TCONS_00068987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068987
Unique NameTCONS_00068987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068987 ID=TCONS_00068987|Name=TCONS_00068987|organism=Clytia hemisphaerica|type=transcript|length=1307bp
ATTTTCCCcttggaaaaatataaaaacacccgctggaaatttttctcggg
ttaccctctggaaatgttcgtcccccctgtatggatataaaatggaccGG
CCCAATGAGTGAGATCCAAGCAAGTAGGTTGAATGACCCGTCTCTGACAT
GAACGCAATTTTAATCTACGCCaagaaataaaagaaagacgAATCACATT
CATGCGAGTAATAACTAAATAGACTAGCCCAGTTCCACATGAGACTGAAA
GTTTTACGTCTGCCAGAGTTCTAATAAGTCCGAAGATTatacttgcttat
aaaaaaacaggtGCCTACTTTTGTCACTCTcatctttaattttattttca
aagaacaaatacaaattataaaacataaacaaaaaatcgATGAGAAAATG
GGCTGCTGCTGTTCCAAGACGTGTGGAGATAACTGCTGCGTGGAATGTAC
TCAAAAATGTGCAGTCGGTAGTTACCTGTGGAGAGGGAGAGCTCGAAATG
TTATCGCTGTCGTCACGTCGAGCAGGAAAGTCGAGAAACGGGGTAGCGGA
TGGGTTATTCTAACCAATGACGGGCACTTGTTTTATTACTTGGACGCGGA
CGGCGCTACGGAATGGTACGGCGCAAATGTTTACCTTGAGTTCGGTTCCA
CAATGTCGTACGTTTTCGATGTGCCACTAGGCCTGGTAACTAAGGTTGGG
TACGAGAAAATGATTGGTGATGACCGTGTGACGTCACAATCTTGGTTTCA
TGATTCGAAAGCAGTAGAGGGCGGTGAAAGTTATTTAGCGTTAAACATGA
CTTTCACTAACGGCGCTGAGTTGGTTTTGTACATTTGTATGCAAGGGTGA
CTGGGGCTTGACTGAAGAGGATTCGATGGCTGACATAAAAAGACAAGCAG
AATTTAAGAAAACGTTTTTACCAAGTGCAAAAGCACAAATACGCGTGCTC
AACCAATCGTATCATGATATGCTCCAACAATTCTTAGTGATGTTGAATAG
CCATTCGGACGTCTCCTTACGTTTCTTGTGTTTCCGATTGGACTTTAACG
AACATTATAAGAAAATGGAACCCAAGTTACGATCACCAATGAAATACAGT
TTCCGGAAAAAGAGAGCGGATGTTCCTATCTTCCGTGGAGAAACTNTAAC
TACTTTTCATCATTTATAGGGTGACTGGGGCTTGACTGAAGAAGATTCGA
TGGCTGACATAAAAAGACAAGCAGAATTCAAGAAAACGTTTTTACCAAGT
GCAAAAGCACAAATACGCGTGCTCAACCAATCGTATCATGTAAGCCGTTT
TGTTATt
Run BLAST on NCBI

protein sequence of TCONS_00068987-protein

>TCONS_00068987-protein ID=TCONS_00068987-protein|Name=TCONS_00068987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MGCCCSKTCGDNCCVECTQKCAVGSYLWRGRARNVIAVVTSSRKVEKRGS
GWVILTNDGHLFYYLDADGATEWYGANVYLEFGSTMSYVFDVPLGLVTKV
GYEKMIGDDRVTSQSWFHDSKAVEGGESYLALNMTFTNGAELVLYICMQG
Run BLAST on NCBI

transcript from alignment at scaffold_491:155849..166317-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068987 ID=TCONS_00068987|Name=TCONS_00068987|organism=Clytia hemisphaerica|type=transcript|length=10469bp|location=Sequence derived from alignment at scaffold_491:155849..166317- (Clytia hemisphaerica)
ATTTTCCCCTTGGAAAAATATAAAAACACCCGCTGGAAATTTTTCTCGGG
TTACCCTCTGGAAATGTTCGTCCCCCCTGTATGGATATAAAATGGACCGG
CCCAATGAGTGAGATCCAAGCAAGTAGGTTGAATGACCCGTCTCTGACAT
