TCONS_00068868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068868
Unique NameTCONS_00068868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068868 ID=TCONS_00068868|Name=TCONS_00068868|organism=Clytia hemisphaerica|type=transcript|length=571bp
AGAACTTACTCAGACTCATATTGTCCCGATGGGATGACACTGGCTTTCTG
GATTCGTATTTTACGCGGGGATGAAAACAGAGACGGTTTCATGCTGCTTA
TTGGTCAAGGATCTGATGATGATGCTGCTGGTATAGTNTGCGTGGGGATG
AAAACAGAGACGGTTTCATGCTGCTTATTGATCAAGGAGCTGGTGATGAT
AATGCTGGTATAGCCATTAATGTCAAGCCTGACAAAACAGAAATAAACAT
CTACATCAAGCTCCTTAACAACCGATTGAAATGTCAATTTACGAATATTC
CCAACGATATTTATCGCCAATGGTTTTTCTTGAGCATGTCTTTCCAAAGA
ACGCCTTCAACAAAAATGGTTTGCTTTATGAATGAGGATCGTGTGGAGGT
GACAACATACAGTGCAACTACTTCTAGTCCACCCGCGTCTCGATTCTTCG
CTGGTGATCGAGGCAAATTCATGTTGGATGATATCCTCTATATTCCCAAG
TTTTCGACTGATGAAATTATTTCAACTATTTATGATAAAAccaaatcaaa
ctAAGCTAACCGGGTTTGACA
Run BLAST on NCBI

transcript from alignment at scaffold_49:443806..447192-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068868 ID=TCONS_00068868|Name=TCONS_00068868|organism=Clytia hemisphaerica|type=transcript|length=3387bp|location=Sequence derived from alignment at scaffold_49:443806..447192- (Clytia hemisphaerica)
AGAACTTACTCAGACTCATATTGTCCCGATGGGATGACACTGGCTTTCTG GATTCGTATTTTACGCGGGGATGAAAACAGAGACGGTTTCATGCTGCTTA TTGGTCAAGGATCTGATGATGATGCTGCTGGTATAGTNTGCGTGGGGATG AAAACAGAGACGGTTTCATGCTGCTTATTGATCAAGGAGCTGGTGATGAT AATGCTGGTATAGCCATTAATGTCAAGCCTGACAAAACAGAAATAAACAT CTACATCAAGCTCCTTAACAACCGATTGAAATGTCAATTTACGAATATTC CCAACGATATTTATCGCCAATGGTTTTTCTTGAGCATGTCTTTCCAAAGA ACGCCTTCAACAAAAATGGTTTGCTTTATGAATGAGGATCGTGTGGAGGT GACAACATACAGTGCAACTACTTCTAGTCCACCCGCGTCTCGATTCTTCG CTGGTGATCGAGGCAAATTCATGTTGGATGATATCCTCTATATTCCCAAG TTTTCGACTGATGAAATTATTTCAACTATTTATGATAAAAGTAAGTTTTT ACGTATTGGTTCTTCCAGAAGCTCTAATTTTCCCGGCTTTATACACCTTT TCGAGCGTAGCCGCCAATTGCTGCGCAGGCATTTTTTTTGTCCGTTTTAC CACCCTAAAACCGTCCCTGTCTTTTTTCGCACCTATAGACAATATAAGAA AAGAAAAAAAAAGGATTGGATCGAGTTTAGGGTGGTAAATTAAATGATAA AGTGGCAAGTGCCTGACCGCTCGACTACGGTTGAAAAGGTGTATTGGGCT GCTCCATTAAAAATTCTTACAGAGGGTTGTACGAACCTTTTTACGTCAAA AAGATTGAAAATGTATGGATACCCTCTGGAAAATGGCAAAGTTTTCAAAA AGACCCTTGGATTAATCCTTTTTCTATATTTCTAAGTGAGGGTGGACGAA CTAAAATCAGTCTGGAACCCCGTGAAAATTTCAAAATAAATCTTTACTCC CTAGAAAAATGAGTAAACACTCTTTAGATGCCCTGCAAATTCTTCTCGAA TTGGAAATGTTCGTCCATCCCCCTGTATGGATATAAAATGGAATGGACCA TTTTTAGATGGTAACATAATAGAAGCCTTATAGACTAGGGCCTGTTTCTT TTTTAGGTTGATGTCTGTCTGTCTAAATTAAAAGTTTTTTTTTTGCCGAA ATTTACCATGAAACATGATTTATTTTTGACGTATCTTTTCACTTTTACAA TTTTCACATGAATTCTCACTTAAGGCAATTTTTCGATTTTACACCAACTT AAATGGCATAATTTTTGCATTTTAAAAAGATTAATGTATAACTTTTCTTA TGTGTGCCTTTTTACCTACCTTTTTAGAATCTAAAAATCTAAAAAATTGA AAATGAAAGAATTAAATAAAGACGAAAACGAAGAGTTTTTCGAAGAAGAG TATTTCACCTTTCAAAGCCCTAATCTCGGTAAAAATCAAACATTTTGGAA TATTTTTTGGTTTAGGTGATGTATCTATTTGAGATGCCTTGGAGTTTTTA CAAGATACTTCACTAATTGGTCATTTAAAGTGATAGAGATGACGCGTTCT TTAGAAAAGTAATAAGATTCTTTTATTACATCTTGACGACCAACCAAATC AAATAAGAGCTTGTAAAAACTCCAGCTTGTCCCATCTATTTAGTATCTAA AAATTCAATTTCGGAAAATTTTTGTGGAAGTATCTTTCCTTTAAAATCTC