TCONS_00068966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068966
Unique NameTCONS_00068966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068966 ID=TCONS_00068966|Name=TCONS_00068966|organism=Clytia hemisphaerica|type=transcript|length=539bp
gaacAAAATTTACCATAAATAgatcaaaatggtagacattTCGGAGATTG
GAATAACATATCATCTGAGCACAGAAAATATCATCTCTGGTCAACTGGAT
GACTTTGCAAATCTAACAAAagAGTTTTTTGACAACCTTACAAAAGTTTA
CAGCCAACGTGGCAGACCACCTACCAACACTGAAGCACTCAATAAGATTG
GAGAAGATTTGGCTTACAAAGGCAAtgatttgaagaaaagtttACAGACA
GCAATCGAACAAATCAACGTTTGCAAAGATATAGACAAGGTGAAAGAAGA
AAtaacaaaagttgaaaaagagaTATTACAAACACATTCACAATTGAAAG
AGGCTGAAAAAATACTTgcAGTCGCtgttttccaagcaaaaaagaaGTTA
GAAGCAGGCAAACAAGCCAAGTCTGCTTCAGTATCATGCGAAGATTTGAT
CAAGTTTGCATTTCGTATAAGTAGTGGAAATTCTGTGGAAGCTCCTCAAG
ATTGGAAACCTGGGGATCCACGAAGACCATATCCATTAT
Run BLAST on NCBI

transcript from alignment at scaffold_491:89124..94256+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068966 ID=TCONS_00068966|Name=TCONS_00068966|organism=Clytia hemisphaerica|type=transcript|length=5133bp|location=Sequence derived from alignment at scaffold_491:89124..94256+ (Clytia hemisphaerica)
gaacAAAATTTACCATAAATAgatcaaaatggtagacattTCGGAGATTG
GAATAACATATCATCTGAGCACAGAAAATATCATCTCTGGTCAACTGGAT
GACTTTGCAAATCTAACAAAGTAAGTATTTTATTAGTTGTAACATTGATG
TCGTATGtaacattcaaaacaaaaattttaaaagcagATTGACAGTATTT
GGAAACATGTCGGTTTTTTAATATTTGGAAAAGTCTTGACCAGTAAAGAT
AAAGGGAAACAACCTTTTTTGATTACATCTTTTCTATATTCGCACTCATT
CCTTCAGAGTCCGAGAGAgttatattttcatttatttagagAGTTTTTTG
ACAACCTTACAAAAGTTTACAGCCAACGTGGCAGACCACCTACCAACACT
GAAGCACTCAATAAGGTTCGAAATTTGTATTGCATAATTATGATATTAAG
TTTATCAGGTaggtttgacgtcaaaatcctTTGTCTTGGAGAAAATTAAT
ACAACAAATTTAGAAATATGTCAATCTCCTTTACACTTTAAAGGTGAATT
ATAACACAGTAACCCttaggggccatccatatagtacgcaTGCAATGAAT
GGGGGAGGGAGGGGATTAGCAAAAGTGTaggtctattgtttaaatgGCAT
CATTTATATTGTTCTCTGCATaccaggggggagggggtatccaatatttg
aaaaaattatgcgCACGTTCTATATTTATATACATTAAAACTAAATATGT
CCTATCAAAAAAGATTCATCATAAATGCATATTTTGTCAcagtgaaaaat
ttttttctttcaaaccttTCAGATTGGAGAAGATTTGGCTTACAAAGGCA
AtgatttgaagaaaagtttACAGACAGGTTTATTATATGTTTCCTTATCC
AGGATGGTGCACTACTGCATTTACTGTTACtgaatttattatttaaaaag
ttACGTAACTGTTTTGATTTCTTGCACCTAATTCTTAgatagaaattttt
gtcaattttaaagATTCTTTGCGGTGTTGTATATCATAAATGACAATAGT
GATGACAATGGATGACAGTACATGGGATCCTCCCTCCCCCCAGGAAGATA
GGGGGGTCAGCTTTTGTCCTGGAGAGGGAAGTGAATATTTTCACCTTGAT
GGGGGACTAATACAAATGGGGGATTTCAGGATATTTTAATGGAAGTGGGA
GTAGAAATTGCAGAAGTTAGATATAATGATAATTCAAATAGATGATTAAA
TGTGTCTATTTCCAGCATTTGTGTGTTCATTGCAGGAAGTCTTTATTTTT
ATCAAGTTATTATGcaaaactagccggtacccagcgtcgcacgccggttt
agctgtttgctgaacgcatttaaagtcctttgagatgttgggaaggtggc
ttaaacacgataaAATCAAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNaaataacttcgtcataacttcaataatttttcaaat
tcaacaatgacttagatttacagcaaaataattatcgacatacatgttta
aaggtccgtTTTTACGAGAAAGAAttttagtttttaccgccttttgaatg
tatttttaatgttgctgttgttctaacaaacttgttatgtgattcttgtg
ttttattttatatttgctcttttctttaacagattctgtttaaaaaattt
cttttgttttgaaaaagaattcgaatgtctcaaatcaaataaggtcgtta
attacattcgaaaacataaaacaaaagaaaagaaagaaaaaagaaagaaa
aagtctaatctatcaatcaaaacggcgcgaatatcgttaaacaaatttgt
ggagcaagaacaaaataaaagtcatcttttaaaagaacaaaacattgctt
gcgaaaacgaaagtgacacacAAACAAACAAAATGACATACAGACTACGG
CTATTAATATATAGATATAGCAAATCGTTGGgtcacaaaaatattcttca
