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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068985 ID=TCONS_00068985|Name=TCONS_00068985|organism=Clytia hemisphaerica|type=transcript|length=4387bpRun BLAST on NCBI protein sequence of TCONS_00068985-protein >TCONS_00068985-protein ID=TCONS_00068985-protein|Name=TCONS_00068985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=853bp MRDGQKMALNATNLVVGDVVYIKAGDRVPADLRIVEARSLKVDNSSLTGERun BLAST on NCBI transcript from alignment at scaffold_491:98635..111247- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068985 ID=TCONS_00068985|Name=TCONS_00068985|organism=Clytia hemisphaerica|type=transcript|length=12613bp|location=Sequence derived from alignment at scaffold_491:98635..111247- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_491:98635..111247- >TCONS_00068985 ID=TCONS_00068985|Name=TCONS_00068985|organism=Clytia hemisphaerica|type=CDS|length=25620bp|location=Sequence derived from alignment at scaffold_491:98635..111247- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068985 vs. Swiss-Prot (Human)
Match: AT1A3 (Sodium/potassium-transporting ATPase subunit alpha-3 OS=Homo sapiens GN=ATP1A3 PE=1 SV=3) HSP 1 Score: 1313.52 bits (3398), Expect = 0.000e+0 Identity = 652/854 (76.35%), Postives = 733/854 (85.83%), Query Frame = 2
Query: 659 VMRDGQKMALNATNLVVGDVVYIKAGDRVPADLRIVEARSLKVDNSSLTGESEPQTRGPECTHENPLETKNIAFFSTNAVEGAGTGIVIQCGDNTVMGRIANLASGLGSGTTPIAQEIEHFIHLITGVAVFLGVTFLIISLAMDYHWLEAIIFLIGIIVANVPEGXXXXXXXXXXXXXKKMAAKNCLVKHLEAVETLGSTSVICSDKTGTLTQNRMTVAHMWFDNTIVEADTTEDQSGIAHDKGSQTWKALGKIGALCNRAEFRGEQRGVPILKKECAGDASETAILKFVELSVGSVEAIRKRNLKVSEIPFNSTNKYQVSIHEMEDPNDPRYLLVMKGAPERILERCSTIMHNGTEYPLDAERKEAFETAYXXXXXXXXXXXXFCHFYLPADKFPRGFEFDTEEPRNFPLENLCFIGLMSMIDPPRAAVPDAVNKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGSETVEDIGQRLNIPTELVNPRDAKACVVHGGQLKDMKQDKMDEILRTHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGITGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLMFILLSIPLPLGTITILCIDLGTDMLPAISLAYEKAESDIMKRKPRDPVYDKLVNQRLISLSYGQIGMIQAIAGFFTYFVIMGENGFLPSRLFNLRAEWDDKLNNAVPDSYGSEWTYFQRKELELTCHTAFFTTIVVVQWADLIICKTRKLSIVHQGMKNHMLNFGLLFETTLAAVLSYAPGLNTALRLRPLNATWWFCGVPFSLTIFIYDEIRRYLIRRNPGGWIELETYY 3220
V+R+G+KM +NA +VVGD+V IK GDRVPADLRI+ A KVDNSSLTGESEPQTR P+CTH+NPLET+NI FFSTN VEG G+V+ GD TVMGRIA LASGL G TPIA EIEHFI LITGVAVFLGV+F I+SL + Y WLEA+IFLIGIIVANVPEGLLATVTVCLTLTAK+MA KNCLVK+LEAVETLGSTS ICSDKTGTLTQNRMTVAHMWFDN I EADTTEDQSG + DK S TW AL I LCNRA F+G Q +P+LK++ AGDASE+A+LK +ELS GSV+ +R+RN KV+EIPFNSTNKYQ+SIHE EDPND RYLLVMKGAPERIL+RCSTI+ G E PLD E KEAF+ AYLELGGLGERVLGFCH+YLP ++FP+GF FD ++ NF +NLCF+GLMSMIDPPRAAVPDAV KCRSAGIKVIMVTGDHPITAKAIAKGVGIISEG+ETVEDI RLNIP VNPRDAKACV+HG LKD +++DEIL+ H EIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGI GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEI+PFL+FI+ +IPLPLGTITILCIDLGTDM+PAISLAYE AESDIMKR+PR+P DKLVN+RLIS++YGQIGMIQA+ GFF+YFVI+ ENGFLP L +R WDD+ N + DSYG +WTY QRK +E TCHTAFF +IVVVQWADLIICKTR+ S+ QGMKN +L FGL ET LAA LSY PG++ ALR+ PL +WWFC P+S IF+YDEIR+ ++RRNPGGW+E ETYY
Sbjct: 161 VIREGEKMQVNAEEVVVGDLVEIKGGDRVPADLRIISAHGCKVDNSSLTGESEPQTRSPDCTHDNPLETRNITFFSTNCVEGTARGVVVATGDRTVMGRIATLASGLEVGKTPIAIEIEHFIQLITGVAVFLGVSFFILSLILGYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGTSFDKSSHTWVALSHIAGLCNRAVFKGGQDNIPVLKRDVAGDASESALLKCIELSSGSVKLMRERNKKVAEIPFNSTNKYQLSIHETEDPNDNRYLLVMKGAPERILDRCSTILLQGKEQPLDEEMKEAFQNAYLELGGLGERVLGFCHYYLPEEQFPKGFAFDCDDV-NFTTDNLCFVGLMSMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVIHGTDLKDFTSEQIDEILQNHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIMANIPLPLGTITILCIDLGTDMVPAISLAYEAAESDIMKRQPRNPRTDKLVNERLISMAYGQIGMIQALGGFFSYFVILAENGFLPGNLVGIRLNWDDRTVNDLEDSYGQQWTYEQRKVVEFTCHTAFFVSIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMDVALRMYPLKPSWWFCAFPYSFLIFVYDEIRKLILRRNPGGWVEKETYY 1013 HSP 2 Score: 160.999 bits (406), Expect = 8.233e-40 Identity = 85/123 (69.11%), Postives = 102/123 (82.93%), Query Frame = 3
Query: 285 TSTKAAANLARDGFNALTPPKTTPEWLKFIQKLFGGFSLLLWIGALLCFFAYGIRTINEEDPAQDELYXXXXXXXXXXXXXXFSYYQEAKSSKIMESFKKLVPQEATVMRDGQKMALNATNLV 653
T +KA LARDG NALTPP TTPEW+KF ++LFGGFS+LLWIGA+LCF AYGI+ E+DP+ D LYLGIVL VV+ITG FSYYQEAKSSKIMESFK +VPQ+A V+R+G+KM +NA +V
Sbjct: 54 THSKAQEILARDGPNALTPPPTTPEWVKFCRQLFGGFSILLWIGAILCFLAYGIQAGTEDDPSGDNLYLGIVLAAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIREGEKMQVNAEEVV 176 The following BLAST results are available for this feature:
BLAST of TCONS_00068985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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