GAACGCAATTTTAATCTACGCCAAGAAATAAAAGAAAGACGAATCACATT
CATGCGAGTAATAACTAAATAGACTAGCCCAGTTCCACATGAGACTGAAA
GTTTTACGTCTGCCAGAGTTCTAATAAGTCCGAAGATTATACTTGCTTAT
AAAAAAACAGGTGCCTACTTTTGTCACTCTCATCTTTAATTTTATTTTCA
AAGAACAAATACAAATTATAAAACATAAACAAAAAATCGATGAGAAAATG
GGCTGCTGCTGTTCCAAGACGTGTGGAGATAACTGCTGCGTGGAATGTAC
TCAAAAATGTGCAGTCGGTAGTTACCTGTGGAGAGGGAGAGCTCGAAATG
TTATCGCTGTCGTCACGTCGAGCAGGAAAGTCGAGAAACGGGGTAGCGGA
TGGGTTATTCTAACCAATGACGGGCACTTGTTTTATTACTTGGACGCGGA
CGGCGCTACGGAATGGTACGGCGCAAATGTTTACCTTGAGTTCGGTTCCA
CAATGTCGTACGTTTTCGATGTGCCACTAGGCCTGGTAACTAAGGTTGGG
TACGAGAAAATGATTGGTGATGACCGTGTGACGTCACAATCTTGGTTTCA
TGATTCGAAAGCAGTAGAGGGCGGTGAAAGTTATTTAGCGTTAAACATGA
CTTTCACTAACGGCGCTGAGTTGGTTTTGTACATTTGTATGCAAGGTGCG
TACGATTTATTGAATCTCATCCAGGAAATTCTGAGACATCAATCTAGCAC
GTCTCTTCCCAAAGATTTCAAAATTAGTTATGTGGATTATAACATAAATA
GGAGTGTTTGCGTTCCAGCGCAAACTTTACAAGCACCAATTCTGTTTGGC
TTCACTAATACCAATCGTCGTGGAATGCCAACGAGTCGGCCAATCGTTTA
AACGGTCGTGGCTTCTTCGTACGGGTGACAGTAGATCTTGTATTTTTCTA
TCTTTGATCTGGAGTTTTCTGGAGTTTTCTGAACCTTTAGAATGTTTCTA
AGTTGGACTTTTAGAGTTCAATAACAAAAAACTACTTCTACTTTCACCCG
TACGAAGGAGTCAGCACCCGTTTAAACGGCGACTTTATTATGGAACCTTA
GAGGTTAGATTATGGTCGTGAGTTTTTTCTTTATATTTTAAATGAACCTG
TAACTATGAATTATTGTGCTTGTAATTATTATTATTTATAGAACGATGGC
CGAGTGGTCATTTCTCAACCTGGAACCCAGTCCTTTAAGTCGTTTTTTTT
TGTGATTTTGATAGCGCTTGAAAAGGTTTCTATCATGTCCACCAGTAAAG
ACTAAGAGTGGTGCAAGTGGCTCTTGGTATGACTGTAGTCATTGCCCCAA
ACTAGGGGTTCACAGTTCGAATCCCCGTACCATCCAATGGCCCGTTCAGT
TCATAGATAGCAGAATCGGCTGGCCATGGAACCGTGAAAACAATCGAAAG
ACTGTTCAAAAACTCCTTAATTAGTGGGCTATCCACGTAAGATATCGACT
CTATTTTTACAGACAAAAATGTCTGCACGATGTCTTCATATCTATCTTCT
AAGCACAAACCAAGCTAAAAATTGACTTCCCCCCTCATTTTGTCGGATTT
TTTAAACATCAATTGTTTCAATTTTTTGGTATTTTTTTATCTTTTATTCC
TTATCTTCTAGTAGAATTTAAATTGTATTGTGTCTTTGTATTTAAATTTT
TTCATCGAATTTGGCACGTAAAAATTATTTCTTTATAGTAAAGTGTTCTT
TCTACCTACGAGCCTCTGCATTTTAATGTAATATTTACTCTTAGGCAAAG
ACAAGGGGCAGGGTTTTGTTTTAAATAGCAATGGGCTTGTAATGTCTTTC
AAATAAGTTTAACAGCCGGGAAGTTAAGATCGGCATTCCCCACAGGAAAT
GATGAAATACTAAGAAGAGAGGTGTATGAAATAAGTGGATATAACTAGTG
TTCGTTAAGCATTTGTGAAATTCATGATATGCACCATTGTAATGGACCCA
GCAGCTGATTGGTTGCATGTGACGTATTAAATGATTTTACGTTACTTAGA
ACCAATCACCTTTGGGTCCGTGATGTAATGTCAGAAGATATTGCAATGTT
GCATATCATGAAATTAAAAAGGTAAAAGAATTCCTCTGTACAAGAGGATA
TGTTAGGTATGACATATTGAAAAGCTCCACTTATGTATATGGAGTACATG
TTTTTTTTTTATAAGCAAGTGTATGCCCCTAGGTCAGGCTAGTGTATGCT
TAAGTTCTTAAAGCATCCAGGCATAGTTTATGCTTATTATATCCTTAAGA
ATCATGCTTATGATTCACCCAGAGCCAAGTTTTTTAATGAAATTTCAGAA