aatgGGGGAGAATCCCGGAAAAAGGGTAGGTGGGGGAGAAGACCAAATGG
GGGTTTTAGTCCCTAAGATGGGGGAACCTGAAAACCTTGAGGACACCATG
CAGTTATTTTTACTAAATcgttttgagctaatttttgaTAGCAAACAACA
ATGACGTGAAACATTTGAAGATTCGAAACTGGTCGATTCTGTGGAACTTT
CCCTTCTCTTTTCATTTGTAATTCATTTGGTAACAAACAATGGGATTatc
tttgacttttttgacttttttacagCAATCGAACAAATCAACGTTTGCAA
AGATATAGACAAGGTGAAAGAAGAAAtaacaaaagttgaaaaagagaTAT
TACAAACACATTCACAATTGAAAGAGGCTGAAAAAATACTTGTAAGCACT
TTTGTTACAATTTCCATTGATCTGGTACCACTATAATAGATCTAAGGTTG
TTGTATActcacattttattttcaggcAGTCGCtgttttccaagcaaaaa
agaaGTTAGAAGCAGGCAAACAAGCCAAGTCTGGTAAGATCAGTTTTATT
TCTCCTACTCTATTTTGCTCAAGAAGTCAATAATTGGACTAAGCTAAGTA
TTAAatggacataacagtacttgcgaaatttgtaaacaaactgtatgcag
cggatacaaaatcaaaacaaatgtcacatttcaactgtttcaaaataaaa
aatcaaaccaaatatggctaattgttttacaagtttgttttggacacgtg
attttaattgttctttttaatgacacgtggttcgcgcaatgtttacattt
tactactgtaatgtccctttaagtatTTCTGTTAATTTTTATACTCAATT
AGCAGAaaaggacttgatttaaagaaaaaagtgaagacctttgttttgtt
ttgtttttcttaacttgATATGGCAAATGTATCGAATCCATACTTGAATT
TCATATGTCTAATTATGGCTAATTATATTCATAATGGCGTTTACAATATT
AAAATTAATCTTTTTCTTCCAGCTTCAGTATCATGCGAAGATTTGATCAA
GTTTGCATTTCGTATAAGTAGTGGAAATTCTGTGGAAGCTCCTCAAGATT
GGAAACCTGGTAacgttttgttttcattcataTGTGTTTTATATGAAAAT
GAGGAAAaagttgtctgtacacagacccgatatctacagctaatttcaaa
GTTCATAGCCGTAGAGGGacctgttgtcattgtcttttctcgtttgagat
ttttcaaaccgaccgctgttttggagtgttggtgagagaggggaggtGAT
AAGAGAAaggttgctatttataaatcatacttcatcgcagagttctccgt
acgggaatttttttatcagacagacaatgcgcacagagtgagatacactc
tggtacagagaaGGAAAAAGTGGACATACAGAAAACATATAGAAAATTAT
CTTTGTCGCTAACAGAATGGATATTTTTTTCTGGGAGCACTTGTATTGCA
TTATTTTGTGGAGGTCACTGTTAAAATAAACAAACGATTGTAGGTATTTT
CAAATTGTAAGAGTAAGATAGGTGTTGAAAATACCTACAAAAACAGTTGT
TATGATCAGTTCGGCTTACTACTTATTATATGTATTACTGAATAGAAACA
CGCAGGTTATTTCTGTTGCAAAATATCTTCTAAACAAATAGATGAATTTA
TTTGTCTAAACAAATAGATGAATTTATTTGTTCGCCAGAAAGCTTAGATT
TCACCGAATCATTTTAATTGTGATCACATCGTAATTTTTACTTGTATTAC
CGTAACTTCGTGTAATGccgacataccttgtctaatttCGCAACTATCTG
ATCTTTGAAATGTTTACAGATAAAACCCTCTGAATAACCTGTTTCGTAAc
tactttgcagaccagatagttgctatggcGGAATTGGACAAGCTATGTCG
ACATTACACGAAGCTACAGTACTAAATAAGAAACGTGTATTTTTATGCCA
CAGGGGATCCACGAAGACCATATCCATTATAAGAAACGTGTATTTTTATG
CCACAGGGGATCCACGAAGACCATATCCATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042977XLOC_042977Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068966-exon-scaffold_491-1491911889:89124..89243TCONS_00068966-exon-scaffold_491-1491911889:89124..89243Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1510915933:89124..89243TCONS_00068966-exon-scaffold_491-1510915933:89124..89243Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1575043694:89124..89243TCONS_00068966-exon-scaffold_491-1575043694:89124..89243Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1491911889:89463..89538TCONS_00068966-exon-scaffold_491-1491911889:89463..89538Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1510915933:89463..89538TCONS_00068966-exon-scaffold_491-1510915933:89463..89538Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1575043694:89463..89538TCONS_00068966-exon-scaffold_491-1575043694:89463..89538Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1491911889:89946..90000TCONS_00068966-exon-scaffold_491-1491911889:89946..90000Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1510915933:89946..90000