run BLAST on NCBI protein sequence of TCONS_00068991-protein >TCONS_00068991-protein ID=TCONS_00068991-protein|Name=TCONS_00068991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
AIRTITEKPIKYLLISHNHYDHARGGKVFSDIGATVIAHQEAAEWMEEYP
TDDLYLPDRTWRGKKQTLCLGEGRVDLHYFGINHGYGMTVFVYQSPTGTT
ENNVAYISDLVLPNRVFFASMPDYNTVETIRTLRQIQKLPFNKAVFSHSN
IGDRPDGSMKEVSDKLQYMLDIENAVKQGIAEGKNLLSNPGLVQLPQYQN
LG Run BLAST on NCBI transcript from alignment at scaffold_491:236358..237736- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068991 ID=TCONS_00068991|Name=TCONS_00068991|organism=Clytia hemisphaerica|type=transcript|length=1379bp|location=Sequence derived from alignment at scaffold_491:236358..237736- (Clytia hemisphaerica)
CGCTATTCGAACAATCACCGAAAAACCCATTAAATATCTCTTGATTTCAC
ACAATCATTATGATCATGCGAGGGGAGGGAAAGTTTTCAGTGATATAGGA
GCAACGGTTATCGCTCACCAAGAAGCGGCCGAATGGATGGAAGAATACCC
AACGGATGATCTGTATTTACCTGACCGAACGTGGAGAGGGAAGAAACAAA
CTCTATGTCTAGGTAAGCTCTAACTGACTTTTTTGTTGGATGCCAAAAAT
TTGATATTCATGATTGTAACAACATGAAATTTACTTTAGCCCCTTAGCTC
TAAAACATCAGACAGCCAACGTAAAACATGTTGCATCATGTTTTCAAGCT
TACACATTTCTATGCTATGCTGTTATCTTTTCTTTTTTCGCTCGAACATT
TTCATCTTCATTCAGCATGTTTCCGGCTACCTATATAAGATAGATCCATT
CAGCATGTTGCTTGTTCAGTTAGTAATAACAATTGTGCTTCGTCGTTTAC
TATTTCATTCAATAANCCTATGTCTAGGTAAGCTCACTGACTTTTTTCTT
GGATGCCAAAAATTTGATATTCATGATTGTAACAACATGAAACTTACTTT
AGCCACTTAGCTCTAAAACATCAGAAAGCCAACGTAGAACAAGTTGCATC
ATGTTTTCAAGCTTACACATTTCTATGCTATGCTGTTATCTTTTCTTTTT
TCGCTCGAACATTTTCATTTTCATTCAACATGTTTCCGACTACCTACCTT
ATTGGAACTAATTTTCGCGGGAACTAATTTTCGCGGTAGAAAAAAAATAT
CCGAAAAATTGATTTTGACGAAAAACCGCGAAAAACGCTAAAATTAAAAC
CCGCGAAAATTAGTTCCAATAAGGTATATAAGGTAGGTCCATTCAGAATA
TTGCTTGTTCAGTTAGTAACAACAACTGTGCTTCATCATTTACTATTTTA
TTCAATAAACGATACCTTTTTTCTTTGTTACAGGTGAAGGACGAGTTGAT
CTTCACTATTTTGGAATCAATCACGGGTATGGAATGACCGTCTTTGTTTA
CCAATCACCAACAGGAACGACTGAAAACAATGTGGCTTACATCTCTGATC
TAGTTCTACCAAACCGTGTCTTCTTTGCTAGCATGCCTGACTACAACACA
GTGGAAACCATACGCACTCTACGTCAGATTCAAAAACTTCCCTTTAATAA
AGCTGTTTTTAGTCATTCGAATATTGGTGATCGACCAGACGGTTCTATGA
AAGAAGTCAGCGATAAACTGCAATACATGCTGGATATTGAAAACGCTGTT
AAACAAGGCATCGCTGAAGGAAAAAATCTACTTTCCAATCCTGGTCTTGT
GCAGCTTCCACAATATCAAAACCTGGGAG Coding sequence (CDS) from alignment at scaffold_491:236358..237736- >TCONS_00068991 ID=TCONS_00068991|Name=TCONS_00068991|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_491:236358..237736- (Clytia hemisphaerica)
GTGAAGGACGAGTTGATCTTCACTATTTTGGAATCAATCACGGGTATGGA
