TCONS_00068837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068837
Unique NameTCONS_00068837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068837 ID=TCONS_00068837|Name=TCONS_00068837|organism=Clytia hemisphaerica|type=transcript|length=3553bp
CCGATAAAACCTCTTTCAGCAACACGAatgcaatcaaaacaaaaatctgc
aTCTTCTTCCcaaaacaaaaaactgaaatcCAAACGAAACTGTAATCAAA
CAAAATACTTCTGATtatgaaaagtaaatttttttgattcatcAACGTAC
ATCAAATTAATCTTGTTTGCTATTTGCCCAGAAGACAATGGAGAGCGGTT
TTCACACAAGCAGCATTTGTCAGCCCCTTTCTCACCACCATCATAATCAT
AAAATGAATACCAAACGCTTTTAAAGATTTGATTGATGTGTCTAAAATAA
GATGAAAGCAATCACACCAGTCTTTACGTTTTGCCAGTCAAGTAAGAATT
CTCTGTGACGTGGAAGATGTTGCGCCAACTTTTATCAAAGAAAGTAAGGA
AACAAAATATCCAGTCCCTTTTGTAAAATAAGTGTTTCAAAAGATTGTTT
GATATATTTTTAAGGAGAAAATTTCATTCAataatttttgagaatattAA
AACCCCATCGagagtaaaatcaaaacaaagaacaaaAGATAGAGACAAGA
AAGTTAAAACAAATTGGATATCCTTCCAAAGCCTCATCTACTTTGACccc
aaatttctttgttttcaaagttGCGGTGAGAATACATACACAAAAAGTAA
TTCTATGTGAATAGAGAATTTTTCATGTTTGATAAAAGTTGACGTCAGTA
GAAAGGAGACGATAATTTAAAATACATTGCTGGACATCTACATCTGGAGA
GAGAGAACACTAAATTTTATCAACAATATTTTCatcaagttttatttcaa
acatTAACATAATTTACTTcacacttttaaaatttttgatcaaAGATATC
ATCATTGTGTTATAGAAGTCACAGTTTTCAACTTCCAAAACATATTCCTT
CGTGGAATAAGTAACTCTGTTCAATTTTTATCTAACCTTTCCAAATTTGA
AGTCGAAAATGAAGATTGCAAAATGAAGAAGGAAATTACCTTTGTCTTTA
TTATAGTGGTGTTACTGGATGTTGTCAGTTGCAATGATGCAGAACTGAGG
CTGTTTGAGAAATTATTCACAGGCTATAACAACAAAGTGAGACCCATCAA
TGACAAATCAAAACCAGTCAACACAACCCTGGATATTGCTTACGTACAGC
TTGTCCAACTGGATGATCGAGAACAAACTTTGATCAGCAACGTCTGGGTG
CGTCAGAACTGGCAGAATGACAAATTGACGTGGGATCCGAAGGACTTTGA
TAACATCACCGTCATTAATGTTCATCCGTCAAAAGTTTGGCTGCCGGACG
TCATTCTTTATAACAAcGCGAAGAGTGGCGTGGGAGCAGGCATGATGTAT
CGTTTCAAGACCAAAGTCTCCATTTTTCACAACGGACTTAACAAATGGTA
CGCTCCAGCCATCGTTCGGAGCAGTTGTAGTATTGACATCAAAAACTTCC
CTTTCGACGAACAAAAATGTGACCTGGAGTTCGGTAGTTGGACGTATAAT
GGATATGAATTGGATTTGTTCTACGCCAATGACAAAGCTGACACTTCTTT
CTATTTGGCAAGCGctgaatttgatttgatttcagCCAAAGCCAAGCGAT
TCGTCAAAAGATACGAATGTTGTCCAGAACCATACCCGAATATCATCTAC
ACAGTGCACGTGCGTCGCCAACCTGGTTTCTTTCTCTTCAACGTCATCAT
CCCTAGCATGGTTATCACCTTCTTTGCTATTCTCACTTTCTCCTCCCCTC
CCAACGTCGGAGAGCGCATCTCCCTGGCTATCGAATCTTTCCTGTCCTTG
AGTTTCTTGTGTATGATGGTAGCGGACAGTATACCGGTCAATTCGGATGT
GTCTCCCCTCATCACCAACTTCTTGATGGTGTGTATGATGCTCATCTCCT
TGGCACTAGTTTTTAACATGATCTCCATGAACCTGACTGGCACCAAACCC
GTACCACGATGGTTACATACATTGGCTTTTGTCTACATTGGACCACTTGT
TGGTTATTGCCGAGATACAAATGCCACCACCAACAGTCTTGGACGATTCT
