TCONS_00068984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068984
Unique NameTCONS_00068984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length946

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068984 ID=TCONS_00068984|Name=TCONS_00068984|organism=Clytia hemisphaerica|type=transcript|length=946bp
TGGGGCACCAGGAGGCAATGGCACAATGAAATATATTAGCTTTGAAACTC
TTCCAAAATAACCCCCAGTACAATTTCTTTCAATTGAATATGAATACAAT
AATTCTCCATCGTAGTTAAACTCCTGGATTTCATATGTTGTACTGCCCAC
ATTATTGATTGATTCTTGATAGAAAAACATCCTGTCGGTAGTATAATATC
TCCAAGGTTCAGAAAATAAATTCTCTTCAGGGCGACCAGGCATATCAACA
TACAGTTTAACTCTCCTACCATGCCATATATTGGTTGTATCAGTAtggaa
aatatcaacaaaacaatttggatCAAAATTATGCAGAGAAAATAAATCGC
GTGGCCTTTCATCAAATAACAAATAGGCTGAAAATTGGTCACCAACAATG
AAATCTACATCCCAATAGTGAAACTTATCTGCATCATATTGCAATGAAAG
ATCTGGCTTGGCTGAAGCTTCAACGGTCTTTGTTTGAAACTCTGTTTCTA
AGATATCGGAGAAGCTCAAATAGTAAAAATCTATGCTTGTTACTTTTGGT
TTCTTCTTTGATCTTATCAAGACTGCATGGATAAATGTAGCACCCAATGG
GTTAAGTTGTGACCAATTTGTGGAATATTCATCCATATGTGgcatttgaa
tttttaaaagttttttttcaagtgcacaACTTTCTTTATTGTATGATATG
ATATAGACTTGATTTTCCTGCTCGACGTAATCATGTACACCTACTAAATA
GTATTTTCCAGATGAATCAAACCCGCTATTTAAGATACAGTCATAGTCGT
TTCGAACCTTATCTGAAAGCAGGATTGGAGCACAATCTGTTCTCTCCTTA
TTTGAGGGAGCAAACATTGAATGCTTTTTGCAATCCATTTTTCTGTATCA
TTGGCATAGGAGCACCATATTATATCAATATTTGCATAGttattat
Run BLAST on NCBI

transcript from alignment at scaffold_491:86220..87660-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068984 ID=TCONS_00068984|Name=TCONS_00068984|organism=Clytia hemisphaerica|type=transcript|length=1441bp|location=Sequence derived from alignment at scaffold_491:86220..87660- (Clytia hemisphaerica)
TGGTAAGTTTCATGTTGACTTTATACCTAAATAGGTAAATAAGCATGACG
GTATGTTTTGTTTCAACAAATATTCATCACTAAATAATGTCAGCACTTTT
CTACCAGCCAAATATTTTAGAGACATCTTCCTACTTAAAATGTCTGTATT
ACAAAATTTGAAAAATAGTGTTCTGCATCCATTTGGTAAGTCGTTTTCAG
ACAAAGCCAAAACACCTAATTCTGATAGATTCCAATTAAGCATCGTTACT
GAGTCATATATCTCATGATCAGGTGGAAGATCATTAATTCTACAGCACAT
TATTTCTTTATTTGTATACAATTCACATGCTGTGAACACATGTTTAGTAT
CTTTAGTTTCAGTAAACAGTTGGGAAGCAAGGATTCCAAACTTATTAATA
AAAGGTGATTCAGATCCATCATTCAAATATTCAAAATCGGGAATAGCTTT
TCCATTGATTAACCTGAATACATGCTTTACTTCTGTATCTTTTTCAGGGG
CACCAGGAGGCAATGGCACAATGAAATATATTAGCTTTGAAACTCTTCCA
AAATAACCCCCAGTACAATTTCTTTCAATTGAATATGAATACAATAATTC
TCCATCGTAGTTAAACTCCTGGATTTCATATGTTGTACTGCCCACATTAT
TGATTGATTCTTGATAGAAAAACATCCTGTCGGTAGTATAATATCTCCAA
GGTTCAGAAAATAAATTCTCTTCAGGGCGACCAGGCATATCAACATACAG
TTTAACTCTCCTACCATGCCATATATTGGTTGTATCAGTATGGAAAATAT
CAACAAAACAATTTGGATCAAAATTATGCAGAGAAAATAAATCGCGTGGC
CTTTCATCAAATAACAAATAGGCTGAAAATTGGTCACCAACAATGAAATC
TACATCCCAATAGTGAAACTTATCTGCATCATATTGCAATGAAAGATCTG
GCTTGGCTGAAGCTTCAACGGTCTTTGTTTGAAACTCTGTTTCTAAGATA
TCGGAGAAGCTCAAATAGTAAAAATCTATGCTTGTTACTTTTGGTTTCTT
CTTTGATCTTATCAAGACTGCATGGATAAATGTAGCACCCAATGGGTTAA
GTTGTGACCAATTTGTGGAATATTCATCCATATGTGGCATTTGAATTTTT
AAAAGTTTTTTTTCAAGTGCACAACTTTCTTTATTGTATGATATGATATA
GACTTGATTTTCCTGCTCGACGTAATCATGTACACCTACTAAATAGTATT
TTCCAGATGAATCAAACCCGCTATTTAAGATACAGTCATAGTCGTTTCGA
ACCTTATCTGAAAGCAGGATTGGAGCACAATCTGTTCTCTCCTTATTTGA
GGGAGCAAACATTGAATGCTTTTTGCAATCCATTTTTCTGTATCATTGGC
ATAGGAGCACCATATTATATCAATATTTGCATAGTTATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042984XLOC_042984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068984-exon-scaffold_491-1575043694:87659..87660TCONS_00068984-exon-scaffold_491-1575043694:87659..87660Clytia hemisphaericaexon
TCONS_00068984-exon-scaffold_491-1575043694:86220..87163TCONS_00068984-exon-scaffold_491-1575043694:86220..87163Clytia hemisphaericaexon
TCONS_00068984-exon-scaffold_491-1510915933:87659..87660TCONS_00068984-exon-scaffold_491-1510915933:87659..87660Clytia hemisphaericaexon
TCONS_00068984-exon-scaffold_491-1510915933:86220..87163TCONS_00068984-exon-scaffold_491-1510915933:86220..87163Clytia hemisphaericaexon
TCONS_00068984-exon-scaffold_491-1491911889:87659..87660TCONS_00068984-exon-scaffold_491-1491911889:87659..87660Clytia hemisphaericaexon
TCONS_00068984-exon-scaffold_491-1491911889:86220..87163TCONS_00068984-exon-scaffold_491-1491911889:86220..87163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_491supercontigscaffold_491:86220..87660 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.76276	1.48303	0.572176	0.910712	5.83475	4.45088	2.13115	5.16501	1.71362	2.41278	1.20587	1.81205	2.13739	3.69349	3.05638	2.50546	3.40664	3.21555	0.94186	0.504364	1.37583	0.80623	0.75765	0.197274	2.46852	4.14162	0.974396	0.362197	0.597162	2.47093
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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