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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068975 ID=TCONS_00068975|Name=TCONS_00068975|organism=Clytia hemisphaerica|type=transcript|length=852bp GAAGACATTGTCTTGAATACCAAAATCACAATGCAAGGAGTTAATTTCGA ATTTCACAAGGACTATGATGTGCCAGCTAGGGCACAAATACGATGTTTTG GTGCTTCAGAATTGTCAGCTATTCCGTTTGATATGTTTAATGTTCCTGGC GAAAAACCTATCTTCCAAATTCAAGAGTTTTCTTATACGCCTTCCTATAT GGATGTGGAAGAATTAGTGAAAGGAAAACCGAAAGCAAAACCAGCAGCTA AAGAAAAGCCGAAAGCAGCTAAAGAAAAGCCAAAAGCAGCTAGATGGAAT TCTCTACCAAAATATGACTCTAGCAAACACAAGAGTTTCCTCAGAATTAC TTTTGTTCTGACAATTCCCGACAAATATAGTACAATACCCCATACATCTA TAGGGCTTGGTCCAATCAAGTTCCACATTGATCAAGTACCCACAGGATGG AAAATCACTGGCCTTACcacaatcaaaataaaagGAATGAAATACAATGT CAACGTGGCACATGCACTTGGAACACCCGGCTGGAAATTCATTttacaaa ttccaaaaatgtttgtaaaagattttcacaACTTTGTTACTGGTAATGAG GATGCAGATTTAGACACTGGGACTGCCCTTGATTCGTTTGGAATTCAAGA TTTGAGATTCGAGTATAATATCAATCGGGTAGTATCAAACGATGATAAAG GGGAAGAAATCAAAGATAGCAAAGGAAAACCGAAAAAGAAAACCGATTTT GGTGATGTCAAGTAAGTCATTCAATTCAGAGAGCAAAGACTTTGCTCTGA CGGATTGAACAGTTGAACTGGATTGAATTTagctttttctttgctttgcg TT Run BLAST on NCBI protein sequence of TCONS_00068975-protein >TCONS_00068975-protein ID=TCONS_00068975-protein|Name=TCONS_00068975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
EDIVLNTKITMQGVNFEFHKDYDVPARAQIRCFGASELSAIPFDMFNVPG EKPIFQIQEFSYTPSYMDVEELVKGKPKAKPAAKEKPKAAKEKPKAARWN SLPKYDSSKHKSFLRITFVLTIPDKYSTIPHTSIGLGPIKFHIDQVPTGW KITGLTTIKIKGMKYNVNVAHALGTPGWKFILQIPKMFVKDFHNFVTGNE DADLDTGTALDSFGIQDLRFEYNINRVVSNDDKGEEIKDSKGKPKKKTDF GDVK Run BLAST on NCBI transcript from alignment at scaffold_491:171946..179956+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068975 ID=TCONS_00068975|Name=TCONS_00068975|organism=Clytia hemisphaerica|type=transcript|length=8011bp|location=Sequence derived from alignment at scaffold_491:171946..179956+ (Clytia hemisphaerica) GAAGACATTGTCTTGAATACCAAAATCACAATGCAAGGAGTTAATTTCGA
ATTTCACAAGGACTATGATGTGCCAGCTAGGTAGGAAATAACAGTTAAGT
AGACTTAGAGTACTTGGTCgcaattttgaaagaaaaaaataaatataaga
tTGGCCCTATCTAGTGATAAAAACATTACAATTCATTTTTaacttccaaa
aacaactaaaacctggtaaaaaatgaatttttcttttcaatcagGGCACA
AATACGATGTTTTGGTGCTTCAGAATTGTCAGCTATTCCGTTTGATATGT
TTAATGTTNTTCAATCAGGGCACAAATACGATGTTTTGGTGCTTCAGAAT
TGTCAGCTATTCCGTTTGATATGTTTAATGTTCCTGGCGAAAAACCTATC
TTCCAAATTCAAGAGTTTTCTTATACGCCTTCCTATATGGATGTGGAAGA
ATTAGTGAAAGGAAAACCGAAAGCAAAACCAGCAGCTAAAGAAAAGCCGA
AAGCAGCTAAAGAAAAGCCAAAAGCAGCTAGATGGAATTCTCTACCAAAA
TATGACTCTAGCAAACACAAGAGTTTCCTCAGAATTACTTTTGTTCTGAC
AATTCCCGACAAATATAGTACAATACCCCATACATCTATAGGTGagcata