TTTCATCACGCGTGCCAAGTAAAATCGAAAATAAAGTCAGGTTTATGATT
CACAAGTTGCATACTCAGTTATccgagaaaaaattgtattacgGAGAGAA
AATGTTGCGCCACCTTTGCCGTTCAGAACATTGCATGCCACAAAACAGGG
AGGAGGGTCTTCACGAAGAGGAGAGACAAAACATGCGACAAATCTTGAAA
CGCTCCTCCGTAGAGAACAATCAAAAGTTCAACCGTGATTTCTGGCGATG
TATCGCACAAACTGTGGATCGTGTTTGCGTTGTCAGCTTCTCGACCAGTT
TCTTGTTCGTCTCTGCCGCTGTCCTCATGAAGGGGTATGGACACCAatta
gaattacaaaaataaaacaataacatCTNCCAGCCATCGTTCGGAGCAGT
TGTAGTATTGACATCAAAAACTTCCCTTTCGACGAACAAAAATGTGACCT
GGAGTTCGGTAGTTGGACGTATAATGGATATGAATTGGATTTGTTCTACG
CCAATGACAAAGCTGACACTTCTTTCTATTTGGCAAGCGctgaatttgat
ttgatttcagCCAAAGCCAAGCGATTCGTCAAAAGATACGAATGTTGTCC
AGAACCATACCCGAATATCATCTACACAGTGCACGTGCGTCGCCAACCTG
GTTTCTTTCTCTTCAACGTCATCATCCCTAGCATGGTTATCACCTTCTTT
GCTATTCTCACTTTCTCCTCTCCTCCCAACGTCGGAGAGCGCATCTCCCT
GGCTATCGAATCTTTCCTGTCTTTGAGTTTCTTGTGTATGATGGTAGCGG
ACAGTATACCGGTCAATTCGGATGTGTCTCCCCTCATCACCAACTTCTTG
ATGGTGTGTATGATGCTCATCTCCTTGGCACTAGTTTTTAACATGATCTC
CATGAACCTGACTGGCACCAAACCCGTACCACGATGGTTACATACATTGG
CTTTTGTCTACATTGGACCACTTGTTGGTTATTGCCGAGATACAAATGCC
ACCACCAACAGTCTTGGACGATTCTTTTCATCACGCGTGCCAAGTAAAAT
CGAAAATAAAGTCAGGTTTATGATTCACAAGTTGCATACTCAGTTATccg
agaaaaaattgtattacgGAGAGAAAATGTTGCGCCACCTTTGCCGTTCA
GAACATTGCATGCCACAAAACAGGGAGGAGGTTCTTCACGAAGAGGAGAG
ACAAAATATGCGACAAATCTTGAAACGCTCCTCCGTAGAGAACAATCAAA
AGTTCAACCGTGATTTCTGGCGATGCATCGCACAAACTGTGGATCGTGTT
TGCGTTGTCAGCTTCTCGACCAGTTTCTTGTTCGTCTCTGCCGCTGTCCT
CATGAAGGGGTATGGACACCAattagaattacaaaaataaaacaataaca
tCTCacttataattatttttatcgTAAATACATTTGGTCAATTCCTTTAC
CGACCTATTAACAATTGAGTTTAACTAAAGAGAAATACGTAAACATACCT
CAA
Run BLAST on NCBI

transcript from alignment at scaffold_49:168482..176121-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068837 ID=TCONS_00068837|Name=TCONS_00068837|organism=Clytia hemisphaerica|type=transcript|length=7640bp|location=Sequence derived from alignment at scaffold_49:168482..176121- (Clytia hemisphaerica)
CCGATAAAACCTCTTTCAGCAACACGAATGCAATCAAAACAAAAATCTGC ATCTTCTTCCCAAAACAAAAAACTGAAATCCAAACGAAACTGTAATCAAA CAAAATACTTCTGATTATGAAAAGTAAATTTTTTTGATTCATCAACGTAC ATCAAATTAATCTTGTTTGCTATTTGCCCAGAAGACAATGGAGAGCGGTT TTCACACAAGCAGCATTTGTCAGCCCCTTTCTCACCACCATCATAATCAT AAAATGAATACCAAACGCTTTTAAAGATTTGATTGATGTGTCTAAAATAA GATGAAAGCAATCACACCAGTCTTTACGTTTTGCCAGTCAAGTAAGAATT CTCTGTGACGTGGAAGATGTTGCGCCAACTTTTATCAAAGAAAGTAAGGA AACAAAATATCCAGTCCCTTTTGTAAAATAAGTGTTTCAAAAGATTGTTT GATATATTTTTAAGGAGAAAATTTCATTCAATAATTTTTGAGAATATTAA