TCONS_00068926 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068926
Unique NameTCONS_00068926
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068926 ID=TCONS_00068926|Name=TCONS_00068926|organism=Clytia hemisphaerica|type=transcript|length=311bp
GAACGATTGGTCCGAACACACCAAACAACTCCCGCCACTTAAAATTGGTG
ACCATGTTAGGGTCCAGAACCAACTTGGACCCCACCCACACAAATGGGAC
AAAACAGGCAAAGTTGTTGAAGTTCATCAATTTGACAAATAAACAGTTCA
AATGGACGGCTCTGGTCTGCCAACAAATCGCAATCGACGGTTCTTACGCA
AATTCGTCCCAGCTGTCCAGAAGACTGCACACCGCCATCCAATTCATGAC
TTCAAATACATCCAACCAGCGAAACTTGATGGCCCAATGGAAACACCTTG
ATCCACTCCAG
Run BLAST on NCBI

protein sequence of TCONS_00068926-protein

>TCONS_00068926-protein ID=TCONS_00068926-protein|Name=TCONS_00068926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
TIGPNTPNNSRHLKLVTMLGSRTNLDPTHTNGTKQAKLLKFINLTNKQFK
WTALVCQQIAIDGSYANSSQLSRRLHTAIQFMTSNTSNQRNLMAQWKHLD
PLQ
Run BLAST on NCBI

transcript from alignment at scaffold_49:374477..374787

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068926 ID=TCONS_00068926|Name=TCONS_00068926|organism=Clytia hemisphaerica|type=transcript|length=311bp|location=Sequence derived from alignment at scaffold_49:374477..374787 (Clytia hemisphaerica)
CTGGAGTGGATCAAGGTGTTTCCATTGGGCCATCAAGTTTCGCTGGTTGG
ATGTATTTGAAGTCATGAATTGGATGGCGGTGTGCAGTCTTCTGGACAGC
TGGGACGAATTTGCGTAAGAACCGTCGATTGCGATTTGTTGGCAGACCAG
AGCCGTCCATTTGAACTGTTTATTTGTCAAATTGATGAACTTCAACAACT
TTGCCTGTTTTGTCCCATTTGTGTGGGTGGGGTCCAAGTTGGTTCTGGAC
CCTAACATGGTCACCAATTTTAAGTGGCGGGAGTTGTTTGGTGTGTTCGG
ACCAATCGTTC

Coding sequence (CDS) from alignment at scaffold_49:374477..374787

>TCONS_00068926 ID=TCONS_00068926|Name=TCONS_00068926|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_49:374477..374787 (Clytia hemisphaerica)
CTGGAGTGGATCAAGGTGTTTCCATTGGGCCATCAAGTTTCGCTGGTTGG
ATGTATTTGAAGTCATGAATTGGATGGCGGTGTGCAGTCTTCTGGACAGC
TGGGACGAATTTGCGTAAGAACCGTCGATTGCGATTTGTTGGCAGACCAG
AGCCGTCCATTTGAACTGTTTATTTGTCAAATTGATGAACTTCAACAACT
TTGCCTGTTTTGTCCCATTTGTGTGGGTGGGGTCCAAGTTGGTTCTGGAC
CCTAACATGGTCACCAATTTTAAGTGGCGGGAGTTGTTTGGTGTGTTCGG
ACCAATCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042946XLOC_042946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068926-exon-scaffold_49-1491911889:374477..374787TCONS_00068926-exon-scaffold_49-1491911889:374477..374787Clytia hemisphaericaexon
TCONS_00068926-exon-scaffold_49-1510915933:374477..374787TCONS_00068926-exon-scaffold_49-1510915933:374477..374787Clytia hemisphaericaexon
TCONS_00068926-exon-scaffold_49-1575043694:374477..374787TCONS_00068926-exon-scaffold_49-1575043694:374477..374787Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068926-proteinTCONS_00068926-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:374477..374787 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61998	0.564145	0.160874	1.44626	0.789452	0.411586	0	1.08499	0.29299	0.421336	1.6353	0.538442	1.18825	0	0.759727	0	0.261008	0.267525	0	1.48857	0.792852	0	0.336553	0.476323	0.0989855	1.35318	0	0.508799	0.213925	0.92438
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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