TCONS_00068927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068927
Unique NameTCONS_00068927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068927 ID=TCONS_00068927|Name=TCONS_00068927|organism=Clytia hemisphaerica|type=transcript|length=322bp
attgattcgccgttcgatttgttcgattgacactgtctggaCAATTGTAA
TGCCTGCAACCGAAACGCTCCATCGCAACCAAGCTCACCTCCATATCCAA
CACCATCTCCAGAATATCCATTTCAACTTATCTGTGCCGAACTTCTTTCA
GTATGAAGGCCAACATTACCTGATAACAGTAGACAGATACTCAAATTGGC
CAACCATTGACCGCGCTCAAGAAGGATTGAAAGGCCTGATAGATTGTCTT
CGCAAACAGTTCTCCACTTTTGGTATTCCCGAGGAGCTAGCATCAGATGA
AGGACCAGAATTCAAATCACAC
Run BLAST on NCBI

protein sequence of TCONS_00068927-protein

>TCONS_00068927-protein ID=TCONS_00068927-protein|Name=TCONS_00068927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
LIRRSICSIDTVWTIVMPATETLHRNQAHLHIQHHLQNIHFNLSVPNFFQ
YEGQHYLITVDRYSNWPTIDRAQEGLKGLIDCLRKQFSTFGIPEELASDE
GPEFKSH
Run BLAST on NCBI

transcript from alignment at scaffold_49:375137..375458

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068927 ID=TCONS_00068927|Name=TCONS_00068927|organism=Clytia hemisphaerica|type=transcript|length=322bp|location=Sequence derived from alignment at scaffold_49:375137..375458 (Clytia hemisphaerica)
GTGTGATTTGAATTCTGGTCCTTCATCTGATGCTAGCTCCTCGGGAATAC
CAAAAGTGGAGAACTGTTTGCGAAGACAATCTATCAGGCCTTTCAATCCT
TCTTGAGCGCGGTCAATGGTTGGCCAATTTGAGTATCTGTCTACTGTTAT
CAGGTAATGTTGGCCTTCATACTGAAAGAAGTTCGGCACAGATAAGTTGA
AATGGATATTCTGGAGATGGTGTTGGATATGGAGGTGAGCTTGGTTGCGA
TGGAGCGTTTCGGTTGCAGGCATTACAATTGtccagacagtgtcaatcga
acaaatcgaacggcgaatcaat

Coding sequence (CDS) from alignment at scaffold_49:375137..375458

>TCONS_00068927 ID=TCONS_00068927|Name=TCONS_00068927|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_49:375137..375458 (Clytia hemisphaerica)
GTGTGATTTGAATTCTGGTCCTTCATCTGATGCTAGCTCCTCGGGAATAC
CAAAAGTGGAGAACTGTTTGCGAAGACAATCTATCAGGCCTTTCAATCCT
TCTTGAGCGCGGTCAATGGTTGGCCAATTTGAGTATCTGTCTACTGTTAT
CAGGTAATGTTGGCCTTCATACTGAAAGAAGTTCGGCACAGATAAGTTGA
AATGGATATTCTGGAGATGGTGTTGGATATGGAGGTGAGCTTGGTTGCGA
TGGAGCGTTTCGGTTGCAGGCATTACAATTGtccagacagtgtcaatcga
acaaatcgaacggcgaatcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042947XLOC_042947Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068927-exon-scaffold_49-1491911889:375137..375458TCONS_00068927-exon-scaffold_49-1491911889:375137..375458Clytia hemisphaericaexon
TCONS_00068927-exon-scaffold_49-1510915933:375137..375458TCONS_00068927-exon-scaffold_49-1510915933:375137..375458Clytia hemisphaericaexon
TCONS_00068927-exon-scaffold_49-1575043694:375137..375458TCONS_00068927-exon-scaffold_49-1575043694:375137..375458Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068927-proteinTCONS_00068927-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:375137..375458 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0433107	1.24442	2.93843	0.839489	0.423356	1.67271	2.42166	1.13357	1.08789	1.52961	1.74069	0.718881	0.574137	1.03616	0.356523	1.51132	0.37774	0.483105	0	1.66189	0.413859	0	0	0	1.34822	0	0	0.918806	0.583464	0.0998544
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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