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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068930 ID=TCONS_00068930|Name=TCONS_00068930|organism=Clytia hemisphaerica|type=transcript|length=1157bp
acttgttcttaacatttttgccatcgaagccttatattcttatttgttct
tataaaaaaacgtgtatatactGACCCACACCAGCCCACACACGTGTCCT
GAAACTCTGCGCATTGTTTTAGGTAAAAATAACAAACCCATATGGTAATC
AAAGGGTTACTAAGTTACATTTTTAAGATTGAAATTATCATTGGCTCgat
attctaaaaaaaaaacagctgaCTAAATCGTGACTGAAACAGTTGAAAAA
TTACATCGTTCTTCGTGAAGTTCTATGCTcttcacttttgaaaaaatccg
aaaaagtaTGTTTGTTCATAAGCGACACGTCCTTCGGAATCGTACATGCA
CGAAGTTATATCTTCCTTTTCACAGATTTCTCTCACTTTTTGTAATGTTT
CTTCATAATTTCGTGTATGAATTGAACATGCATACCATCTAAGATAATGG
TCAACTGAAGGTAATGGAATGCTTGCCTTCTCTTCTCTAACCTGAACGTT
TGTAAACCCTGAATTTAGGCCGAGCTCGATAAGCTCATCAGTCGAAATTC
CTGGGAAATAATTTCCGCCCAAGTATTCTCCATCTGGGTTAAGCTTTTCA
GAGATTGGCAGCATATTAATGGTATTTTGTTTTGTCATGTTAAATACAAA
GCTGCCCTCTTCTTTCAAAGTTTGCCTGATTccttcgaagattccttttc
gATCTTCTCTTGGTATCCAATGTACGACTGTTGACGCGACAGCTAAATCA
AAATCACTTCCAAACTTGGTCACTTCTTTCCCTGATGCCTCGTGAAAAGA
CAGGCTTGGTGAAATATAACTCGATTTTGCTTCAGAAATCCGGTCTTTGA
TAGGATCAATAGCAAGAACTTTGCCTTGCTCTCCGACCATTTGTGATAAT
TTGAAACTATTATTTCCagtgccacacccaatatccaAAATCTTCCATCC
ATTTTCGATTTTGATATCTTTGACCAAAGTGTCGaaaagtttttcttgaa
ttattTTGCTGAGTTCCAAATAGTCTTTGACTCCACTCTTTGTCTGGCTT
CTGAACTTTGCCATTTTTAGTTCTGAAAAACGGACATTCGATTAATTAGA
TAGCGCATTTCACACTTGTATGCGTGGGCTCACAATTTCTTATTTCCAAA
GCGCAAT Run BLAST on NCBI protein sequence of TCONS_00068930-protein >TCONS_00068930-protein ID=TCONS_00068930-protein|Name=TCONS_00068930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MAKFRSQTKSGVKDYLELSKIIQEKLFDTLVKDIKIENGWKILDIGCGTG
NNSFKLSQMVGEQGKVLAIDPIKDRISEAKSSYISPSLSFHEASGKEVTK
FGSDFDLAVASTVVHWIPREDRKGIFEGIRQTLKEEGSFVFNMTKQNTIN
MLPISEKLNPDGEYLGGNYFPGISTDELIELGLNSGFTNVQVREEKASIP
LPSVDHYLRWYACSIHTRNYEETLQKVREICEKEDITSCMYDSEGRVAYE
QTYFFGFFQK Run BLAST on NCBI transcript from alignment at scaffold_49:409173..410329 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068930 ID=TCONS_00068930|Name=TCONS_00068930|organism=Clytia hemisphaerica|type=transcript|length=1157bp|location=Sequence derived from alignment at scaffold_49:409173..410329 (Clytia hemisphaerica)
ATTGCGCTTTGGAAATAAGAAATTGTGAGCCCACGCATACAAGTGTGAAA
TGCGCTATCTAATTAATCGAATGTCCGTTTTTCAGAACTAAAAATGGCAA
AGTTCAGAAGCCAGACAAAGAGTGGAGTCAAAGACTATTTGGAACTCAGC
AAaataattcaagaaaaacttttCGACACTTTGGTCAAAGATATCAAAAT
CGAAAATGGATGGAAGATTTtggatattgggtgtggcactGGAAATAATA
GTTTCAAATTATCACAAATGGTCGGAGAGCAAGGCAAAGTTCTTGCTATT
GATCCTATCAAAGACCGGATTTCTGAAGCAAAATCGAGTTATATTTCACC
