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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068910 ID=TCONS_00068910|Name=TCONS_00068910|organism=Clytia hemisphaerica|type=transcript|length=1171bp
tatagaagaagttatttcaaaaatacttcagaaGAAATTATCATCTTTGA
TAAAGTGCAAAACTTATGATGACTTCCAATCAAAGAATTCGCTTGGTGTG
GTGGCTAGTGTTTTGTCTTTCAATCATTTCAAGCATTTGTGGAAGCAAAA
CTACCGAATCGAAAGTTAATcgttcaaaaagaaatttaggaGGAATTCTT
CAAAATACAGAGCTTCCACGTGGAAAAAAAGGCGAAATATTCGAGGCTAC
ATTGGGAAAGCTAACACCAATTCTATCTTCATACCATCTTGATAAAGCTG
CCGAAGACgcttttccaaaaaatctcGAGGAGTTGAGTAAAACAAGTAAA
ACCTACCATTCAATCCCAGAGGTTGCGCTAAGAGGAACGAAGGGTACTGC
TGCTATCTATGATATTGTAATGAAAAATCTTATTGCACAACAAAAGGACA
TCCCAAATTTACATGACGGGGCTGGTTTGACTTTATATCGTGGTGATGAC
CGTAATGCAGATCAAATAATTCAGGCTAACGGCTTTTTCGGCTTTGCTCC
TATCACAGTCGAGCATGCAAGACTAATCGCACCATATTGGCAAAACATGG
CGATGGCAGAAAAATGGCGAGTACAAACAGGAATTCATGGCCCTATGCCT
TTCGTAGCAACAACAccagaaaaaagtccccctAAAGGTAATTACCAATA
CGAAATAATGGTACCCATTCCAAAAGAGAGGGCCGAAGGATTGGGCGTGC
TTCTTCTTCACGAAGGaacaaatgaaaaagatttttccaaatccAATATC
ATTGCTCTTCGTATGAATGGCCATGAAACTGACTTTGTCACTGGTATTCC
CTTAAAATGGATCGTTGGATgcagaaaagaagaaaaagaggaaaaagagT
ATCTACCTTTAACGGATCCTAAATCTTCTTGTCGTTAACACTTTAAgatg
tacacattttttataagcaacacCATTTTCCCCTTCAGGTTTAAGGATGC
TTAGCCTTTCAAGctaatttttaaacaatttgtCTAAACCCCTCTCACAA
TTAAAATGCATTTCAGGTTCCACCATTTCCATTTCttagaatttgaaaat
atagtCCTCGGCCCTTAGCAACtaggttgcttataaaaaaagttaaaaaa
cgtgtaatccaATGTCATACN Run BLAST on NCBI protein sequence of TCONS_00068910-protein >TCONS_00068910-protein ID=TCONS_00068910-protein|Name=TCONS_00068910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MMTSNQRIRLVWWLVFCLSIISSICGSKTTESKVNRSKRNLGGILQNTEL
PRGKKGEIFEATLGKLTPILSSYHLDKAAEDAFPKNLEELSKTSKTYHSI
PEVALRGTKGTAAIYDIVMKNLIAQQKDIPNLHDGAGLTLYRGDDRNADQ
IIQANGFFGFAPITVEHARLIAPYWQNMAMAEKWRVQTGIHGPMPFVATT
PEKSPPKGNYQYEIMVPIPKERAEGLGVLLLHEGTNEKDFSKSNIIALRM
NGHETDFVTGIPLKWIVGCRKEEKEEKEYLPLTDPKSSCR Run BLAST on NCBI transcript from alignment at scaffold_49:823074..824352- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068910 ID=TCONS_00068910|Name=TCONS_00068910|organism=Clytia hemisphaerica|type=transcript|length=1279bp|location=Sequence derived from alignment at scaffold_49:823074..824352- (Clytia hemisphaerica)
