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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068867 ID=TCONS_00068867|Name=TCONS_00068867|organism=Clytia hemisphaerica|type=transcript|length=775bp
AGAACTTACTCAGACTCATATTGTCCCGATGGGATGACACTGGCTTTCTG
GATTCGTATTTTACGCGGGGATGAAAACAGAGACGGTTTCATGCTGCTTA
TTGGTCAAGGATCTGATGATGATGCTGCTGGTATAGTNTGCGTGGGGATG
AAAACAGAGACGGTTTCATGCTGCTTATTGATCAAGGAGCTGGTGATGAT
AATGCTGGTATAGCCATTAATGTCAAGCCTGACAAAACAGAAATAAACAT
CTACATCAAGCTCCTTAACAACCGATTGAAATGTCAATTTACGAATATTC
CCAACGATATTTATCGCCAATGGTTTTTCTTGAGCATGTCTTTCCAAAGA
ACGCCTTCAACAAAAATGGTTTGCTTTATGAATGAGGATCGTGTGGAGGT
GACAACATACAGTGCAACTACTTCTAGTCCACCCGCGTCTCGATTCTTCG
CTGGTGATCGAGGCAAATTCATGTTGGATGATATCCTCTATATTCCCAAG
TTTTCGACTGATGAAATTATTTCAACTATTTATGATAAAAccaaatcaaa
ctAAGCTAACCGGGTTTGACAGGATGGAGGTAATACCTACATAAACTGAC
TGTTGTATACGAAGAAAATGTCTCACGCTAAAAATAAACGCATTTACAAT
CCAATGAGTAACTTTGCGAGTTTTATCGCAGCATCGGCAACTGGCTTACT
TATTGGTGGTACGAAATTACTTGCAATAAACACAACTTTGTTCTAAAGCT
GCACACACCCCTCCAAGCACGACGC Run BLAST on NCBI transcript from alignment at scaffold_49:443205..447192- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068867 ID=TCONS_00068867|Name=TCONS_00068867|organism=Clytia hemisphaerica|type=transcript|length=3988bp|location=Sequence derived from alignment at scaffold_49:443205..447192- (Clytia hemisphaerica)
AGAACTTACTCAGACTCATATTGTCCCGATGGGATGACACTGGCTTTCTG
GATTCGTATTTTACGCGGGGATGAAAACAGAGACGGTTTCATGCTGCTTA
TTGGTCAAGGATCTGATGATGATGCTGCTGGTATAGTNTGCGTGGGGATG
AAAACAGAGACGGTTTCATGCTGCTTATTGATCAAGGAGCTGGTGATGAT
AATGCTGGTATAGCCATTAATGTCAAGCCTGACAAAACAGAAATAAACAT
CTACATCAAGCTCCTTAACAACCGATTGAAATGTCAATTTACGAATATTC
CCAACGATATTTATCGCCAATGGTTTTTCTTGAGCATGTCTTTCCAAAGA
ACGCCTTCAACAAAAATGGTTTGCTTTATGAATGAGGATCGTGTGGAGGT
GACAACATACAGTGCAACTACTTCTAGTCCACCCGCGTCTCGATTCTTCG
CTGGTGATCGAGGCAAATTCATGTTGGATGATATCCTCTATATTCCCAAG
TTTTCGACTGATGAAATTATTTCAACTATTTATGATAAAAGTAAGTTTTT
ACGTATTGGTTCTTCCAGAAGCTCTAATTTTCCCGGCTTTATACACCTTT
TCGAGCGTAGCCGCCAATTGCTGCGCAGGCATTTTTTTTGTCCGTTTTAC
CACCCTAAAACCGTCCCTGTCTTTTTTCGCACCTATAGACAATATAAGAA
AAGAAAAAAAAAGGATTGGATCGAGTTTAGGGTGGTAAATTAAATGATAA
AGTGGCAAGTGCCTGACCGCTCGACTACGGTTGAAAAGGTGTATTGGGCT
GCTCCATTAAAAATTCTTACAGAGGGTTGTACGAACCTTTTTACGTCAAA
AAGATTGAAAATGTATGGATACCCTCTGGAAAATGGCAAAGTTTTCAAAA
AGACCCTTGGATTAATCCTTTTTCTATATTTCTAAGTGAGGGTGGACGAA