aaaaacatttttaacataaCATTGACATTTTTATCAACATGGTTTTGGTC
ATGACTTTTCATTCCCATTCGAAGttgaatgtaaaaaaattcactccgaA
ATCCCACTGGACTTTTTAGCTTGTCACAATAGAATTTcgatccccattgg
gatttcgataggaaTCTTTATCCCCACTTTGGGgaaaaattccaccgggg
cttAGCTtgccggggctgtgagacaggggtgtgaatGAGAATTCGCCTTG
TTATATTAAGTTTAAGATATCTGTTGGAGAACGTCTTAAAATTTGCCTTT
ACTGATATTTCGACTTTTAGCTAAAATAAGATACAAAAGGAGAACAatta
taaaaatgagaaaatatcgaaatattAAACTAAGGGTCCTGTAGCGCAAG
ACCATAATACAAGAGACTCTCAGAAAAACATGACCCAAATCACAGAAAGC
TACACTAAGCAAACACCACAGAATGAAAGAAGCACACGAGCAATAGATAA
TTTagaaaatactaagaaaataaCGTAAAAATAAACTTACTAAAAGCGAT
TCCAGCGTGCACTAAAGCAAACACATGCTCCAAATAAACAATTAGTAGTT
TATATAAACTTCAATGCCTCTGTAACTtcgagaagaaaaacaaacacttT
TTATCTCGACATAGAGATTtactttatttcaaaattctcaaCATAGAGGT
CTTCTTTCTTACACAGCTTTTTACACCGTGATTATCGAAAAGCAAATGAA
CAAAAAAGGAGTCGCTTCTGAGGCcacaaaatttctaatttcacAGGAAT
ACATTAACTGTTAAGAATATCTAAGACaaaaaatgcaattaaaattaaAC
TAGAAAAACAAAAGGAGTTGTAATAAAAACTTGATTTGCATTAGCTATAA
ATTAACGTATCGTTGATTGACGTCATATCATATGGGACTATTCCCATAAC
AATATCATTCTTCGTTGCTGTTAACTTAGCAGATGAGACACTTAAATTAG
GTGATTTGATAAAGCAACCATCAAGTAACAAGGCGCTGAGATAAGATAAG
TCTTGTCGCTCTGCCCTACTGCAANATTAGGTGATTTGATAAAGCAACCC
TCAAGTAACAAGGCGCTGAGATAAGATAAGTCTTGTCGCGTTATATAGAC
TTTGCGAACGTTAGATaagcgttgaaacaacgttgtgtgccaactgggaa
AGGTCTTTGATTGTAGAGAAATCTAATACTTCAAAAGCACTCTACTAAAC
GAATGTGCGTGTtagagttttagaaaaaaaaacctcAATCTGCTTTACAG
TAGTTGGAGTTTTGTGTTTATtcgattttttcaattctttctaATTCTGT
CTACTTCTAGGGCTTGGTCCAATCAAGTTCCACATTGATCAAGTACCCAC
AGGATGGAAAATCACTGGCCTTACcacaatcaaaataaaaggtttGCTCA
CATTAATAACCCTTAAATATGTTAgtactagccataattttcattaaagt
gccacagcagaagaacgatcaaataagttgttgaatttggaaagaaatgt
tactgatgaggcccccccagcgacaccgctaatcacgccatcacgcaaaa
aaattttctccatcacgcatcacgaaaatcgctaaaatttgtcatcacgc
aaaaaatagcgaaaaatagcccaaatcaNNNNNNNNNNNNNNNNNNNNNN
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gattgattgattgattgattgattgattgattgattgattgattgattga
ttgattgattgattgattgattgattgattgaaaaatatatattccatta
attaacaaaatacttgaagaattcatgcagcttgataatttaataaaatt
taaggaaaagctgggaaagcttctcaaaaatatatttcaaaagttatggt
atCATCAGCTCACTGGTTTTCACATctcttctttgctttttttctcctag
tttctttcttacaacaatatatgtcatgattattattcactaaatagacc
tttcctgataatgctgcagacatcttagattgtaggcaaaatatatagcg
gatactgcgtataaaatttatcaaaaggttctgcgccatcttaaattggg
tgaaatagaaactaatcctagttaaggcccgggctccattTGCGTACGCC
GTGATtacacttctcaagcaaaatcttctatgttgtttgtcaaaagaaaa
ataaagaaatgccattgtggtccctTCAGATGTatagtcgagaaaagttg
aaatgcgcctaaattttttttcaagtgcatagtactttttaatgatgcaa
tcttttctccaaactgaaaggattgaagccattaagatgatcacagcgca
gacaatgaagacaCGTGTGCCTTCagaggaagctagactttttgaggtTA
TTGCTATATAcattcactttatggtgtttctgtatgactgtctgtgtacc