ATTTTGTAAAAAATTTGTTCAGATTTTGGGAGCAGTGGAATGTAGCTAGC
CGTGGAATGTCTTATTTCTTACTTGACCNNNNNNNNNNNNNNNNNNNNNN
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TCTTTTATCACATACCAGAATCAAAAGGGCAACAACCTCTACATACACCC
ATCAAATTTAAAGCTTTAGGAGGAGACTAGATTCAAGTTCCCCAAGAAGG
AGTGACGTCATTTGTCTGTATCTGTCTAGATCTATTCAAAGATACTAGAA
CTTCTTACTTACTATTACCCTGTCTCCTCATGTTTCATAGGTGTATAGAA
AGATTCTTATGTTGATGTCGGTATACTTCTTTTGGCAACTTGCTTAACTG
CTTTTGATAATTTACTGACTGAGGCTTGACCTAAGATTCCCTTTTGATGT
CAGTTCTTTTATTAACTCGCTTAACTGATTTTCATCATTTACAGGGTGAC
TGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAACTTGCTGAACTACTTTTGATCATTTACAGG
GTGACTGAGGCTTGACCTAAGATTCCCTTTTGATGTCAGTTCTTTTGGCA
ACTCGCTTAACTGATTTTTATCATTTACAGGGTGACTGAGGCTTGACCTA
AGATTCCCTTTTGATGTCAGTTCTTTTGTTAACTCGCTGAACTACTTTTG
ATCATTTACAGGGCGACTGAGGCTTGACCTAAGATTCCCTTTTGATGTCA
GTTCTTTTGGCAACTCGCTTAACTGATTTTCATCATTTACAGGGTGACTG
AGGCTTGACCTAAGATTCCCTTTTGATGTCAGTCCTTTTGTTAACTCGCT
TAACTGATTTTCATAATTTACAGGGTGGCTGAGGCTTGACCTAAGATTCC
CTTTTGATGTCAGTTCTTTTGGCAACTCGCTTAACTGATTTTCATCATTT
ACAGGGTGACTGAGGCTTGACCTAAGATTCCCTTTTGATGTCAGTTCTTT
TGGCAACTTGCTGAACTACTTTTGATCATTTACAGGGTGACTAGGGCTTG
ACCTAAGATTCCCTTTTGATGTCAGTTCTTTTGTTAACTCGCTGAACTAC
TTTTGATCATTTACAGGGTGACTGGGGCTTGACTGAAGATTCCCTTTTGA
TGTCAGTTCTTTTGGCAACTTGCTGAACTACTTTTGATCATTCACAGGGT
GACTGAGGCTTGACCTAAGATTCCCTTTTGATGTCAGTTCTTTTGGCAAC
TTGCTGAACTACTTTTGATCATTTACAGGGTGACTGAGGCTTGACCTAAG
ATTCCCTTTTGATGTCAGTTCTTTTGGCAACTTGCTGAACCACTTTTGAT
CATTTACAGGGTGACTGAGGCTTGACCTAAGATTCCCTTTTGATGTCAGT
TCTTTTGGCAACTTGCTGAACTGATTTTCATCATTTACAGGGTGACTGAG
GCTTGACCTAAGATTCCCTTTTGATGTCAGTTCTTTTGGCAACTCGCTTA
ACTGATTTTCATCATTTACAAGGTGACTGAGGCTTGACCTAAGATTCCCT
TTTGATGTCAGTTCTTTTGTTAACTCGCTGAACTACTTTTGATCATTTAC
AGGGTGACTGAGGCTTGACCTAAGATTCCCTTTTGATGTCAGTTCTTTTG
GCAACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AGTTCTTTTGGCAACTTGCTGAACTACTTTTGATCATTTACAGGGTGACT
GAGGCTTGACCTAAGATTCCCTTTTAATGTCAGTTCTTTTGGCAACTTGC
TTAACTGATTTTCATCATTTACAGGGTGACTGAGGCTTGACCTAAGATTC
CCTTTTGATTTCAGTTCTTTTGGCAACTTGCTTAACTACTTTTGATCATT
TACAGGGTGACTGAGGCTTGACCTAAGATTCCCTTTTGATGTCAGTTCTT
TTGTTAACTCGCTTAACTGTTTTTCATCATTTACAGGGTGACTGAGGCTT
GACTTAAGATTCCCTTTTGATGTCAGTTCTTTTGTTAACTCGCTTAACTG
ATTTTCATCATTTACAGGGTGACTGAGGCTTGACCTAAGATTCCCTTTTG
ATGTCAGTTCTTTTGGCAACTTGCTTAACTACTTTTGATCATTTACAGGG
TGACTGGGGCTTGACTGAAGAGGATTCGATGGCTGACATAAAAAGACAAG
CAGAATTTAAGAAAACGTTTTTACCAAGTGCAAAAGCACAAATACGCGTG
CTCAACCAATCGTATCATGTAAGCTGTTTTGTTATTCAAACGAAAGTGAT