CTAAAATCAGTCTGGAACCCCGTGAAAATTTCAAAATAAATCTTTACTCC
CTAGAAAAATGAGTAAACACTCTTTAGATGCCCTGCAAATTCTTCTCGAA
TTGGAAATGTTCGTCCATCCCCCTGTATGGATATAAAATGGAATGGACCA
TTTTTAGATGGTAACATAATAGAAGCCTTATAGACTAGGGCCTGTTTCTT
TTTTAGGTTGATGTCTGTCTGTCTAAATTAAAAGTTTTTTTTTTGCCGAA
ATTTACCATGAAACATGATTTATTTTTGACGTATCTTTTCACTTTTACAA
TTTTCACATGAATTCTCACTTAAGGCAATTTTTCGATTTTACACCAACTT
AAATGGCATAATTTTTGCATTTTAAAAAGATTAATGTATAACTTTTCTTA
TGTGTGCCTTTTTACCTACCTTTTTAGAATCTAAAAATCTAAAAAATTGA
AAATGAAAGAATTAAATAAAGACGAAAACGAAGAGTTTTTCGAAGAAGAG
TATTTCACCTTTCAAAGCCCTAATCTCGGTAAAAATCAAACATTTTGGAA
TATTTTTTGGTTTAGGTGATGTATCTATTTGAGATGCCTTGGAGTTTTTA
CAAGATACTTCACTAATTGGTCATTTAAAGTGATAGAGATGACGCGTTCT
TTAGAAAAGTAATAAGATTCTTTTATTACATCTTGACGACCAACCAAATC
AAATAAGAGCTTGTAAAAACTCCAGCTTGTCCCATCTATTTAGTATCTAA
AAATTCAATTTCGGAAAATTTTTGTGGAAGTATCTTTCCTTTAAAATCTC
CAAAAACCTCATTTTTGGCAATTTTGTCCACTAAATTTCCATACGAAAAC
AGCTATAACTTGGGATTTAGCCAATAATAGAAAGTTTTTTCGAAAAAATC
TACCGTAAATAAAGAAATTATTTTTCATTAACTTAAAAAAAGTTTGAAAC
AATAAAATGATTTCCCCAAGGAGATAAGGCTTTTTTTGTGAAAAGTATAT
GAATAGCGTCGTTTATGACGTTTTATTAAGATACATGCCACACTTAATCC
TTAATTACTCATGATGTAATTACTTAAATTCATTTTTTCAAAAGCAGTTT
GTTCTTAAACATGTCAAAGAAGCGAAAACATAAGGTTTTATCCTCAAATT
TTGGAGATGCCTTGGAGTTTTTACAAGATACTTCACTAATTGGTCATTTA
AAGTGATAGAGATGACGTGTTCTTTAGAAAAAGTAATAAGATTCTTTTAT
TACATCTTAACGACCAACCAAATCAAATAAGAGCTTGTAAAAACTCCAGC
TTGTCCCAAATTTTGAAATTGATTTTTTACCTACGACCAGAGCCCTTAAC
TAGTTTCCACTAGCGAGTACCTCACCAAACACCGGGATTTTTCATCACGT
TTCTTAGTGAGTTCCACTTTGACGATTTTCGAAAAATAATAGCCTATCAA
GTGTTTTGACGCAAACTCGATTTTTCGATACTGCAGGAGCTTCAATAGCC
AGTACCCTCCCACAAAAAAATTTTTTTCTCTGTTTTATTATTTAAATCGC
GATGAAAAAAGCGGTTCTCGTCTGACAGGCTAGAGCTTCAAACGTTTAAA
GTGACGTCAAAAAAATGGAATGTTTAGAGCCCGAAAACCTGGGCTAAAAA
ACATTCGAAAAAATCGCAAAGTGGAATAGACGTTGCCTGTACCAGACGAC
CACGGCTTTTTCCTTGACACCTCGATTACAGAAATCGCGTGTTGGGATAT
TGATAGGCTAGAATAGACGTTACAGCGTACAAAATGTTGAGACATCTAGT
ATAGGCTAAGTTTCTACCGTCTCAACAAAGTCTCATCTTAGGTCGGAAAA
CTTTTAGTGTAAAATCCGTACGGGATCCGTTTACATATCTTTTAACGATT
TGAAGATATAATCCAAAAAGTATATGTTTCGTGTTTTTTTTAAGGTAACA
AATCCTACATTTACGACTACCATATTAAGACACAATCCAATCAGTTCTAG
GTCGAATAATCTACAATCATGGTCGTAATATTTTAGAAAAAAGGGAATTT
CACACGAATTTTCAAAACCACAAACGATTTGGAAGTGCTCTAGGACCTTA
GGATCTGAGGATCCAAAAGTTAAAAATAGTCCAATAAGGCTCAGAATATA
GTCTGGAGGAGATGGCCCAAAATCGACTTTCCCGCCCGAACTCCAAATTT
CGAAAAAAGAGGAAATAAGATATAAGAAATAAGAAATTTTCAATATATTT
TAACCATGATTGTTGATACAATTTTGATACAAGACCAGATTCAAATTTTA