tagtctaaccaccgttaaaagccttcgggaaggtccctcctaacttggaa
agacAGAATttgagctatttcaccaaaccactggagcgtaagttatttag
gctatcacaactgcatgaaaaagttgaacgtgcgcatgtaaagttagttt
ttaggcttttaaaatagatttaccacacttaacaaacagtgaaaacattc
taagtgaggtaaatctatttttaagactaaaagaaaaagtttgttttcat
tgattgacattcattcgaccacttttggattcaactttacatatgcgtac
attcaacttttttgtactttgccggtatcttgttttaccaagttaagaag
gactttctcgagttacgaccatatgatgatctttaaagctcaagaagctc
tataaacaataaaggtagttattaaaaaaataacagACAAACATAAATTA
CAGtctgaataaaaatatcaaatgtacatttgaaaaattaagccaatttc
tttaaagattctggaaaaagaattaaaatcattgctggaaatgaacttct
gactaaattacagtagttagtattcagtttcaaaaacaagaaacaaaatt
tgacatacaaaacacttttttcagtcaatgaatcagctcatcatcataac
cagtctgccattttttttattttgacttgcacaagtaatattgtaattcg
tgttatatatcatacactgttttaatttgcatttataacactcgcatCTG
CTTTTCAAAGCtgaatcaaaactaataaattgtaatatgtaataatggta
atagcatataacgaaATATGACCCGtggggggaggggtactagggcaaga
tgggttacgggaNACCCCCCTCCCCCGgggaaatatgaaaatattacaaa
aaccgaacatttaaggaggagactaactacggggatgcttgtgcaacaaa
acaaacaaacacgcgcaacaaaatttcgagattcaagtccaatatctatg
cgtgaggCTATGAGCGCCTCCTCGtagctacgctcctgcgggggcaataa
tggtttgtttatatcatactaaacgctactgtactgtacattttactgta
atagtcaaacgacaattttttgaaaggataaaaatttctaatttccgTTG
CTCAGAGCGGTTAATAACTGCTTGTGGTTTagatagggaatttcccagca
AAAAAGGGATTTCCCTTAATTCAactccctgaggtaataaaaaaagacat
tgagctttgaaaatgggtaatcagatcaaaacaaatccgGACAATTGTTT
TTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNTCAGTCACCAcctaccatcagatttatcctagtgactgaat
caaactagcttagatttctaggctactggaaaatgttaaaatttgcaaaa
gaccctcttggaaaaattcttttcatatcctaaaagtgagggtggacgag
cTAGTATTTTgtcccctggaaattttgaaatataatgaaaaaatgctttt
ttattaTCCCTTTTTTATAATTCTTCTCTGATTGACCtttggaaatgttc
gtccaccccttgTCTGGATACAAAATGGACTGGCCCAACGACCGTCAATT
TATGAACTTTATGAACTGATGGGTTTTGTTTACCTAACACAGTGATTAGA
AAATATAACTTCAAAGAATAACTTCTGACGTTTTAATTTGCAGGAATGAA
ATACAATGTCAACGTGGCACATGCACTTGGAACACCCGGCTGGAAATTCA
TTttacaaattccaaaaatgtttgtaaaagattttcacaACTTTGTTACT
GGTAATGAGGATGCAGATTTAGACACTGGGACTGCCCTTGATTCGTTTGG
AATTCAAGATTTGAGATTCGAGTATAATATCAATCGGGTAGTATCAAACG
ATGATAAAGGGGAAGAAATCAAAGATAGCAAAGGAAAACCGAAAAAGAAA
ACCGATTTTGGTGATGTCAAGTAAGTCATTCAATTCAGAGAGCAAAGACT
TTGCTCTGACGGATTGAACAGTTGAACTGGATTGAATTTagctttttctt
tgctttgcgTT Coding sequence (CDS) from alignment at scaffold_491:171946..179956+ >TCONS_00068975 ID=TCONS_00068975|Name=TCONS_00068975|organism=Clytia hemisphaerica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_491:171946..179956+ (Clytia hemisphaerica) GAAGACATTGTCTTGAATACCAAAATCACAATGCAAGGAGTTAATTTCGA ATTTCACAAGGACTATGATGTGCCAGCTAGGGCACAAATACGATGTTTTG