TCONS_00068950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068950
Unique NameTCONS_00068950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068950 ID=TCONS_00068950|Name=TCONS_00068950|organism=Clytia hemisphaerica|type=transcript|length=371bp
CCTCTATTCACCTTGTGTTCATCCAGGTTTAAGCGATGAACAAATATACC
TCCACTTTCTCAATGATTTTGCCTGAATGTCATTGGTCAACCGATCGTGA
ATGGATTATCCCCGATGGTGGTGGCCATTTACTTGACCACGAGATTGTTT
GGTTACAGGAGCCTGTATTCAAAATACCAGACTTCAAGGATAGACCTAga
caaaatcttcaaagaagtGACAAATGAAAACTTCAAAAGTGCAGTTGAGA
CGAATCAGTTCGAGGAATGGGCAACCTTTTACAGGTCACTTCGATCAAAG
AAGAGCAAATGGGAGGAACTTGGTCGATTTGAGCTGAAGCAGATTGTAAA
TTGGCCTTTGACACTATTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_490:47115..47485

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068950 ID=TCONS_00068950|Name=TCONS_00068950|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at scaffold_490:47115..47485 (Clytia hemisphaerica)
ATCAATAGTGTCAAAGGCCAATTTACAATCTGCTTCAGCTCAAATCGACC
AAGTTCCTCCCATTTGCTCTTCTTTGATCGAAGTGACCTGTAAAAGGTTG
CCCATTCCTCGAACTGATTCGTCTCAACTGCACTTTTGAAGTTTTCATTT
GTCacttctttgaagattttgtcTAGGTCTATCCTTGAAGTCTGGTATTT
TGAATACAGGCTCCTGTAACCAAACAATCTCGTGGTCAAGTAAATGGCCA
CCACCATCGGGGATAATCCATTCACGATCGGTTGACCAATGACATTCAGG
CAAAATCATTGAGAAAGTGGAGGTATATTTGTTCATCGCTTAAACCTGGA
TGAACACAAGGTGAATAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042970XLOC_042970Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068950-exon-scaffold_490-1491911889:47115..47485TCONS_00068950-exon-scaffold_490-1491911889:47115..47485Clytia hemisphaericaexon
TCONS_00068950-exon-scaffold_490-1510915933:47115..47485TCONS_00068950-exon-scaffold_490-1510915933:47115..47485Clytia hemisphaericaexon
TCONS_00068950-exon-scaffold_490-1575043694:47115..47485TCONS_00068950-exon-scaffold_490-1575043694:47115..47485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_490supercontigscaffold_490:47115..47485 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.459391	0.297744	0	1.5698	0	0.22859	0.221875	0.291703	0.291298	0.302516	0	0.337864	0	0.337012	0.357894	0.0808125	0.0296445	0	0.423215	0.228286	0	0	0	0	0.243071	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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