TCONS_00068914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068914
Unique NameTCONS_00068914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068914 ID=TCONS_00068914|Name=TCONS_00068914|organism=Clytia hemisphaerica|type=transcript|length=618bp
ATCCAAGTGGGTTTCAGATCCAATGATAACATCAATGTTAACATCAAATA
GTGCATCTTTTAGGAGTTCATTCTTGTCCCAGAAACTCGGCAGTTTATGC
ACAAGATGGGGATTTGTTTGGCTTATAGCTTTGGTGTGTCATCGCTGGCA
TTAAACATGTTGAGGAGTTGAGGGTATTGTCAAATAATAATGGGTTGATA
TTTTTGATACCACAGTTGCAACATTCCCAAGTGAGATGAGGAGTTTATTC
ATAGGCTTGGTAGATAAGACTGTTCATTTCAATAAATCTTTGTGGGAACC
ATTGGTCACACGAGTGGCAAGCTATTGCTCTTTGACCCCATTTCACAGCT
TTGTAACACTCGCCACATGGAAATTTAATAGAATGAGCTGGTCCTGGGTT
GGTTTCAATTTGACCACTAAGGATCAGTAACAAGTTGATCAGATGATAGG
TTGATTGTTTTCTGGGCTGAATTTTTGTATGATACTAGTTGTACAAAATA
GTGAAGAATACTTCTTTGGTTCCCATCATTTATGAATGTGATGTCAGTGT
TGAATACATATCTTATCTGTCTTTGATGTTGTTAGGTCTCAGCCAGATTG
TTGAAAACAACACAATTG
Run BLAST on NCBI

transcript from alignment at scaffold_49:10851..11468

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068914 ID=TCONS_00068914|Name=TCONS_00068914|organism=Clytia hemisphaerica|type=transcript|length=618bp|location=Sequence derived from alignment at scaffold_49:10851..11468 (Clytia hemisphaerica)
CAATTGTGTTGTTTTCAACAATCTGGCTGAGACCTAACAACATCAAAGAC
AGATAAGATATGTATTCAACACTGACATCACATTCATAAATGATGGGAAC
CAAAGAAGTATTCTTCACTATTTTGTACAACTAGTATCATACAAAAATTC
AGCCCAGAAAACAATCAACCTATCATCTGATCAACTTGTTACTGATCCTT
AGTGGTCAAATTGAAACCAACCCAGGACCAGCTCATTCTATTAAATTTCC
ATGTGGCGAGTGTTACAAAGCTGTGAAATGGGGTCAAAGAGCAATAGCTT
GCCACTCGTGTGACCAATGGTTCCCACAAAGATTTATTGAAATGAACAGT
CTTATCTACCAAGCCTATGAATAAACTCCTCATCTCACTTGGGAATGTTG
CAACTGTGGTATCAAAAATATCAACCCATTATTATTTGACAATACCCTCA
ACTCCTCAACATGTTTAATGCCAGCGATGACACACCAAAGCTATAAGCCA
AACAAATCCCCATCTTGTGCATAAACTGCCGAGTTTCTGGGACAAGAATG
AACTCCTAAAAGATGCACTATTTGATGTTAACATTGATGTTATCATTGGA
TCTGAAACCCACTTGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042935XLOC_042935Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068914-exon-scaffold_49-1491911889:10851..11468TCONS_00068914-exon-scaffold_49-1491911889:10851..11468Clytia hemisphaericaexon
TCONS_00068914-exon-scaffold_49-1510915933:10851..11468TCONS_00068914-exon-scaffold_49-1510915933:10851..11468Clytia hemisphaericaexon
TCONS_00068914-exon-scaffold_49-1575043694:10851..11468TCONS_00068914-exon-scaffold_49-1575043694:10851..11468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:10851..11468 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.15465	0.88974	1.85402	0.205957	0.233955	0.092437	0	0.20881	0	0	0	0.0577701	0	0	0	0.109422	0	0.0667432	0	0	0.167735	0.144987	0.0994574	0.180842	0.0931317	0	0.118941	0.50775	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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