GTGCTTCAGAATTGTCAGCTATTCCGTTTGATATGTTTAATGTTCCTGGC GAAAAACCTATCTTCCAAATTCAAGAGTTTTCTTATACGCCTTCCTATAT GGATGTGGAAGAATTAGTGAAAGGAAAACCGAAAGCAAAACCAGCAGCTA AAGAAAAGCCGAAAGCAGCTAAAGAAAAGCCAAAAGCAGCTAGATGGAAT TCTCTACCAAAATATGACTCTAGCAAACACAAGAGTTTCCTCAGAATTAC TTTTGTTCTGACAATTCCCGACAAATATAGTACAATACCCCATACATCTA TAGGGCTTGGTCCAATCAAGTTCCACATTGATCAAGTACCCACAGGATGG AAAATCACTGGCCTTACcacaatcaaaataaaagGAATGAAATACAATGT CAACGTGGCACATGCACTTGGAACACCCGGCTGGAAATTCATTttacaaa ttccaaaaatgtttgtaaaagattttcacaACTTTGTTACTGGTAATGAG GATGCAGATTTAGACACTGGGACTGCCCTTGATTCGTTTGGAATTCAAGA TTTGAGATTCGAGTATAATATCAATCGGGTAGTATCAAACGATGATAAAG GGGAAGAAATCAAAGATAGCAAAGGAAAACCGAAAAAGAAAACCGATTTT GGTGATGTCAAGTAAGAAGACATTGTCTTGAATACCAAAATCACAATGCA AGGAGTTAATTTCGAATTTCACAAGGACTATGATGTGCCAGCTAGGGCAC AAATACGATGTTTTGGTGCTTCAGAATTGTCAGCTATTCCGTTTGATATG TTTAATGTTCCTGGCGAAAAACCTATCTTCCAAATTCAAGAGTTTTCTTA TACGCCTTCCTATATGGATGTGGAAGAATTAGTGAAAGGAAAACCGAAAG CAAAACCAGCAGCTAAAGAAAAGCCGAAAGCAGCTAAAGAAAAGCCAAAA GCAGCTAGATGGAATTCTCTACCAAAATATGACTCTAGCAAACACAAGAG TTTCCTCAGAATTACTTTTGTTCTGACAATTCCCGACAAATATAGTACAA TACCCCATACATCTATAGGGCTTGGTCCAATCAAGTTCCACATTGATCAA GTACCCACAGGATGGAAAATCACTGGCCTTACcacaatcaaaataaaagG AATGAAATACAATGTCAACGTGGCACATGCACTTGGAACACCCGGCTGGA AATTCATTttacaaattccaaaaatgtttgtaaaagattttcacaACTTT GTTACTGGTAATGAGGATGCAGATTTAGACACTGGGACTGCCCTTGATTC GTTTGGAATTCAAGATTTGAGATTCGAGTATAATATCAATCGGGTAGTAT CAAACGATGATAAAGGGGAAGAAATCAAAGATAGCAAAGGAAAACCGAAA AAGAAAACCGATTTTGGTGATGTCAAGTAAGAAGACATTGTCTTGAATAC CAAAATCACAATGCAAGGAGTTAATTTCGAATTTCACAAGGACTATGATG TGCCAGCTAGGGCACAAATACGATGTTTTGGTGCTTCAGAATTGTCAGCT ATTCCGTTTGATATGTTTAATGTTCCTGGCGAAAAACCTATCTTCCAAAT TCAAGAGTTTTCTTATACGCCTTCCTATATGGATGTGGAAGAATTAGTGA AAGGAAAACCGAAAGCAAAACCAGCAGCTAAAGAAAAGCCGAAAGCAGCT AAAGAAAAGCCAAAAGCAGCTAGATGGAATTCTCTACCAAAATATGACTC TAGCAAACACAAGAGTTTCCTCAGAATTACTTTTGTTCTGACAATTCCCG ACAAATATAGTACAATACCCCATACATCTATAGGGCTTGGTCCAATCAAG TTCCACATTGATCAAGTACCCACAGGATGGAAAATCACTGGCCTTACcac aatcaaaataaaagGAATGAAATACAATGTCAACGTGGCACATGCACTTG GAACACCCGGCTGGAAATTCATTttacaaattccaaaaatgtttgtaaaa gattttcacaACTTTGTTACTGGTAATGAGGATGCAGATTTAGACACTGG GACTGCCCTTGATTCGTTTGGAATTCAAGATTTGAGATTCGAGTATAATA TCAATCGGGTAGTATCAAACGATGATAAAGGGGAAGAAATCAAAGATAGC AAAGGAAAACCGAAAAAGAAAACCGATTTTGGTGATGTCAAGTAAGAAGA CATTGTCTTGAATACCAAAATCACAATGCAAGGAGTTAATTTCGAATTTC ACAAGGACTATGATGTGCCAGCTAGGGCACAAATACGATGTTTTGGTGCT TCAGAATTGTCAGCTATTCCGTTTGATATGTTTAATGTTCCTGGCGAAAA ACCTATCTTCCAAATTCAAGAGTTTTCTTATACGCCTTCCTATATGGATG TGGAAGAATTAGTGAAAGGAAAACCGAAAGCAAAACCAGCAGCTAAAGAA AAGCCGAAAGCAGCTAAAGAAAAGCCAAAAGCAGCTAGATGGAATTCTCT