CAAAAACCTCATTTTTGGCAATTTTGTCCACTAAATTTCCATACGAAAAC AGCTATAACTTGGGATTTAGCCAATAATAGAAAGTTTTTTCGAAAAAATC TACCGTAAATAAAGAAATTATTTTTCATTAACTTAAAAAAAGTTTGAAAC AATAAAATGATTTCCCCAAGGAGATAAGGCTTTTTTTGTGAAAAGTATAT GAATAGCGTCGTTTATGACGTTTTATTAAGATACATGCCACACTTAATCC TTAATTACTCATGATGTAATTACTTAAATTCATTTTTTCAAAAGCAGTTT GTTCTTAAACATGTCAAAGAAGCGAAAACATAAGGTTTTATCCTCAAATT TTGGAGATGCCTTGGAGTTTTTACAAGATACTTCACTAATTGGTCATTTA AAGTGATAGAGATGACGTGTTCTTTAGAAAAAGTAATAAGATTCTTTTAT TACATCTTAACGACCAACCAAATCAAATAAGAGCTTGTAAAAACTCCAGC TTGTCCCAAATTTTGAAATTGATTTTTTACCTACGACCAGAGCCCTTAAC TAGTTTCCACTAGCGAGTACCTCACCAAACACCGGGATTTTTCATCACGT TTCTTAGTGAGTTCCACTTTGACGATTTTCGAAAAATAATAGCCTATCAA GTGTTTTGACGCAAACTCGATTTTTCGATACTGCAGGAGCTTCAATAGCC AGTACCCTCCCACAAAAAAATTTTTTTCTCTGTTTTATTATTTAAATCGC GATGAAAAAAGCGGTTCTCGTCTGACAGGCTAGAGCTTCAAACGTTTAAA GTGACGTCAAAAAAATGGAATGTTTAGAGCCCGAAAACCTGGGCTAAAAA ACATTCGAAAAAATCGCAAAGTGGAATAGACGTTGCCTGTACCAGACGAC CACGGCTTTTTCCTTGACACCTCGATTACAGAAATCGCGTGTTGGGATAT TGATAGGCTAGAATAGACGTTACAGCGTACAAAATGTTGAGACATCTAGT ATAGGCTAAGTTTCTACCGTCTCAACAAAGTCTCATCTTAGGTCGGAAAA CTTTTAGTGTAAAATCCGTACGGGATCCGTTTACATATCTTTTAACGATT TGAAGATATAATCCAAAAAGTATATGTTTCGTGTTTTTTTTAAGGTAACA AATCCTACATTTACGACTACCATATTAAGACACAATCCAATCAGTTCTAG GTCGAATAATCTACAATCATGGTCGTAATATTTTAGAAAAAAGGGAATTT CACACGAATTTTCAAAACCACAAACGATTTGGAAGTGCTCTAGGACCTTA GGATCTGAGGATCCAAAAGTTAAAAATAGTCCAATAAGGCTCAGAATATA GTCTGGAGGAGATGGCCCAAAATCGACTTTCCCGCCCGAACTCCAAATTT CGAAAAAAGAGGAAATAAGATATAAGAAATAAGAAATTTTCAATATATTT TAACCATGATTGTTGATACAATTTTGATACAAGACCAGATTCAAATTTTA TGCATGAATATAGAAAGCACATTCAAGTCTTCATTTTAGAGTTCGATTAT TTGTACTGAGACTTTTTTTATATGGAACCTGTGATTTTTTTAAATCTTCA TTTCAGCCAAATCAAACTAAGCTAACCGGGTTTGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042919XLOC_042919Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068868-exon-scaffold_49-1575043694:446653..447192TCONS_00068868-exon-scaffold_49-1575043694:446653..447192Clytia hemisphaericaexon
TCONS_00068868-exon-scaffold_49-1575043694:443806..443836TCONS_00068868-exon-scaffold_49-1575043694:443806..443836Clytia hemisphaericaexon
TCONS_00068868-exon-scaffold_49-1510915933:446653..447192TCONS_00068868-exon-scaffold_49-1510915933:446653..447192Clytia hemisphaericaexon
TCONS_00068868-exon-scaffold_49-1510915933:443806..443836TCONS_00068868-exon-scaffold_49-1510915933:443806..443836Clytia hemisphaericaexon
TCONS_00068868-exon-scaffold_49-1491911889:446653..447192TCONS_00068868-exon-scaffold_49-1491911889:446653..447192Clytia hemisphaericaexon
TCONS_00068868-exon-scaffold_49-1491911889:443806..443836TCONS_00068868-exon-scaffold_49-1491911889:443806..443836Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:443806..447192 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 1.44071 0 0 0 0 0.351284 0.353881 0 0 0 0.0652707 0 0.283148 0 0 0.106563 0.874919 0.160333 0 0.0123259 3.03478 0 2.32685 0 0.159343 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top