AACCCCATCGAGAGTAAAATCAAAACAAAGAACAAAAGATAGAGACAAGA AAGTTAAAACAAATTGGATATCCTTCCAAAGCCTCATCTACTTTGACCCC AAATTTCTTTGTTTTCAAAGTTGCGGTGAGAATACATACACAAAAAGTAA TTCTATGTGAATAGAGAATTTTTCATGTTTGATAAAAGTTGACGTCAGTA GAAAGGAGACGATAATTTAAAATACATTGCTGGACATCTACATCTGGAGA GAGAGAACACTAAATTTTATCAACAATATTTTCATCAAGTTTTATTTCAA ACATTAACATAATTTACTTCACACTTTTAAAATTTTTGATCAAAGATATC ATCATTGTGTTATAGAAGTCACAGTTTTCAACTTCCAAAACATATTCCTT CGTGGAATAAGTAACTCTGTTCAATTTTTATCTAACCTTTCCAAGTAAGC TATCATTTATTCATTCTCTTACTCAACTTCTATTTGAATGGTTTCAACTC ACCAACACCCTGCTGTGGAATGTCTTAAAACCAATTCAATCTTTCTGACA AGCTGGTCGACGCTTTCTCCGTCAATTGAAAATTATTTTGCACAGAAACT GAAAAAGTCAACAGAAATAGGAAATAATTTCATTGATTTCCGACTTTTGA AAGTTTTGAAAACATCACAAGATTTTTAAAATGGTGTCGCTAAAAAATTT GAGTAGAAACTCTTCCTCAATTTGACATAACAAAGGTCTTCAACTTTTCA TGAAAAGCGAAAGCACGAGGGGCAGTATTTCATGGGAAAAACAAGAATTT TAAGTAGTCTTCTTTTTCTCCTTTCAGATTTGAAGTCGAAAATGAAGATT GCAAAATGAAGAAGGAAATTACCTTTGTCTTTATTATAGGTAAGTATCAC CTGTCAGTATTTCATATCTGTTATCTTTAGCATTTCGAAGAGTCATGTTT CCTTTAAACTTTTCAGCGCTTTTCTTTCAGTGGTGTTACTGGATGTTGTC AGGTGCAATGATGCAGAACTGAGGCTGTTTGAGAAATTATTCACAGGCTA TAACAACAAAGTGAGACCCATCAATGACAAATCGAAACCAGTCAACACAA CCCTGGATATTGCTTACGTACAGCTTGTCCAACTGGTAAGTGCTCTCATG TAACACGTTTTTTTATAAGCACATCCAAATTTTTTTAAGNAGAACAAAAG ATAGAGACAAGAAAGTTAAAACAAATTGGATATCCTTCCAAAGCCTCATC TACTTTGACCCCAAATTTCTTTGTTTTCAAAGTTGCGGTGAGAATACATA CACAAAAAGTAATTCTATGTGAATAGAGAATTTTTCATGTTTGATAAAAG TTGACGTCAGTAGAAAGGAGACGATAATTTAAAATACATTGCTGGACATC TACATCTGGAGAGAGAGAACACTAAATTTTATCAACAATATTTTCATCAA GTTTTATTTCAAACATTAACATAGTTACTTCACACTTTTAAAATTTTTGA TCAACGATATCATCATTGTGTTATAGAGGTCACAGTTTTCAACTTCCAAA ACATATTCCTTCGTGGAATAAGTAACTCTGTTCAATTTTTATCTAACCTT TCCAAGTAAGCTATCATTTATTCATTCTCTTAATCAACTTCTATTTGAAT AGTTTCAACTCACCAACACCCTGCTGTGGAATGTCTTAAAACCAATTCAA TCTTTCTGACAAGCTGGTCGACGCTTTCTCCGTCAATTGAAAATTATTTT GCACAGAAACTGAAAAAGTCAACAGAAATAGGAAATAATTTCATTGATTT CCGACTTTTGAAAGTTTTGAAAACATCACAAGATTTTTAAAATGGTGTCG CTAAAAAATTTGAGTAGAAACTCTTCCTCAATTTGACATAACAAAGGTCT TCAACTTTTCATGAAAAACGAAAGCACGAGGGGCAGTATTTCATGGGAAA AACATTCGCAAATAAAAATAATTTTAAGTAGTCTTCTTTTTCTCCTTTCA GATTTGAAGTCGAAAATGAAGATTGCAAAATGAAGAAGGAAATTACCTTT GTCTTTATTATAGGTAAGTATCACCTGTCAGTATTTCATATCTGTTATCT TTAGCATTTCGAAGAGTCATGTTTCCTTTAAACTTTTCAGCGCTTTTCTT TCAGTGGTGTTACTGGATGTTGTCAGTTGCAATGATGCAGAACTGAGGCT GTTTGAGAAATTATTCACAGGCTATAACAACAAAGTGAGACCCATCAATG ACAAATCAAAACCAGTCAACACAACCCTGGATATTGCTTACGTACAGCTT