ACCAAAATATGACTCTAGCAAACACAAGAGTTTCCTCAGAATTACTTTTG TTCTGACAATTCCCGACAAATATAGTACAATACCCCATACATCTATAGGG CTTGGTCCAATCAAGTTCCACATTGATCAAGTACCCACAGGATGGAAAAT CACTGGCCTTACcacaatcaaaataaaagGAATGAAATACAATGTCAACG TGGCACATGCACTTGGAACACCCGGCTGGAAATTCATTttacaaattcca aaaatgtttgtaaaagattttcacaACTTTGTTACTGGTAATGAGGATGC AGATTTAGACACTGGGACTGCCCTTGATTCGTTTGGAATTCAAGATTTGA GATTCGAGTATAATATCAATCGGGTAGTATCAAACGATGATAAAGGGGAA GAAATCAAAGATAGCAAAGGAAAACCGAAAAAGAAAACCGATTTTGGTGA TGTCAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00068975-exon-scaffold_491-1491911889:171946..172025 | TCONS_00068975-exon-scaffold_491-1491911889:171946..172025 | Clytia hemisphaerica | exon |
TCONS_00068975-exon-scaffold_491-1510915933:171946..172025 | TCONS_00068975-exon-scaffold_491-1510915933:171946..172025 | Clytia hemisphaerica | exon |
TCONS_00068975-exon-scaffold_491-1575043694:171946..172025 | TCONS_00068975-exon-scaffold_491-1575043694:171946..172025 | Clytia hemisphaerica | exon |
TCONS_00068975-exon-scaffold_491-1491911889:172264..172586 | TCONS_00068975-exon-scaffold_491-1491911889:172264..172586 | Clytia hemisphaerica | exon |
TCONS_00068975-exon-scaffold_491-1510915933:172264..172586 | TCONS_00068975-exon-scaffold_491-1510915933:172264..172586 | Clytia hemisphaerica | exon |
TCONS_00068975-exon-scaffold_491-1575043694:172264..172586 | TCONS_00068975-exon-scaffold_491-1575043694:172264..172586 | Clytia hemisphaerica | exon |
TCONS_00068975-exon-scaffold_491-1491911889:173956..174036 | TCONS_00068975-exon-scaffold_491-1491911889:173956..174036 | Clytia hemisphaerica | exon |
TCONS_00068975-exon-scaffold_491-1510915933:173956..174036 | TCONS_00068975-exon-scaffold_491-1510915933:173956..174036 | Clytia hemisphaerica | exon |
TCONS_00068975-exon-scaffold_491-1575043694:173956..174036 | TCONS_00068975-exon-scaffold_491-1575043694:173956..174036 | Clytia hemisphaerica | exon |
TCONS_00068975-exon-scaffold_491-1491911889:179589..179956 | TCONS_00068975-exon-scaffold_491-1491911889:179589..179956 | Clytia hemisphaerica | exon |
TCONS_00068975-exon-scaffold_491-1510915933:179589..179956 | TCONS_00068975-exon-scaffold_491-1510915933:179589..179956 | Clytia hemisphaerica | exon |
TCONS_00068975-exon-scaffold_491-1575043694:179589..179956 | TCONS_00068975-exon-scaffold_491-1575043694:179589..179956 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_491 | supercontig | scaffold_491:171946..179956 + |
Blast
The following BLAST results are available for this feature:
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