ATGACCGTCTTTGTTTACCAATCACCAACAGGAACGACTGAAAACAATGT
GGCTTACATCTCTGATCTAGTTCTACCAAACCGTGTCTTCTTTGCTAGCA
TGCCTGACTACAACACAGTGGAAACCATACGCACTCTACGTCAGATTCAA
AAACTTCCCTTTAATAAAGCTGTTTTTAGTCATTCGAATATTGGTGATCG
ACCAGACGGTTCTATGAAAGAAGTCAGCGATAAACTGCAATACATGCTGG
ATATTGAAAACGCTGTTAAACAAGGCATCGCTGAAGGAAAAAATCTACTT
TCCAATCCTGGTCTTGTGCAGCTTCCACAATATCAAAACCTGGGAGCTAT
TCGAACAATCACCGAAAAACCCATTAAATATCTCTTGATTTCACACAATC
ATTATGATCATGCGAGGGGAGGGAAAGTTTTCAGTGATATAGGAGCAACG
GTTATCGCTCACCAAGAAGCGGCCGAATGGATGGAAGAATACCCAACGGA
TGATCTGTATTTACCTGACCGAACGTGGAGAGGGAAGAAACAAACTCTAT
GTCTAGGTGAAGGACGAGTTGATCTTCACTATTTTGGAATCAATCACGGG
TATGGAATGACCGTCTTTGTTTACCAATCACCAACAGGAACGACTGAAAA
CAATGTGGCTTACATCTCTGATCTAGTTCTACCAAACCGTGTCTTCTTTG
CTAGCATGCCTGACTACAACACAGTGGAAACCATACGCACTCTACGTCAG
ATTCAAAAACTTCCCTTTAATAAAGCTGTTTTTAGTCATTCGAATATTGG
TGATCGACCAGACGGTTCTATGAAAGAAGTCAGCGATAAACTGCAATACA
TGCTGGATATTGAAAACGCTGTTAAACAAGGCATCGCTGAAGGAAAAAAT
CTACTTTCCAATCCTGGTCTTGTGCAGCTTCCACAATATCAAAACCTGGG
AGCTATTCGAACAATCACCGAAAAACCCATTAAATATCTCTTGATTTCAC
ACAATCATTATGATCATGCGAGGGGAGGGAAAGTTTTCAGTGATATAGGA
GCAACGGTTATCGCTCACCAAGAAGCGGCCGAATGGATGGAAGAATACCC
AACGGATGATCTGTATTTACCTGACCGAACGTGGAGAGGGAAGAAACAAA
CTCTATGTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068991-exon-scaffold_491-1575043694:237525..237736 | TCONS_00068991-exon-scaffold_491-1575043694:237525..237736 | Clytia hemisphaerica | exon |
| TCONS_00068991-exon-scaffold_491-1575043694:236358..236753 | TCONS_00068991-exon-scaffold_491-1575043694:236358..236753 | Clytia hemisphaerica | exon |
| TCONS_00068991-exon-scaffold_491-1510915933:237525..237736 | TCONS_00068991-exon-scaffold_491-1510915933:237525..237736 | Clytia hemisphaerica | exon |
| TCONS_00068991-exon-scaffold_491-1510915933:236358..236753 | TCONS_00068991-exon-scaffold_491-1510915933:236358..236753 | Clytia hemisphaerica | exon |
| TCONS_00068991-exon-scaffold_491-1491911889:237525..237736 | TCONS_00068991-exon-scaffold_491-1491911889:237525..237736 | Clytia hemisphaerica | exon |
| TCONS_00068991-exon-scaffold_491-1491911889:236358..236753 | TCONS_00068991-exon-scaffold_491-1491911889:236358..236753 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_491 | supercontig | scaffold_491:236358..237736 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001279 | Metallo-B-lactamas |
Blast
The following BLAST results are available for this feature:
|
