|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068940 ID=TCONS_00068940|Name=TCONS_00068940|organism=Clytia hemisphaerica|type=transcript|length=1660bp
AAGTACAtggcgtcctccagctttttggtcccccctaatatgagctaaaa
tcccccatctggcctttcccccccacctgtctttaaaattcgtgCTCCCC
CCCTaattgggaaatccccctagccgtattggataagggttgcgaagtga
tgatccagactcacctcaattcgcaagctactatagcaaaaaaaagactc
tcaaTATCCCAagaaagacaggctcataagcctgaatgcccaaacacacc
aggaaggtctgtatttatcctattactccccccactaggtagaggactga
atataccccctattcgcctttctccccccgtcaagcttgaaattttcact
tcccccctggcaccaaaatctgattcccccccccccatcttcctgggggg
ggatgatcccatgaAGTACTCCTATGGTTGAAACCTGAACATTGAAAGAT
GTTTTGTGTGTTTTTAACCCATTGAAAGATGACGTAACATTataatgacg
tcaccaaataaTGACACAATTTAATTGTCTTTTTTATTGGCTTCAATTTA
CAATTTACAATTTAATGATAATATCGACTTGATACGCTTGAAAGCCCTTG
AAGTCCATCTACATTTTATTTATgtctttcaagtttttcaaaaagatttt
atctACCCTATCTAAATGGGAAGAATCCCTTCTAATCTATTCTTTTAGAA
TTTTCGTGTACAAAAAAATAGGATTGAAATTGGATATGTTAGAGCGGTTT
ACAActctttatttttaaaacagTGACTTGGCTTAAACATGATGAATAAT
TTACAAATCATCGAACCCAAAAAAAAGAGTACTGTAAATGTtccttttct
caaaatttttatagAACGAAAAATTACAGTGTTTAAAGTTACATTTTTAT
TTGTTGAATGCTTGGGAGTGTTTTCGTGAGTTTTTTGTAGGTAAGGCCGA
AATAAGCATGAAGTTAAAAGAATCTTGACGTCTTTAACTGTCGTTTGCAA
TACCCACAAAATCACAGGtcgttgttttgaaatttatcacACTTAAACGA
TAGATTTAATGTTTAATATTATATTCTATCTACAAATTTATTGTCAAAAA
TTTATTGTNAGATTTAATGTTTAATATTATATTCTATCTacaaattattg
tcaaaaatttattgccaatttttttaattttacagtGATAATAAGATGAA
AACGTGAAATTTAAATTGCGTGACAGAGTATAGTGTTGTATTATTTTGAT
GCCAACAATACACCAGTACTATATAGGCTGTACCATATGTTTTCAGTCGA
TTTTagatacagttgacactctctaattcgattttcgaatatataaaatt
cttattataaattaaaatttgtcgttctttctagatggtctggaaacgtt
agatgtaCAGTCTCTGACGGTCATTTTCCAATATTATTGGATAATGAACG
TACGGTCATTTTCCAATATTATTGGATAATGAACGTATTAGAGAGCGTCA
AAAGTAATGTCTCTTTCAACGCTCAGGATCCTTATTAATTTCTTTTATTC
GTGGCTTGAGCGAAAATAATCACGTTATTATACTCTCAGTATGATTAGAT
CGTGCGCTGTTTCAATATCATTTTTATCAAGATAATCAATCTTATAAACG
CATGGAAGag Run BLAST on NCBI transcript from alignment at scaffold_49:735370..737029 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068940 ID=TCONS_00068940|Name=TCONS_00068940|organism=Clytia hemisphaerica|type=transcript|length=1660bp|location=Sequence derived from alignment at scaffold_49:735370..737029 (Clytia hemisphaerica)
ctCTTCCATGCGTTTATAAGATTGATTATCTTGATAAAAATGATATTGAA
ACAGCGCACGATCTAATCATACTGAGAGTATAATAACGTGATTATTTTCG
CTCAAGCCACGAATAAAAGAAATTAATAAGGATCCTGAGCGTTGAAAGAG
ACATTACTTTTGACGCTCTCTAATACGTTCATTATCCAATAATATTGGAA
AATGACCGTACGTTCATTATCCAATAATATTGGAAAATGACCGTCAGAGA
CTGtacatctaacgtttccagaccatctagaaagaacgacaaattttaat
ttataataagaattttatatattcgaaaatcgaattagagagtgtcaact
gtatctAAAATCGACTGAAAACATATGGTACAGCCTATATAGTACTGGTG
TATTGTTGGCATCAAAATAATACAACACTATACTCTGTCACGCAATTTAA
ATTTCACGTTTTCATCTTATTATCactgtaaaattaaaaaaattggcaat
aaatttttgacaataatttgtAGATAGAATATAATATTAAACATTAAATC
TNACAATAAATTTTTGACAATAAATTTGTAGATAGAATATAATATTAAAC
ATTAAATCTATCGTTTAAGTgtgataaatttcaaaacaacgaCCTGTGAT
TTTGTGGGTATTGCAAACGACAGTTAAAGACGTCAAGATTCTTTTAACTT
CATGCTTATTTCGGCCTTACCTACAAAAAACTCACGAAAACACTCCCAAG
CATTCAACAAATAAAAATGTAACTTTAAACACTGTAATTTTTCGTTctat
aaaaattttgagaaaaggaACATTTACAGTACTCTTTTTTTTGGGTTCGA
TGATTTGTAAATTATTCATCATGTTTAAGCCAAGTCActgttttaaaaat
aaagagTTGTAAACCGCTCTAACATATCCAATTTCAATCCTATTTTTTTG
TACACGAAAATTCTAAAAGAATAGATTAGAAGGGATTCTTCCCATTTAGA
TAGGGTagataaaatctttttgaaaaacttgaaagacATAAATAAAATGT
AGATGGACTTCAAGGGCTTTCAAGCGTATCAAGTCGATATTATCATTAAA
TTGTAAATTGTAAATTGAAGCCAATAAAAAAGACAATTAAATTGTGTCAt
tatttggtgacgtcattatAATGTTACGTCATCTTTCAATGGGTTAAAAA
CACACAAAACATCTTTCAATGTTCAGGTTTCAACCATAGGAGTACTtcat
gggatcatccccccccaggaagatgggggggggggaatcagattttggtg
ccaggggggaagtgaaaatttcaagcttgacggggggagaaaggcgaata
gggggtatattcagtcctctacctagtggggggagtaataggataaatac
agaccttcctggtgtgtttgggcattcaggcttatgagcctgtctttctT
GGGATAttgagagtcttttttttgctatagtagcttgcgaattgaggtga
gtctggatcatcacttcgcaacccttatccaatacggctagggggatttc
ccaattAGGGGGGGAGcacgaattttaaagacaggtgggggggaaaggcc
agatgggggattttagctcatattaggggggaccaaaaagctggaggacg
ccaTGTACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068940-exon-scaffold_49-1491911889:735370..737029 | TCONS_00068940-exon-scaffold_49-1491911889:735370..737029 | Clytia hemisphaerica | exon |
| TCONS_00068940-exon-scaffold_49-1510915933:735370..737029 | TCONS_00068940-exon-scaffold_49-1510915933:735370..737029 | Clytia hemisphaerica | exon |
| TCONS_00068940-exon-scaffold_49-1575043694:735370..737029 | TCONS_00068940-exon-scaffold_49-1575043694:735370..737029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:735370..737029 . |
Blast
The following BLAST results are available for this feature:
|