TGCATGAATATAGAAAGCACATTCAAGTCTTCATTTTAGAGTTCGATTAT
TTGTACTGAGACTTTTTTTATATGGAACCTGTGATTTTTTTAAATCTTCA
TTTCAGCCAAATCAAACTAAGCTAACCGGGTTTGACAGGATGGAGTTAAT
ACCTACGNTTAAATCTTCATTTCAGCCAAATCAAACTAAGCTAACCGGGT
TTGACAGGATGGAGGTAATACCTACATAAACTGACTGTTGTATACGAAGA
AAATGTCTCACGCTAAAAATAAACGCATTTACAATCCAATGAGTAACTTT
GCGAGTTTTATCGCAGCATCGGCAACTGGCTTACTTATTGGTGGTACGAA
ATTACTTGCAATAAACACAACTTTGTTCTAAAGTTATAATCTAACTATAG
GTAGTACTTCAAATGTAATTAGTTCACTTTTTAAATCACTCAAATGATTG
TGGAAATCCTTTACTTCGAATGTCTCCTTAATTCGAACAAGTTTAAGTTA
CCTTCAGATAAGAATGCCTTATAAGCCTTATTCCATAACTCGAAATTTCC
TTAACTCGAACAAATTATTTTTGTGTTCATCGTGAGTTATAGAGACTCCA
TTGTATTGTTTTTTGATAGAGCAACCAACAGCTACAAAAGGGCCTTAAAA
TCTGGTGCACAAATTACGATTCCACTTTTTCTATTTAATTTTTTAATTTT
ATCGCACTAGGCTGCACACACCCCTCCAAGCACGACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068867-exon-scaffold_49-1575043694:446653..447192 | TCONS_00068867-exon-scaffold_49-1575043694:446653..447192 | Clytia hemisphaerica | exon |
| TCONS_00068867-exon-scaffold_49-1575043694:443561..443767 | TCONS_00068867-exon-scaffold_49-1575043694:443561..443767 | Clytia hemisphaerica | exon |
| TCONS_00068867-exon-scaffold_49-1575043694:443205..443232 | TCONS_00068867-exon-scaffold_49-1575043694:443205..443232 | Clytia hemisphaerica | exon |
| TCONS_00068867-exon-scaffold_49-1510915933:446653..447192 | TCONS_00068867-exon-scaffold_49-1510915933:446653..447192 | Clytia hemisphaerica | exon |
| TCONS_00068867-exon-scaffold_49-1510915933:443561..443767 | TCONS_00068867-exon-scaffold_49-1510915933:443561..443767 | Clytia hemisphaerica | exon |
| TCONS_00068867-exon-scaffold_49-1510915933:443205..443232 | TCONS_00068867-exon-scaffold_49-1510915933:443205..443232 | Clytia hemisphaerica | exon |
| TCONS_00068867-exon-scaffold_49-1491911889:446653..447192 | TCONS_00068867-exon-scaffold_49-1491911889:446653..447192 | Clytia hemisphaerica | exon |
| TCONS_00068867-exon-scaffold_49-1491911889:443561..443767 | TCONS_00068867-exon-scaffold_49-1491911889:443561..443767 | Clytia hemisphaerica | exon |
| TCONS_00068867-exon-scaffold_49-1491911889:443205..443232 | TCONS_00068867-exon-scaffold_49-1491911889:443205..443232 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:443205..447192 - |
Blast
The following BLAST results are available for this feature:
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