TATAGAAGAAGTTATTTCAAAAATACTTCAGAAGAAATTATCATCTTTGA
TAAAGTGCAAAACTTATGATGACTTCCAATCAAAGAATTCGCTTGGTGTG
GTGGCTAGTGTTTTGTCTTTCAATCATTTCAAGGTATTATTTTTCTATCA
AGTTTTTACCTATTTGCTTGGATAGTTTTCTGGATGGACTTTCAAGAATT
ACCGCTTTGAATTACAACCCCTTTTTTTAATCTCACTTTAGCATTTGTGG
AAGCAAAACTACCGAATCGAAAGTTAATCGTTCAAAAAGAAATTTAGGAG
GAATTCTTCAAAATACAGAGCTTCCACGTGGAAAAAAAGGCGAAATATTC
GAGGCTACATTGGGAAAGCTAACACCAATTCTATCTTCATACCATCTTGA
TAAAGCTGCCGAAGACGCTTTTCCAAAAAATCTCGAGGAGTTGAGTAAAA
CAAGTAAAACCTACCATTCAATCCCAGAGGTTGCGCTAAGAGGAACGAAG
GGTACTGCTGCTATCTATGATATTGTAATGAAAAATCTTATTGCACAACA
AAAGGACATCCCAAATTTACATGACGGGGCTGGTTTGACTTTATATCGTG
GTGATGACCGTAATGCAGATCAAATAATTCAGGCTAACGGCTTTTTCGGC
TTTGCTCCTATCACAGTCGAGCATGCAAGACTAATCGCACCATATTGGCA
AAACATGGCGATGGCAGAAAAATGGCGAGTACAAACAGGAATTCATGGCC
CTATGCCTTTCGTAGCAACAACACCAGAAAAAAGTCCCCCTAAAGGTAAT
TACCAATACGAAATAATGGTACCCATTCCAAAAGAGAGGGCCGAAGGATT
GGGCGTGCTTCTTCTTCACGAAGGAACAAATGAAAAAGATTTTTCCAAAT
CCAATATCATTGCTCTTCGTATGAATGGCCATGAAACTGACTTTGTCACT
GGTATTCCCTTAAAATGGATCGTTGGATGCAGAAAAGAAGAAAAAGAGGA
AAAAGAGTATCTACCTTTAACGGATCCTAAATCTTCTTGTCGTTAACACT
TTAAGATGTACACATTTTTTATAAGCAACACCATTTTCCCCTTCAGGTTT
AAGGATGCTTAGCCTTTCAAGCTAATTTTTAAACAATTTGTCTAAACCCC
TCTCACAATTAAAATGCATTTCAGGTTCCACCATTTCCATTTCTTAGAAT
TTGAAAATATAGTCCTCGGCCCTTAGCAACTAGGTTGCTTATAAAAAAAG
TTAAAAAACGTGTAATCCAATGTCATACN Coding sequence (CDS) from alignment at scaffold_49:823074..824352- >TCONS_00068910 ID=TCONS_00068910|Name=TCONS_00068910|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at scaffold_49:823074..824352- (Clytia hemisphaerica)
CATTTGTGGAAGCAAAACTACCGAATCGAAAGTTAATCGTTCAAAAAGAA
ATTTAGGAGGAATTCTTCAAAATACAGAGCTTCCACGTGGAAAAAAAGGC
GAAATATTCGAGGCTACATTGGGAAAGCTAACACCAATTCTATCTTCATA
CCATCTTGATAAAGCTGCCGAAGACGCTTTTCCAAAAAATCTCGAGGAGT
TGAGTAAAACAAGTAAAACCTACCATTCAATCCCAGAGGTTGCGCTAAGA
GGAACGAAGGGTACTGCTGCTATCTATGATATTGTAATGAAAAATCTTAT
TGCACAACAAAAGGACATCCCAAATTTACATGACGGGGCTGGTTTGACTT
TATATCGTGGTGATGACCGTAATGCAGATCAAATAATTCAGGCTAACGGC
TTTTTCGGCTTTGCTCCTATCACAGTCGAGCATGCAAGACTAATCGCACC
ATATTGGCAAAACATGGCGATGGCAGAAAAATGGCGAGTACAAACAGGAA
TTCATGGCCCTATGCCTTTCGTAGCAACAACACCAGAAAAAAGTCCCCCT
AAAGGTAATTACCAATACGAAATAATGGTACCCATTCCAAAAGAGAGGGC
CGAAGGATTGGGCGTGCTTCTTCTTCACGAAGGAACAAATGAAAAAGATT