TTTATCTGCAAGTAATTACCTTTAGGAAACACTTTAAATCTGTCATGGTG
CCGCATGGAAAATTTCACCGAGTTATAAATTGAACAATGAATTTTTCACT
AATTATCAAAATGATGTGGGATTTTGTGTAGAAACAAACTGAGACGATTA
CTAGCCTCAAATTTCAGAAATGGCCCCGCATTAAAACATTTTGAAAATAT
TTAAGCCTGAATTTCATGAGGAAAAAAATTGCAGCCGTTTCAGCTTTATC
TTCGAGCATATTTTAATACTCGGCGTACGTATTCACTTTAAAGGCCATGT
ATCCGTTAGAGGATTTGTCTATGTCGGTGCACCGCTATGATCTATGTCAT
CCTGATTTAGGATGAATATTAAATGAGCTTTTGAGCGCACTGAGTGGCTT
AAGCTAAACAATCGCCAAAGTCAAGTGCCAAACATAAACATATACATTAG
AACCCACTTTCGCTTCCGCTTTCGCTTTAAAGCAAAAGACAACGCGGTTC
TGAATGTTTTAGCTGAAGAACAAGGTCAGATGGTCACATTCGCCATAGCA
ATTTAGAGCAAAGCGTGGTATGCGTAGAATAGACGATCCGTTATGAGATT
AAGTTTCAGCCATTATCGACTGGCTTTCATACAAAAAAGCGTGTATATTT
TTTAAATGATTTATTTTTTCATCATAGGATATGCTCCAACAATTCTTAGT
GATGTTGAATAGCCATTCGGACGTCTCCTTACGTTTCTTGTGTTTCCGAT
TGGACTTTAACGAACATTATAAGAAAATGGAACCCAAGTTACGATCACCA
ATGAAATACAGTTTCCGGAAAAAGAGAGCGGATGTTCCTATCTTCCGTGG
AGAAACTNTAACTACTTTTCATCATTTATAGGGTGACTGGGGCTTGACTG
AAGAAGATTCGATGGCTGACATAAAAAGACAAGCAGAATTCAAGAAAACG
TTTTTACCAAGTGCAAAAGCACAAATACGCGTGCTCAACCAATCGTATCA
TGTAAGCCGTTTTGTTATT

Coding sequence (CDS) from alignment at scaffold_491:155849..166317-

>TCONS_00068987 ID=TCONS_00068987|Name=TCONS_00068987|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_491:155849..166317- (Clytia hemisphaerica)
GGTGAATGGGCTGCTGCTGTTCCAAGACGTGTGGAGATAACTGCTGCGTG
GAATGTACTCAAAAATGTGCAGTCGGTAGTTACCTGTGGAGAGGGAGAGC
TCGAAATGTTATCGCTGTCGTCACGTCGAGCAGGAAAGTCGAGAAACGGG
GTAGCGGATGGGTTATTCTAACCAATGACGGGCACTTGTTTTATTACTTG
GACGCGGACGGCGCTACGGAATGGTACGGCGCAAATGTTTACCTTGAGTT
CGGTTCCACAATGTCGTACGTTTTCGATGTGCCACTAGGCCTGGTAACTA
AGGTTGGGTACGAGAAAATGATTGGTGATGACCGTGTGACGTCACAATCT
TGGTTTCATGATTCGAAAGCAGTAGAGGGCGGTGAAAGTTATTTAGCGTT
AAACATGACTTTCACTAACGGCGCTGAGTTGGTTTTGTACATTTGTATGC
AAGGGTGAATGGGCTGCTGCTGTTCCAAGACGTGTGGAGATAACTGCTGC
GTGGAATGTACTCAAAAATGTGCAGTCGGTAGTTACCTGTGGAGAGGGAG
AGCTCGAAATGTTATCGCTGTCGTCACGTCGAGCAGGAAAGTCGAGAAAC
GGGGTAGCGGATGGGTTATTCTAACCAATGACGGGCACTTGTTTTATTAC
TTGGACGCGGACGGCGCTACGGAATGGTACGGCGCAAATGTTTACCTTGA
GTTCGGTTCCACAATGTCGTACGTTTTCGATGTGCCACTAGGCCTGGTAA
CTAAGGTTGGGTACGAGAAAATGATTGGTGATGACCGTGTGACGTCACAA
TCTTGGTTTCATGATTCGAAAGCAGTAGAGGGCGGTGAAAGTTATTTAGC
GTTAAACATGACTTTCACTAACGGCGCTGAGTTGGTTTTGTACATTTGTA
TGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042987XLOC_042987Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068987-proteinTCONS_00068987-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068987-exon-scaffold_491-1575043694:165473..166317TCONS_00068987-exon-scaffold_491-1575043694:165473..166317Clytia hemisphaericaexon
