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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068874 ID=TCONS_00068874|Name=TCONS_00068874|organism=Clytia hemisphaerica|type=transcript|length=2124bp
AGTGAGACAGTGGTCTGTGTAGATTTCCAGACTAATAAACCTTTCATCCG
TATGTTATTTTTCTCCTGAAGTTTTTTATAAAGTTCACTAGTTTCCTATT
CTACTTCTAGAAGATACCCCTGtctctcagtgacccggtggagTTTCGCC
CTCAGTGGGAATGAAAATTGCAATCCAAATCCCAATGggtggggatagaa
aatctattgtttccatcTGCAATCGGTGcaataacatattggcacttttg
gctgatttaccatttttcgaaaattgaagttcgagcgagaatgtcaattt
caggccttcaacttgatttcaacgattattttgatgggagggatttattg
atttctaggctatatttcaagcccgactggaccatttttgagggggcctt
ttgaacttttggatcttcagatcctaaggtcctcctaagtctagcgttaa
aactctacacttccAACATACTATAaagcacttgcaaatcgattgtggtt
tcaaaacaccccggtggatttcctttttgtgccaagtatttcgtcACCGA
TCGTGGAAGAGTCCATGGAAATGGTTTTGGGGtgcaattttcattttcat
ttccattCAATTTCCCATTGGGATACAAATGATAAGGTAATTTctcagtg
gggttgaaattttgGATCATTTTTCAACGGGGAAAATCATTTGGGTGGAA
GCtttaccgggtctgtgaaacGTGCGTGTTAgtagaaacttttaaaaagt
tgtttagatatattttaattctttcacaaaaaaataaataatagttccat
ttatactgagacggaaaaatcgtctgagacgagaagtttgtaaaatgtga
tctgtggaggagatcctatttattgaaacctgaatggaaagtacactcct
ccataatgctcattttctaaattgctcgtcgcatacaaattaatcgtctc
agtataaatagaactaatatatagtttttattaaatatacaaaaaaataa
ctATAATAATTCATTTGGAAAGCCTACTACCTACTTTTTGTTTTGTCAAA
AAGAAAGACACGTGACAAATTAACAGATCAACACGACAGTATTATGGCAA
AATCTACTGGTGAATTTGAAAACTTCAGTTTTAAGAATCTACAAAAGTGT
TTTTCAATCTAACAGATTCGGAAGAATTTGGAGagtctgaaataaaaaat
cctatCAAATCGTCTTTACAAAGATGTTATTCATTGACAGTCCATGATCG
TATTTTACCAAGTAGAGATTTATCTACTAAGTCATCTCATTAGAATAACT
ATTGGTGAAGATCTATTTTCCAGCTGGTCCTGGCCCACAGCACATTCTTG
GACATTGTGGAGCACATTGTTGTTGGCAAAGAGATGGACATCCAGATTGC
ATTTGCATTGGCATTGGAGCTGGCATCATCATTGGAGCAGGCATCATCAT
TGGTTGTTGCATACCAGCACCACAGCATGATTGCTGTTGACATTGTGCAC
TGCATTGTTGTGCACAGGATGGTGCGCAACCTGCTGGCATTGGTGGTGGA
GCCATCATTGGTGGAGTTTGTGGACAGCATTGACGTGGGCATGATGGTGC
ACAGCTTTGTTGGCAAGCTGGGTTACATCCAGCCGGCATTTGTGGAGGCA
TCATCATCATTTGTGGAGGTTGCATCATTCCTGGTTGTGGACAGCAAGAT
GTTGGACAGCCAACTTGGCAAGATCCAGGTTGGCATTGTTGTGGACAAGC
TTGTGCAGCTGGCAATTGGAAGATTTGTGGAGGTAAAACTTGGACTTTGA
ATTGCATTGCTGGTTGTTGGACACATCCAGGGTTACAGCTTGGTGGTGGC
ATGCAACTTGGTGGCATACAGGCTTGTGGCATACAGCTTGGTGGAGCACA
TCCTTGTGGCATACATACATCCTGGTGGGGCACATCCTTGTGGCATACAT
CCTGGTTGGCACGAAGGCATCATTCCAGGCATCATCATTGGCATAGGCAT
CATCATGGGTTGTTGTGGCATTGGCATACCAGACATACAACAGCTTGGTG
AACATCCAGATTGGGCACAATCTTGTGGACATGGTTGTGGACATTTCAAA
GCACGTTGTGGTGGTGGTCGGACT Run BLAST on NCBI transcript from alignment at scaffold_49:498320..500568- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068874 ID=TCONS_00068874|Name=TCONS_00068874|organism=Clytia hemisphaerica|type=transcript|length=2249bp|location=Sequence derived from alignment at scaffold_49:498320..500568- (Clytia hemisphaerica)
AGTGAGACAGTGGTCTGTGTAGATTTCCAGACTAATAAACCTTTCATCCG
TATGTTATTTTTCTCCTGAAGTTTTTTATAAAGTTCACTAGTTTCCTATT
CTACTTCTAGAAGATACCCCTGTCTCTCAGTGACCCGGTGGAGTTTCGCC
CTCAGTGGGAATGAAAATTGCAATCCAAATCCCAATGGGTGGGGATAGAA
AATCTATTGTTTCCATCTGCAATCGGTGCAATAACATATTGGCACTTTTG
GCTGATTTACCATTTTTCGAAAATTGAAGTTCGAGCGAGAATGTCAATTT
CAGGCCTTCAACTTGATTTCAACGATTATTTTGATGGGAGGGATTTATTG