GTCCAACTGGTAAGTGCTCTCATGTAACACGTTTTTTTATAAGCACATCT AATTTTTTTTAAAGCCTTCGGATGTTCTTAAATTTTTAAGTTTCGAGCCT AAAAATGTTCTTAACATGTTCTTATTTCAACCAATTTTTGACCATTTTTA CCCATTTTCCTAAGAAATCGAGTGTTTTTGAGACCATAAAGCCTTAAATA GTTCCTATCTCGTTTTTAACATTTTGGCCGTCGAAGCCTTATGTTCTTAT ATAGTTTGTTCTTATAAAGAAAAAGGGTAACACCCCTGTGTCACCCACTG GGTCCCAACCCCACTGAAAGATTTGGCCAAAATTTCGTCTGTGGGAAAAA TGTCTTCCAATTTCATATCAGTCCCATTGGGAAATTGACTTTGATTTCAT CCCCATTTGAAATTCAATGTTTAGAAATTGCACTCCAAAACTATCCCCCT AGATTTTTCAAGCTTGGAGCAATAGAATTGTAGCCCCATTGGGATTTTGG TTAAAATTTTTATCCCTGNCTCCAAAACTATCCCCCTAGATTTTTCAAGC CTGGAGCAATAGAATTGTAGTTTTGGTTAAAATTTTTATCCCTGATGTGG GAAAAGGTTTCACCGGTACTGTGAGACAGGGATTTCACATGTAGGTTGTA AACGGCCCTATCAGGAAAAATATTAACCGCTCAAGAAGTCATGGATGCTT TCAAATAGGGCATGCAAAACAGTGCACTAAGATGTAAAAGTATGAAACAG TTTGGTCTAAACCTCAAGGCAAAAGAGTTAGCACCTGATATTGTATTTTA CAGACCGAAACAGACTTCTAATAAAACCTAAAATCAATTTTTTTTCTCCA AAGTATGCATACATATTGTTAGAAATCATTTTAAACTGATTCAGAAAAAT ATTACAACCTATTTCTGAAAATAAATTCATTCTAATAAATATTGAAAAAG TCTCATTTTACCTGAAAACATCTGAAAACTGAAAACATCGGTTGAAGTTA AAACATTACGGGCTTCATAAAGAATTTGTTCATACCATTTTCGATTCATG ATAAATCCAAGATCACAAAGTCCAATATTTCTAACAATTCTGTATTCGAG TTAAGTTGACTAAATAATTGTCCTTCTTTTTCCTTAGGATGATCGAGAAC AAACTTTGATCAGCAACGTCTGGGTGCGTCAGGTATGTCTTCCATAGTCT ACTTGAAATCGATATAAAACATATCTAACATTATCACCAACAACAAATTT TGAAAAGTTTCTTAAACTTGTGATTTCAGCACCATGGTAAAGTACCCTTA ACACACCCTTTTATTACAGTCCCGCACTGGAGAATTTTGGCCAAAATTTC TTTCCCGGTGGAAAAAATACCCTGCAATTTCACCCCTGGCAAATTGACTT TGATTTCACCACCTGGCAAATTGACTTTGATTTCATCCCCATTCGAAGTT TCAATTGAAAAAATTGCACCCAAAAACTATCTCTACTGGTTTTCTAAGCT GAGAATGATAGAAAATGTTTACCCACCCCCTTGTAGAAAACCGGGGCTGC GAGACAGGGGTGTATTAACTTCGGTTGAAAAAATACTAGACTCTAATTTA ATCAAATTGTTTATTTCCGAAAAAATATGGATCAAAGCCTTTTTAAATAA AGTTTTTTTAAATTCTTGATTGTCATTTCTTTGCGCAGAACTGGCAGAAT GACAAATTGACGTGGGATCCGAAGGACTTTGATAACATCACCGTCATTAA TGTTCATCCGTCAAAAGTTTGGCTGCCGGACGTCATTCTTTATAACAAGT ATCCGTCATTTTTTTCTTCAAAACCCTTTTTTAAAGTACAAATATGAGAA ATAAAATATGTTAGACTCGTTACTTTCGAGGATCTCCTCAAAAACAGCGG TAGAGGAGCAGAAAAAAAAACCACTAGCATAATTACCTTCTTAAGACACT ATTATTTCTTCATTTTTGTTTTTCAGCGCGAAGAGTGGCGTGGGAGCAGG CATGATGTATCGTTTCAAGACCAAAGTCTCCATTTTTCACAACGGACTTA ACAAATGGTATGGAATTAACTATTCATATGAAGAATGTCAAAATGATACT TGCTCGGAAGAATAATAATACTTCCTGACATTATGCAATTCCCCCATCTT TTTTCCAGGTACGCTCCAGCCATCGTTCGGAGCAGTTGTAGTATTGACAT CAAAAACTTCCCTTTCGACGAACAAAAATGTGACCTGGAGTTCGGTAGTT GGACGTATAATGGATATGAATTGGATTTGTTCTACGCCAATGACAAAGCT GACACTTCTTTCTATTTGGCAAGCGCTGAATTTGATTTGATTTCAGCCAA