TCONS_00068987-exon-scaffold_491-1575043694:156900..157019TCONS_00068987-exon-scaffold_491-1575043694:156900..157019Clytia hemisphaericaexon
TCONS_00068987-exon-scaffold_491-1575043694:155849..156190TCONS_00068987-exon-scaffold_491-1575043694:155849..156190Clytia hemisphaericaexon
TCONS_00068987-exon-scaffold_491-1510915933:165473..166317TCONS_00068987-exon-scaffold_491-1510915933:165473..166317Clytia hemisphaericaexon
TCONS_00068987-exon-scaffold_491-1510915933:156900..157019TCONS_00068987-exon-scaffold_491-1510915933:156900..157019Clytia hemisphaericaexon
TCONS_00068987-exon-scaffold_491-1510915933:155849..156190TCONS_00068987-exon-scaffold_491-1510915933:155849..156190Clytia hemisphaericaexon
TCONS_00068987-exon-scaffold_491-1491911889:165473..166317TCONS_00068987-exon-scaffold_491-1491911889:165473..166317Clytia hemisphaericaexon
TCONS_00068987-exon-scaffold_491-1491911889:156900..157019TCONS_00068987-exon-scaffold_491-1491911889:156900..157019Clytia hemisphaericaexon
TCONS_00068987-exon-scaffold_491-1491911889:155849..156190TCONS_00068987-exon-scaffold_491-1491911889:155849..156190Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_491supercontigscaffold_491:155849..166317 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.8141	8.22406	6.03052	5.99938	9.3799	7.92005	11.2984	12.0769	7.61821	10.3127	6.41982	4.30755	13.7907	10.2327	7.92817	8.86007	6.36061	9.90174	17.5899	14.9314	4.41698	5.66354	10.169	10.1136	12.8786	12.8211	10.1237	11.8104	6.59046	5.61798
Blast
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BLAST of TCONS_00068987 vs. Swiss-Prot (Human)
Match: GCP3 (Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.485e-18
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 3 
Query:  843 KGDWGLTEEDSMADIKRQAEFKKTFLPSAKAQIRVLNQSYHDMLQQFLVMLNSHSDVSLRFLCFRLDFNEHYKKMEPKLRSPMKYSFRK 1109
            +G WG+T  +   + KR  EFK++ +P   +Q+R+L   Y  ++QQFLV+L + SD SLRFL FRLDFNEHYK  EP+LR  +    R+
Sbjct:  816 EGQWGVTAAEEEEENKRIGEFKES-IPKMCSQLRILTHFYQGIVQQFLVLLTTSSDESLRFLSFRLDFNEHYKAREPRLRVSLGTRGRR 903
The following BLAST results are available for this feature:
BLAST of TCONS_00068987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GCP32.485e-1847.19Gamma-tubulin complex component 3 OS=Homo sapiens ... [more]
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