ATTTCTAGGCTATATTTCAAGCCCGACTGGACCATTTTTGAGGGGGCCTT
TTGAACTTTTGGATCTTCAGATCCTAAGGTCCTCCTAAGTCTAGCGTTAA
AACTCTACACTTCCAACATACTATAAAGCACTTGCAAATCGATTGTGGTT
TCAAAACACCCCGGTGGATTTCCTTTTTGTGCCAAGTATTTCGTCACCGA
TCGTGGAAGAGTCCATGGAAATGGTTTTGGGGTGCAATTTTCATTTTCAT
TTCCATTCAATTTCCCATTGGGATACAAATGATAAGGTAATTTCTCAGTG
GGGTTGAAATTTTGGATCATTTTTCAACGGGGAAAATCATTTGGGTGGAA
GCTTTACCGGGTCTGTGAAACGTGCGTGTTAGTAGAAACTTTTAAAAAGT
TGTTTAGATATATTTTAATTCTTTCACAAAAAAATAAATAATAGTTCCAT
TTATACTGAGACGGAAAAATCGTCTGAGACGAGAAGTTTGTAAAATGTGA
TCTGTGGAGGAGATCCTATTTATTGAAACCTGAATGGAAAGTACACTCCT
CCATAATGCTCATTTTCTAAATTGCTCGTCGCATACAAATTAATCGTCTC
AGTATAAATAGAACTAATATATAGTTTTTATTAAATATACAAAAAAATAA
CTATAATAATTCATTTGGAAAGCCTACTACCTACTTTTTGTTTTGTCAAA
AAGAAAGACACGTGACAAATTAACAGATCAACACGACAGTATTATGGCAA
AATCTACTGGTGAATTTGAAAACTTCAGTTTTAAGAATCTACAAAAGTGT
TTTTCAATCTAACAGATTCGGAAGAATTTGGAGAGTCTGAAATAAAAAAT
CCTATCAAATCGTCTTTACAAAGATGTTATTCATTGACAGTCCATGATCG
TATTTTACCAAGTAGAGATTTATCTACTAAGTCATCTCATTAGAATAACT
ATTGGTGAAGATCTATTTTCCAGCTGGTCCTGGCCCACAGCACATTCTTG
GACATTGTGGAGCACATTGTTGTTGGCAAAGAGATGGACATCCAGATTGC
ATTTGCATTGGCATTGGAGCTGGCATCATCATTGGAGCAGGCATCATCAT
TGGTTGTTGCATACCAGCACCACAGCATGATTGCTGTTGACATTGTGCAC
TGCATTGTTGTGCACAGGATGGTGCGCAACCTGCTGGCATTGGTGGTGGA
GCCATCATTGGTGGAGTTTGTGGACAGCATTGACGTGGGCATGATGGTGC
ACAGCTTTGTTGGCAAGCTGGGTTACATCCAGCCGGCATTTGTGGAGGCA
TCATCATCATTTGTGGAGGTTGCATCATTCCTGGTTGTGGACAGCAAGAT
GTTGGACAGCCAACTTGGCAAGATCCAGGTTGGCATTGTTGTGGACAAGC
TTGTGCAGCTGGCAATTGGAAGATTTGTGGAGGTAAAACTTGGACTTTGA
ATTGCATTGCTGGTTGTTGGACACATCCAGGGTTACAGCTTGGTGGTGGC
ATGCAACTTGGTGGCATACAGGCTTGTGGCATACAGCTTGGTGGAGCACA
TCCTTGTGGCATACATCCTGGTTGACAAGAAGCTTGTTGAGCCATTTGCA
TAGGCATCATAGCTTGCTGTTGTGGGACGCATCCAGGATTACAGCTGGCT
GGTGGTTGACAACCTGGTGGTGAGCATGGTGGAGGTGGCATACATCCTGG
TGGGGCACATCCTTGTGGCATACATCCTGGTTGGCACGAAGGCATCATTC
CAGGCATCATCATTGGCATAGGCATCATCATGGGTTGTTGTGGCATTGGC
ATACCAGACATACAACAGCTTGGTGAACATCCAGATTGGGCACAATCTTG
TGGACATGGTTGTGGACATTTCAAAGCACGTTGTGGTGGTGGTCGGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068874-exon-scaffold_49-1575043694:498655..500568 | TCONS_00068874-exon-scaffold_49-1575043694:498655..500568 | Clytia hemisphaerica | exon |
| TCONS_00068874-exon-scaffold_49-1575043694:498320..498529 | TCONS_00068874-exon-scaffold_49-1575043694:498320..498529 | Clytia hemisphaerica | exon |
| TCONS_00068874-exon-scaffold_49-1510915933:498655..500568 | TCONS_00068874-exon-scaffold_49-1510915933:498655..500568 | Clytia hemisphaerica | exon |
| TCONS_00068874-exon-scaffold_49-1510915933:498320..498529 | TCONS_00068874-exon-scaffold_49-1510915933:498320..498529 | Clytia hemisphaerica | exon |
| TCONS_00068874-exon-scaffold_49-1491911889:498655..500568 | TCONS_00068874-exon-scaffold_49-1491911889:498655..500568 | Clytia hemisphaerica | exon |
| TCONS_00068874-exon-scaffold_49-1491911889:498320..498529 | TCONS_00068874-exon-scaffold_49-1491911889:498320..498529 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:498320..500568 - |
Blast
The following BLAST results are available for this feature:
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