TTTCCAAATCCAATATCATTGCTCTTCGTATGAATGGCCATGAAACTGAC
TTTGTCACTGGTATTCCCTTAAAATGGATCGTTGGATGCAGAAAAGAAGA
AAAAGAGGAAAAAGAGTATCTACCTTTAACGGATCCTAAATCTTCTTGTC
GTTAAATGATGACTTCCAATCAAAGAATTCGCTTGGTGTGGTGGCTAGTG
TTTTGTCTTTCAATCATTTCAAGCATTTGTGGAAGCAAAACTACCGAATC
GAAAGTTAATCGTTCAAAAAGAAATTTAGGAGGAATTCTTCAAAATACAG
AGCTTCCACGTGGAAAAAAAGGCGAAATATTCGAGGCTACATTGGGAAAG
CTAACACCAATTCTATCTTCATACCATCTTGATAAAGCTGCCGAAGACGC
TTTTCCAAAAAATCTCGAGGAGTTGAGTAAAACAAGTAAAACCTACCATT
CAATCCCAGAGGTTGCGCTAAGAGGAACGAAGGGTACTGCTGCTATCTAT
GATATTGTAATGAAAAATCTTATTGCACAACAAAAGGACATCCCAAATTT
ACATGACGGGGCTGGTTTGACTTTATATCGTGGTGATGACCGTAATGCAG
ATCAAATAATTCAGGCTAACGGCTTTTTCGGCTTTGCTCCTATCACAGTC
GAGCATGCAAGACTAATCGCACCATATTGGCAAAACATGGCGATGGCAGA
AAAATGGCGAGTACAAACAGGAATTCATGGCCCTATGCCTTTCGTAGCAA
CAACACCAGAAAAAAGTCCCCCTAAAGGTAATTACCAATACGAAATAATG
GTACCCATTCCAAAAGAGAGGGCCGAAGGATTGGGCGTGCTTCTTCTTCA
CGAAGGAACAAATGAAAAAGATTTTTCCAAATCCAATATCATTGCTCTTC
GTATGAATGGCCATGAAACTGACTTTGTCACTGGTATTCCCTTAAAATGG
ATCGTTGGATGCAGAAAAGAAGAAAAAGAGGAAAAAGAGTATCTACCTTT
AACGGATCCTAAATCTTCTTGTCGTTAAATGATGACTTCCAATCAAAGAA
TTCGCTTGGTGTGGTGGCTAGTGTTTTGTCTTTCAATCATTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068910-exon-scaffold_49-1575043694:824220..824352 | TCONS_00068910-exon-scaffold_49-1575043694:824220..824352 | Clytia hemisphaerica | exon |
| TCONS_00068910-exon-scaffold_49-1575043694:823074..824111 | TCONS_00068910-exon-scaffold_49-1575043694:823074..824111 | Clytia hemisphaerica | exon |
| TCONS_00068910-exon-scaffold_49-1510915933:824220..824352 | TCONS_00068910-exon-scaffold_49-1510915933:824220..824352 | Clytia hemisphaerica | exon |
| TCONS_00068910-exon-scaffold_49-1510915933:823074..824111 | TCONS_00068910-exon-scaffold_49-1510915933:823074..824111 | Clytia hemisphaerica | exon |
| TCONS_00068910-exon-scaffold_49-1491911889:824220..824352 | TCONS_00068910-exon-scaffold_49-1491911889:824220..824352 | Clytia hemisphaerica | exon |
| TCONS_00068910-exon-scaffold_49-1491911889:823074..824111 | TCONS_00068910-exon-scaffold_49-1491911889:823074..824111 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:823074..824352 - |
Blast
The following BLAST results are available for this feature:
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