AGCCAAGCGATTCGTCAAAAGATACGAGTAAGAATCATTCCTTATTTAGA AAGAGTAAGCCTGGCCCGCAAATTCCTTCCTACCTTCTTCTATATAAAAA GCCTCAATTTTCATAGTACGAAGGACTTAGAAGATTTAGAACTTCTGTTC ATAAAGATTTCGAAATTCTTTGAGCTGAATATGGTTAAGCTTATTAAAAG ATCTTCCAAAAGATAAAAAAAAGCGAAGGCGCGCGTTGGCGAAGAGGGTC AACGGAAGGCTTATCTTGGCGTCTTTTCTATCTCTTTCAGATGTTGTCCA GAACCATACCCGAATATCATCTACACAGTGCACGTGCGTCGCCAACCTGG TTTCTTTCTCTTCAACGTCATCATCCCTAGCATGGTTATCACCTTCTTTG CTATTCTCACTTTCTCCTCCCCTCCCAACGTCGGAGAGCGCATCTCCCTG GCTATCGAATCTTTCCTGTCCTTGAGTTTCTTGTGTATGATGGTAGCGGA CAGTATACCGGTCAATTCGGATGTGTCTCCCCTCATCACCAACTTCTTGA TGGTGTGTATGATGCTCATCTCCTTGGCACTAGTTTTTAACATGATCTCC ATGAACCTGACTGGCACCAAACCCGTACCACGATGGTTACATACATTGGC TTTTGTCTACATTGGACCACTTGTTGGTTATTGCCGAGATACAAATGCCA CCACCAACAGTCTTGGACGATTCTTTTCATCACGCGTGCCAAGTAAAATC GAAAATAAAGTCAGGTTTATGATTCACAAGTTGCATACTCAGTTATCCGA GAAAAAATTGTATTACGGAGAGAAAATGTTGCGCCACCTTTGCCGTTCAG AACATTGCATGCCACAAAACAGGGAGGAGGGTCTTCACGAAGAGGAGAGA CAAAACATGCGACAAATCTTGAAACGCTCCTCCGTAGAGAACAATCAAAA GTTCAACCGTGATTTCTGGCGATGTATCGCACAAACTGTGGATCGTGTTT GCGTTGTCAGCTTCTCGACCAGTTTCTTGTTCGTCTCTGCCGCTGTCCTC ATGAAGGGGTATGGACACCAATTAGAATTACAAAAATAAAACAATAACAT CTNCCAGCCATCGTTCGGAGCAGTTGTAGTATTGACATCAAAAACTTCCC TTTCGACGAACAAAAATGTGACCTGGAGTTCGGTAGTTGGACGTATAATG GATATGAATTGGATTTGTTCTACGCCAATGACAAAGCTGACACTTCTTTC TATTTGGCAAGCGCTGAATTTGATTTGATTTCAGCCAAAGCCAAGCGATT CGTCAAAAGATACGAGTAAGAATCATTCCTTATTTAGAAAGAGTAAGCCT GGCCCGCAAATTCCTTCCTACCTTCTTCTATATAAAAAGCCTCAATTTTC ATAGTACGAAGGACTTAGAAGATTTAGAACTTCTGTTCATAAAGATTTCG AAATTCTTTGAGCTGAATATGGTTAAGCTTATTAAAAGATCTTCCAAAAG ATAAAAAAAAGCGAAGGCACGCGTAGGCGAAGAGGGTCAACGGAAGGCTT ATCTTGGCGTCTTTTCCATCTCTTTCAGATGTTGTCCAGAACCATACCCG AATATCATCTACACAGTGCACGTGCGTCGCCAACCTGGTTTCTTTCTCTT CAACGTCATCATCCCTAGCATGGTTATCACCTTCTTTGCTATTCTCACTT TCTCCTCTCCTCCCAACGTCGGAGAGCGCATCTCCCTGGCTATCGAATCT TTCCTGTCTTTGAGTTTCTTGTGTATGATGGTAGCGGACAGTATACCGGT CAATTCGGATGTGTCTCCCCTCATCACCAACTTCTTGATGGTGTGTATGA TGCTCATCTCCTTGGCACTAGTTTTTAACATGATCTCCATGAACCTGACT GGCACCAAACCCGTACCACGATGGTTACATACATTGGCTTTTGTCTACAT TGGACCACTTGTTGGTTATTGCCGAGATACAAATGCCACCACCAACAGTC TTGGACGATTCTTTTCATCACGCGTGCCAAGTAAAATCGAAAATAAAGTC AGGTTTATGATTCACAAGTTGCATACTCAGTTATCCGAGAAAAAATTGTA TTACGGAGAGAAAATGTTGCGCCACCTTTGCCGTTCAGAACATTGCATGC CACAAAACAGGGAGGAGGTTCTTCACGAAGAGGAGAGACAAAATATGCGA CAAATCTTGAAACGCTCCTCCGTAGAGAACAATCAAAAGTTCAACCGTGA TTTCTGGCGATGCATCGCACAAACTGTGGATCGTGTTTGCGTTGTCAGCT