TCONS_00068931 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068931
Unique NameTCONS_00068931
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068931 ID=TCONS_00068931|Name=TCONS_00068931|organism=Clytia hemisphaerica|type=transcript|length=786bp
AGCTAatgagattttaaaattttactacAAGATCTGTTCCACCTTTTACC
GAACACACTGTATTTGGTGTAAAGTGCATTGTTAATATACAATATATTGC
AAATGATAATGATTTatataattatattttttaagtcTTGATTAAAATGA
TATGATTTTCTGAACCGGCTGTAGGGTAGTTCCAAACATAGAAATAGGTG
TGAAACGTAGAAATCGACTCCACTAGAGAAATATATTTGTATTTTCTCTA
ATTAGTGAAAATCTGTAATTTCACCCACGTCTGCTCTCTGAGCATTTCTC
AAACAAGTTTACATTTCAAGATTCTACTTTAAATATATCTAGCAAACTCT
ACAGTACTTACAAAACACTTTGAAATCTTCAAACTTATAAATAATGATGT
AACAAACCAAAAGATAGTAATATGTCGtacgaaaacaaagaaagaaagag
cTAGATTCAATTTATAATTCTAAATGTGGTGCAAACTTCTTAAactttaa
ggcttcactttttttctgcttgagaaaggttgaaaatCCTTCTCtagggg
gccgtccacatagtacgtacgcactaagggagGAGGGgatatcttataaa
aagcgtatgcttgcgtacagggggagggagGGTCGAacgaaaatgtacgt
acgcaaaataaatattttcagccCTTTTTTGCATGTAAAATCGTGAGAAA
TAGATAAAGAGTCAATTGTTGTCCTGTTCTCGTGAAATAATGTACATATC
tgcttactcttaggtgccaaataaacgggggggggg
Run BLAST on NCBI

transcript from alignment at scaffold_49:461326..462111

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068931 ID=TCONS_00068931|Name=TCONS_00068931|organism=Clytia hemisphaerica|type=transcript|length=786bp|location=Sequence derived from alignment at scaffold_49:461326..462111 (Clytia hemisphaerica)
ccccccccccgtttatttggcacctaagagtaagcaGATATGTACATTAT
TTCACGAGAACAGGACAACAATTGACTCTTTATCTATTTCTCACGATTTT
ACATGCAAAAAAGggctgaaaatatttattttgcgtacgtacattttcgt
TCGACCctccctccccctgtacgcaagcatacgctttttataagatatcC
CCTCctcccttagtgcgtacgtactatgtggacggccccctaGAGAAGGa
ttttcaacctttctcaagcagaaaaaaagtgaagccttaaagtTTAAGAA
GTTTGCACCACATTTAGAATTATAAATTGAATCTAgctctttctttcttt
gttttcgtaCGACATATTACTATCTTTTGGTTTGTTACATCATTATTTAT
AAGTTTGAAGATTTCAAAGTGTTTTGTAAGTACTGTAGAGTTTGCTAGAT
ATATTTAAAGTAGAATCTTGAAATGTAAACTTGTTTGAGAAATGCTCAGA
GAGCAGACGTGGGTGAAATTACAGATTTTCACTAATTAGAGAAAATACAA
ATATATTTCTCTAGTGGAGTCGATTTCTACGTTTCACACCTATTTCTATG
TTTGGAACTACCCTACAGCCGGTTCAGAAAATCATATCATTTTAATCAAg
acttaaaaaatataattatatAAATCATTATCATTTGCAATATATTGTAT
ATTAACAATGCACTTTACACCAAATACAGTGTGTTCGGTAAAAGGTGGAA
CAGATCTTgtagtaaaattttaaaatctcatTAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042951XLOC_042951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068931-exon-scaffold_49-1491911889:461326..462111TCONS_00068931-exon-scaffold_49-1491911889:461326..462111Clytia hemisphaericaexon
TCONS_00068931-exon-scaffold_49-1510915933:461326..462111TCONS_00068931-exon-scaffold_49-1510915933:461326..462111Clytia hemisphaericaexon
TCONS_00068931-exon-scaffold_49-1575043694:461326..462111TCONS_00068931-exon-scaffold_49-1575043694:461326..462111Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:461326..462111 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0704281	0.0829181	0	0	0.148013	0.0518135	0	0	0	0.245357	0.424676	0	0	0	0.0473102	0	0	0.179886	0	0	0.192282	1.05625	2.18562	0.0843103	0	0.0692279	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068931 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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