TCONS_00068949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068949
Unique NameTCONS_00068949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068949 ID=TCONS_00068949|Name=TCONS_00068949|organism=Clytia hemisphaerica|type=transcript|length=430bp
tttttttcccattggcaattttcaaattgaatttattGCTGATTTCTTCT
TTGTTATATATAGGATGGTACTGTGTATTTTTGTTATGAGTTCATAGTAA
GATGTTCTCAATTCTAGTCATAAGGAGTGTCAAACTGGAGTTCTGGTTCA
CAGGTAATTTGAAGGTTTCATCACTCAGAATATGTATTATTGCAGTAAGT
AGTTATTTTACAGTAACGCTCTATTCTCATTTTAAACGTCCTCAGCCATC
AACGCACAAGACAAGTATTCCACGCTATATTCCAAGGAATATTCAATCCC
TGTCACCAAAAAACAATCCAAACGAGAAAAACTTGCAGCTTTCTACACCT
TCACTGTACAAACGCTCTTCAGCACCATCGGCTATTCCTGTTTTACGAAA
ACCTCAAACTCCACGTAACTTAAGTGACAG
Run BLAST on NCBI

protein sequence of TCONS_00068949-protein

>TCONS_00068949-protein ID=TCONS_00068949-protein|Name=TCONS_00068949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MFSILVIRSVKLEFWFTGNLKVSSLRICIIAVSSYFTVTLYSHFKRPQPS
THKTSIPRYIPRNIQSLSPKNNPNEKNLQLSTPSLYKRSSAPSAIPVLRK
PQTPRNLSD
Run BLAST on NCBI

transcript from alignment at scaffold_490:18735..19300-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068949 ID=TCONS_00068949|Name=TCONS_00068949|organism=Clytia hemisphaerica|type=transcript|length=566bp|location=Sequence derived from alignment at scaffold_490:18735..19300- (Clytia hemisphaerica)
TTTTTTTCCCATTGGCAATTTTCAAATTGAATTTATTGCTGATTTCTTCT
TTGTTATATATAGGATGGTACTGTGTATTTTTGTTATGAGTTCATAGTAA
GATGTTCTCAATTCTAGTCATAAGGAGTGTCAAACTGGAGTTCTGGTTCA
CAGGTAATTTGAAGGTTTCATCACTCAGAATATGTATTATTGCAGTAAGT
AGTTATTTTACAGTAACGCTCTATTCTCATTTTAAACGTCCTCAGCCATC
AACGCACAAGACAAGTATTCCACGCTATATTCCAAGGAATATTCAATCCC
TGTCACCAAAAAACAATCCAAACGAGAAAAACTTGCAGGTATATAAATTT
CATTTTAGTAGTATATACAGTAGATTAAAAGATATTTCAGAATTACGTTT
AAGATTATTCTTTCTAGAGTGCTATTTTTGTTTAAAGTTTGTTCCTTAAC
CTTTTACCCCTGTTACTTTTTTAGCTTTCTACACCTTCACTGTACAAACG
CTCTTCAGCACCATCGGCTATTCCTGTTTTACGAAAACCTCAAACTCCAC
GTAACTTAAGTGACAG

Coding sequence (CDS) from alignment at scaffold_490:18735..19300-

>TCONS_00068949 ID=TCONS_00068949|Name=TCONS_00068949|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_490:18735..19300- (Clytia hemisphaerica)
CTTTCTACACCTTCACTGTACAAACGCTCTTCAGCACCATCGGCTATTCC
TGTTTTACGAAAACCTCAAACTCCACGTAACTTAAGTGACATGTTCTCAA
TTCTAGTCATAAGGAGTGTCAAACTGGAGTTCTGGTTCACAGGTAATTTG
AAGGTTTCATCACTCAGAATATGTATTATTGCAGTAAGTAGTTATTTTAC
AGTAACGCTCTATTCTCATTTTAAACGTCCTCAGCCATCAACGCACAAGA
CAAGTATTCCACGCTATATTCCAAGGAATATTCAATCCCTGTCACCAAAA
AACAATCCAAACGAGAAAAACTTGCAGCTTTCTACACCTTCACTGTACAA
ACGCTCTTCAGCACCATCGGCTATTCCTGTTTTACGAAAACCTCAAACTC
CACGTAACTTAAGTGACATGTTCTCAATTCTAGTCATAAGGAGTGTCAAA
CTGGAGTTCTGGTTCACAGGTAATTTGAAGGTTTCATCACTCAGAATATG
TATTATTGCAGTAAGTAGTTATTTTACAGTAACGCTCTATTCTCATTTTA
AACGTCCTCAGCCATCAACGCACAAGACAAGTATTCCACGCTATATTCCA
AGGAATATTCAATCCCTGTCACCAAAAAACAATCCAAACGAGAAAAACTT
GCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042969XLOC_042969Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068949-proteinTCONS_00068949-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068949-exon-scaffold_490-1575043694:18963..19300TCONS_00068949-exon-scaffold_490-1575043694:18963..19300Clytia hemisphaericaexon
TCONS_00068949-exon-scaffold_490-1575043694:18735..18826TCONS_00068949-exon-scaffold_490-1575043694:18735..18826Clytia hemisphaericaexon
TCONS_00068949-exon-scaffold_490-1510915933:18963..19300TCONS_00068949-exon-scaffold_490-1510915933:18963..19300Clytia hemisphaericaexon
TCONS_00068949-exon-scaffold_490-1510915933:18735..18826TCONS_00068949-exon-scaffold_490-1510915933:18735..18826Clytia hemisphaericaexon
TCONS_00068949-exon-scaffold_490-1491911889:18963..19300TCONS_00068949-exon-scaffold_490-1491911889:18963..19300Clytia hemisphaericaexon
TCONS_00068949-exon-scaffold_490-1491911889:18735..18826TCONS_00068949-exon-scaffold_490-1491911889:18735..18826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_490supercontigscaffold_490:18735..19300 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11211	2.03974	0.203741	0.827398	0.216487	0.171071	0.229433	0.38644	1.30242	0.175793	1.70263	0.876999	2.12618	1.43416	1.26597	0.427102	0.939786	1.095	1.92693	0.414825	2.33115	1.43411	0.614878	3.91806	0.446428	0.704515	0.932533	0.741315	0.424415	1.35716
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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