TCTCGACCAGTTTCTTGTTCGTCTCTGCCGCTGTCCTCATGAAGGGGTAT GGACACCAATTAGAATTACAAAAATAAAACAATAACATCTCACTTATAAT TATTTTTATCGTAAATACATTTGGTCAATTCCTTTACCGACCTATTAACA ATTGAGTTTAACTAAAGAGAAATACGTAAACATACCTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042913XLOC_042913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068837-exon-scaffold_49-1575043694:175178..176121TCONS_00068837-exon-scaffold_49-1575043694:175178..176121Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1575043694:174733..174794TCONS_00068837-exon-scaffold_49-1575043694:174733..174794Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1575043694:173313..173467TCONS_00068837-exon-scaffold_49-1575043694:173313..173467Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1575043694:172140..172184TCONS_00068837-exon-scaffold_49-1575043694:172140..172184Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1575043694:171524..171633TCONS_00068837-exon-scaffold_49-1575043694:171524..171633Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1575043694:171265..171345TCONS_00068837-exon-scaffold_49-1575043694:171265..171345Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1575043694:170945..171163TCONS_00068837-exon-scaffold_49-1575043694:170945..171163Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1575043694:169657..170681TCONS_00068837-exon-scaffold_49-1575043694:169657..170681Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1575043694:168482..169393TCONS_00068837-exon-scaffold_49-1575043694:168482..169393Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1510915933:175178..176121TCONS_00068837-exon-scaffold_49-1510915933:175178..176121Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1510915933:174733..174794TCONS_00068837-exon-scaffold_49-1510915933:174733..174794Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1510915933:173313..173467TCONS_00068837-exon-scaffold_49-1510915933:173313..173467Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1510915933:172140..172184TCONS_00068837-exon-scaffold_49-1510915933:172140..172184Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1510915933:171524..171633TCONS_00068837-exon-scaffold_49-1510915933:171524..171633Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1510915933:171265..171345TCONS_00068837-exon-scaffold_49-1510915933:171265..171345Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1510915933