TCONS_00068966-exon-scaffold_491-1510915933:89946..90000Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1575043694:89946..90000TCONS_00068966-exon-scaffold_491-1575043694:89946..90000Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1491911889:92449..92564TCONS_00068966-exon-scaffold_491-1491911889:92449..92564Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1510915933:92449..92564TCONS_00068966-exon-scaffold_491-1510915933:92449..92564Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1575043694:92449..92564TCONS_00068966-exon-scaffold_491-1575043694:92449..92564Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1491911889:92649..92706TCONS_00068966-exon-scaffold_491-1491911889:92649..92706Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1510915933:92649..92706TCONS_00068966-exon-scaffold_491-1510915933:92649..92706Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1575043694:92649..92706TCONS_00068966-exon-scaffold_491-1575043694:92649..92706Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1491911889:93196..93282TCONS_00068966-exon-scaffold_491-1491911889:93196..93282Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1510915933:93196..93282TCONS_00068966-exon-scaffold_491-1510915933:93196..93282Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1575043694:93196..93282TCONS_00068966-exon-scaffold_491-1575043694:93196..93282Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1491911889:94230..94256TCONS_00068966-exon-scaffold_491-1491911889:94230..94256Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1510915933:94230..94256TCONS_00068966-exon-scaffold_491-1510915933:94230..94256Clytia hemisphaericaexon
TCONS_00068966-exon-scaffold_491-1575043694:94230..94256TCONS_00068966-exon-scaffold_491-1575043694:94230..94256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_491supercontigscaffold_491:89124..94256 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.45823	8.39191	15.1538	11.0526	23.1092	17.9043	10.8512	12.7834	9.28498	7.69373	7.78347	7.15469	6.22171	9.09792	7.63663	6.12706	6.8281	8.51194	4.14161	4.79532	4.20186	4.54387	11.5243	10.8613	8.33062	7.82124	2.65787	1.87469	8.01484	9.20818
Blast
[Close]
BLAST of TCONS_00068966 vs. Swiss-Prot (Human)
Match: MED4 (Mediator of RNA polymerase II transcription subunit 4 OS=Homo sapiens GN=MED4 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.084e-23
Identity = 56/156 (35.90%), Postives = 97/156 (62.18%), Query Frame = 2 
Query:   68 STENIISGQLDDFANLTKEFFDNLTKVYSQRGRPPTNTEALNKIGEDLAYKGNDLKKSLQTAIEQINVCKDIDXXXXXXXXXXXXXLQTHSQLKEAEKILAVAVFQAKKKLEAGKQAKSASVSCEDLIKFAFRISSGNSVEAPQDWKPGDPRRPYP 535
            ST   +   L+D   L++E  + L    +Q+          N++ E L ++  + ++ ++ A+ Q  +  ++  +++E+ K + +I Q   QLKEAE+ILA AV+QAK+KL++ ++A+  ++S E++IK+A RIS+ N+V AP  W PGDPRRPYP
Sbjct:   25 STRERLLSALEDLEVLSRELIEMLAISRNQKL---LQAGEENQVLELLIHRDGEFQELMKLALNQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYP 177
The following BLAST results are available for this feature:
BLAST of TCONS_00068966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED41.084e-2335.90Mediator of RNA polymerase II transcription subuni... [more]
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