TCONS_00068916 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068916
Unique NameTCONS_00068916
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068916 ID=TCONS_00068916|Name=TCONS_00068916|organism=Clytia hemisphaerica|type=transcript|length=611bp
TTTGCTTAGCTTCATTCAAGGAATTAGCAAGGTCTTGGATGGTTGTTACA
AGTTGGGATTCACATGACCAATGTTTCCTGAAGCCATTCTGGCTATCTGT
CAGAATGTTAGCGTTGTCAAGGTGGGCCATAATGTTGATGTGTAAAATAT
GCTCCAAAATCTTACAGGATGTGGAGGTAAGACTAATTGGCCTGTAGTTA
CAGGCTTTGGATTTGTCGGTTTTACCAGGTTTGAATACAGGGGCAACCAG
GGCATGCCTCCAGTCATCTGGGATGGAAGACTGTTTGAGTGAAACTTGCA
TCACTAAGGTGAGACCAGGAGATATTTGATCAGCAAACTTGTTGAAAAAT
CTTGATGCGACACCATCTGGACCAGCAGCTTTGTTAGGGTTCATATCATT
AAAGGAGTTTCCGAACACCAGGCTCTGTGATATTGATTTCTGGCATGGGT
GTATTCGCTTGACCCTGCAAGGGTAGGATTCGACCGTCAGGAATGGAGAA
GACATTTGAAAACTGTTTGTTGAGGGTGTTTGCTTTCTTGGTGTTATCAA
TGTGTAAGCTGCTGTTGTCTTGCAGAGGTACTACTCCATTATCTTCACAT
CTACGGGATTT
Run BLAST on NCBI

transcript from alignment at scaffold_49:12508..13118

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068916 ID=TCONS_00068916|Name=TCONS_00068916|organism=Clytia hemisphaerica|type=transcript|length=611bp|location=Sequence derived from alignment at scaffold_49:12508..13118 (Clytia hemisphaerica)
AAATCCCGTAGATGTGAAGATAATGGAGTAGTACCTCTGCAAGACAACAG
CAGCTTACACATTGATAACACCAAGAAAGCAAACACCCTCAACAAACAGT
TTTCAAATGTCTTCTCCATTCCTGACGGTCGAATCCTACCCTTGCAGGGT
CAAGCGAATACACCCATGCCAGAAATCAATATCACAGAGCCTGGTGTTCG
GAAACTCCTTTAATGATATGAACCCTAACAAAGCTGCTGGTCCAGATGGT
GTCGCATCAAGATTTTTCAACAAGTTTGCTGATCAAATATCTCCTGGTCT
CACCTTAGTGATGCAAGTTTCACTCAAACAGTCTTCCATCCCAGATGACT
GGAGGCATGCCCTGGTTGCCCCTGTATTCAAACCTGGTAAAACCGACAAA
TCCAAAGCCTGTAACTACAGGCCAATTAGTCTTACCTCCACATCCTGTAA
GATTTTGGAGCATATTTTACACATCAACATTATGGCCCACCTTGACAACG
CTAACATTCTGACAGATAGCCAGAATGGCTTCAGGAAACATTGGTCATGT
GAATCCCAACTTGTAACAACCATCCAAGACCTTGCTAATTCCTTGAATGA
AGCTAAGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042936XLOC_042936Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068916-exon-scaffold_49-1491911889:12508..13118TCONS_00068916-exon-scaffold_49-1491911889:12508..13118Clytia hemisphaericaexon
TCONS_00068916-exon-scaffold_49-1510915933:12508..13118TCONS_00068916-exon-scaffold_49-1510915933:12508..13118Clytia hemisphaericaexon
TCONS_00068916-exon-scaffold_49-1575043694:12508..13118TCONS_00068916-exon-scaffold_49-1575043694:12508..13118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:12508..13118 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.108899	0.478369	0.166236	0.060591	0.119014	0.0940466	0.115744	0	0.0743692	0	0	0	0.0586944	0.0609547	0	0.0953157	0	0	0.170848	0.302931	0.186501	0	0	0.0943088	0	0.16913	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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