:170945..171163TCONS_00068837-exon-scaffold_49-1510915933:170945..171163Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1510915933:169657..170681TCONS_00068837-exon-scaffold_49-1510915933:169657..170681Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1510915933:168482..169393TCONS_00068837-exon-scaffold_49-1510915933:168482..169393Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1491911889:175178..176121TCONS_00068837-exon-scaffold_49-1491911889:175178..176121Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1491911889:174733..174794TCONS_00068837-exon-scaffold_49-1491911889:174733..174794Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1491911889:173313..173467TCONS_00068837-exon-scaffold_49-1491911889:173313..173467Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1491911889:172140..172184TCONS_00068837-exon-scaffold_49-1491911889:172140..172184Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1491911889:171524..171633TCONS_00068837-exon-scaffold_49-1491911889:171524..171633Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1491911889:171265..171345TCONS_00068837-exon-scaffold_49-1491911889:171265..171345Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1491911889:170945..171163TCONS_00068837-exon-scaffold_49-1491911889:170945..171163Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1491911889:169657..170681TCONS_00068837-exon-scaffold_49-1491911889:169657..170681Clytia hemisphaericaexon
TCONS_00068837-exon-scaffold_49-1491911889:168482..169393TCONS_00068837-exon-scaffold_49-1491911889:168482..169393Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:168482..176121 -
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00068837 vs. Swiss-Prot (Human)
Match: ACHA6 (Neuronal acetylcholine receptor subunit alpha-6 OS=Homo sapiens GN=CHRNA6 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 6.381e-76
Identity = 147/440 (33.41%), Postives = 234/440 (53.18%), Query Frame = 1
Query: 1039 AELRLFEKLFTGYNNKVRPINDKSKPVNTTLDIAYVQLVQLDDREQTLISNVWVRQNWQNDKLTWDPKDFDNITVINVHPSKVWLPDVILYNNAKSGVGAGMMYRFKTKVSIFHNGLNKWYAPAIVRSSCSIDIKNFPFDEQKCDLEFGSWTYNGYELDLFYANDKADTSFYLASAEFDLISAKAKRFVKRYECCPEPYPNIIYTVHVRRQPGFFLFNVIIPSMVITFFAILTFSSPPNVGERISLAIESFLSLSFLCMMVADSIPVNSDVSPLITNFLMVCMMLISLALVFNMISMNLTGTKP----VPRWLHTLAFVYIGPLVGYCRDTNATTNSLGRFFSSRVPSKIENKVRFMIHKLHTQLSE-------KKLYYGEKMLRHLCRSEHCMPQNREEGLHEEERQNMRQILKRSSVENNQ-KFNRDFWRCIAQTVDR 2322