AAGCCTGTCTTTTCACGAGGCATCAGGGAAAGAAGTGACCAAGTTTGGAA
GTGATTTTGATTTAGCTGTCGCGTCAACAGTCGTACATTGGATACCAAGA
GAAGATcgaaaaggaatcttcgaaggAATCAGGCAAACTTTGAAAGAAGA
GGGCAGCTTTGTATTTAACATGACAAAACAAAATACCATTAATATGCTGC
CAATCTCTGAAAAGCTTAACCCAGATGGAGAATACTTGGGCGGAAATTAT
TTCCCAGGAATTTCGACTGATGAGCTTATCGAGCTCGGCCTAAATTCAGG
GTTTACAAACGTTCAGGTTAGAGAAGAGAAGGCAAGCATTCCATTACCTT
CAGTTGACCATTATCTTAGATGGTATGCATGTTCAATTCATACACGAAAT
TATGAAGAAACATTACAAAAAGTGAGAGAAATCTGTGAAAAGGAAGATAT
AACTTCGTGCATGTACGATTCCGAAGGACGTGTCGCTTATGAACAAACAt
actttttcggattttttcaaaagtgaagAGCATAGAACTTCACGAAGAAC
GATGTAATTTTTCAACTGTTTCAGTCACGATTTAGtcagctgtttttttt
ttagaatatcGAGCCAATGATAATTTCAATCTTAAAAATGTAACTTAGTA
ACCCTTTGATTACCATATGGGTTTGTTATTTTTACCTAAAACAATGCGCA
GAGTTTCAGGACACGTGTGTGGGCTGGTGTGGGTCagtatatacacgttt
ttttataagaacaaataagaatataaggcttcgatggcaaaaatgttaag
aacaagt Coding sequence (CDS) from alignment at scaffold_49:409173..410329 >TCONS_00068930 ID=TCONS_00068930|Name=TCONS_00068930|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at scaffold_49:409173..410329 (Clytia hemisphaerica)
ATGGCAAAGTTCAGAAGCCAGACAAAGAGTGGAGTCAAAGACTATTTGGA
ACTCAGCAAaataattcaagaaaaacttttCGACACTTTGGTCAAAGATA
TCAAAATCGAAAATGGATGGAAGATTTtggatattgggtgtggcactGGA
AATAATAGTTTCAAATTATCACAAATGGTCGGAGAGCAAGGCAAAGTTCT
TGCTATTGATCCTATCAAAGACCGGATTTCTGAAGCAAAATCGAGTTATA
TTTCACCAAGCCTGTCTTTTCACGAGGCATCAGGGAAAGAAGTGACCAAG
TTTGGAAGTGATTTTGATTTAGCTGTCGCGTCAACAGTCGTACATTGGAT
ACCAAGAGAAGATcgaaaaggaatcttcgaaggAATCAGGCAAACTTTGA
AAGAAGAGGGCAGCTTTGTATTTAACATGACAAAACAAAATACCATTAAT
ATGCTGCCAATCTCTGAAAAGCTTAACCCAGATGGAGAATACTTGGGCGG
AAATTATTTCCCAGGAATTTCGACTGATGAGCTTATCGAGCTCGGCCTAA
ATTCAGGGTTTACAAACGTTCAGGTTAGAGAAGAGAAGGCAAGCATTCCA
TTACCTTCAGTTGACCATTATCTTAGATGGTATGCATGTTCAATTCATAC
ACGAAATTATGAAGAAACATTACAAAAAGTGAGAGAAATCTGTGAAAAGG
AAGATATAACTTCGTGCATGTACGATTCCGAAGGACGTGTCGCTTATGAA
CAAACAtactttttcggattttttcaaaagtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068930-exon-scaffold_49-1491911889:409173..410329 | TCONS_00068930-exon-scaffold_49-1491911889:409173..410329 | Clytia hemisphaerica | exon |
| TCONS_00068930-exon-scaffold_49-1510915933:409173..410329 | TCONS_00068930-exon-scaffold_49-1510915933:409173..410329 | Clytia hemisphaerica | exon |
| TCONS_00068930-exon-scaffold_49-1575043694:409173..410329 | TCONS_00068930-exon-scaffold_49-1575043694:409173..410329 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:409173..410329 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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