             E RLF KLF+ YN  +RP+ + S PV    ++A  QL  +D+  Q + +N+W+R  W + KL WDP ++D I  + V   K+W PD++LYNNA   VG       KTK  + +NG+  W  PAI +SSC +DI  FPFD Q C L+FGSWTY+  E+DL     K D + +  ++E+++I A   +   +Y CC E Y +I Y+ ++RR P F+  N+IIP + I+F  +L F  P + GE+++L I   LSL+   +++ ++IP  S V PL+  +L+  M+ ++L++V  +  +N+    P    +PRW+ T+ F+ + P V   R     T   G     R  ++   K +   H     L E        +L   ++ L H  +    + +N E     E+  N  Q +  +   +N+ K   D W+ +A  VDR
Sbjct:   33 TEERLFHKLFSHYNQFIRPVENVSDPVTVHFEVAITQLANVDEVNQIMETNLWLRHIWNDYKLRWDPMEYDGIETLRVPADKIWKPDIVLYNNA---VG-DFQVEGKTKALLKYNGMITWTPPAIFKSSCPMDITFFPFDHQNCSLKFGSWTYDKAEIDLLIIGSKVDMNDFWENSEWEIIDASGYKHDIKYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVVPLVGEYLLFTMIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVKTV-FLKLLPQVLLMRWPLDKTRGTGSDAVPRGLARRPAKGKLASHGEPRHLKECFHCHKSNELATSKRRLSH--QPLQWVVENSEHSPEVEDVINSVQFIAENMKSHNETKEVEDDWKYVAMVVDR 465          

HSP 2 Score: 166.392 bits (420), Expect = 4.649e-43
Identity = 102/332 (30.72%), Postives = 167/332 (50.30%), Query Frame = 3
Query: 2388 WTPIRITKIKQ*HLPAIVRSSCSIDIKNFPFDEQKCDLEFGSWTYNGYELDLFYANDKADTSFYLASAEFDLISAKAKRFVKRYECCPEPYPNIIYTVHVRRQPGFFLFNVIIPSMVITFFAILTFSSPPNVGERISLAIESFLSLSFLCMMVADSIPVNSDVSPLITNFLMVCMMLISLALVFNMISMNLTGTKP----VPRWLHTLAFVYIGPLVGYCRDTNATTNSLGRFFSSRVPSKIENKVRFMIHKLHTQLSE-------KKLYYGEKMLRHLCRSEHCMPQNREEVLHEEERQNMRQILKRSSVENNQ-KFNRDFWRCIAQTVDR 3347
            WTP           PAI +SSC +DI  FPFD Q C L+FGSWTY+  E+DL     K D + +  ++E+++I A   +   +Y CC E Y +I Y+ ++RR P F+  N+IIP + I+F  +L F  P + GE+++L I   LSL+   +++ ++IP  S V PL+  +L+  M+ ++L++V  +  +N+    P    +PRW+ T+ F+ + P V   R     T   G     R  ++   K +   H     L E        +L   ++ L H  +    + +N E     E+  N  Q +  +   +N+ K   D W+ +A  VDR
Sbjct:  148 WTP-----------PAIFKSSCPMDITFFPFDHQNCSLKFGSWTYDKAEIDLLIIGSKVDMNDFWENSEWEIIDASGYKHDIKYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVVPLVGEYLLFTMIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVKTV-FLKLLPQVLLMRWPLDKTRGTGSDAVPRGLARRPAKGKLASHGEPRHLKECFHCHKSNELATSKRRLSH--QPLQWVVENSEHSPEVEDVINSVQFIAENMKSHNETKEVEDDWKYVAMVVDR 465          
The following BLAST results are available for this feature:
BLAST of TCONS_00068837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA66.381e-7633.41Neuronal acetylcholine receptor subunit alpha-6 OS... [more]
back to top