TCONS_00068834 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00068834
Unique Name	TCONS_00068834
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1786

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_49:168482..174218-

transcript sequence

>TCONS_00068834 ID=TCONS_00068834|Name=TCONS_00068834|organism=Clytia hemisphaerica|type=transcript|length=1786bp
ATCTGGAGAGAGAGAACACTAAATTTTATCAACAATATTTTCatcaagtt
ttatttcaaacatTAACATAGTTACTTcacacttttaaaatttttgatca
aCGATATCATCATTGTGTTATAGAGGTCACAGTTTTCAACTTCCAAAACA
TATTCCTTCGTGGAATAAGTAACTCTGTTCAATTTTTATCTAACCTTTCC
AAATTTGAAGTCGAAAATGAAGATTGCAAAATGAAGAAGGAAATTACCTT
TGTCTTTATTATAGTGGTGTTACTGGATGTTGTCAGTTGCAATGATGCAG
AACTGAGGCTGTTTGAGAAATTATTCACAGGCTATAACAACAAAGTGAGA
CCCATCAATGACAAATCAAAACCAGTCAACACAACCCTGGATATTGCTTA
CGTACAGCTTGTCCAACTGGATGATCGAGAACAAACTTTGATCAGCAACG
TCTGGGTGCGTCAGAACTGGCAGAATGACAAATTGACGTGGGATCCGAAG
GACTTTGATAACATCACCGTCATTAATGTTCATCCGTCAAAAGTTTGGCT
GCCGGACGTCATTCTTTATAACAAcGCGAAGAGTGGCGTGGGAGCAGGCA
TGATGTATCGTTTCAAGACCAAAGTCTCCATTTTTCACAACGGACTTAAC
AAATGGTACGCTCCAGCCATCGTTCGGAGCAGTTGTAGTATTGACATCAA
AAACTTCCCTTTCGACGAACAAAAATGTGACCTGGAGTTCGGTAGTTGGA
CGTATAATGGATATGAATTGGATTTGTTCTACGCCAATGACAAAGCTGAC
ACTTCTTTCTATTTGGCAAGCGctgaatttgatttgatttcagCCAAAGC
CAAGCGATTCGTCAAAAGATACGAATGTTGTCCAGAACCATACCCGAATA
TCATCTACACAGTGCACGTGCGTCGCCAACCTGGTTTCTTTCTCTTCAAC
GTCATCATCCCTAGCATGGTTATCACCTTCTTTGCTATTCTCACTTTCTC
CTCTCCTCCCAACGTCGGAGAGCGCATCTCCCTGGCTATCGAATCTTTCC
TGTCTTTGAGTTTCTTGTGTATGATGGTAGCGGACAGTATACCGGTCAAT
TCGGATGTGTCTCCCCTCATCACCAACTTCTTGATGGTGTGTATGATGCT
CATCTCCTTGGCACTAGTTTTTAACATGATCTCCATGAACCTGACTGGCA
CCAAACCCGTACCACGATGGTTACATACATTGGCTTTTGTCTACATTGGA
CCACTTGTTGGTTATTGCCGAGATACAAATGCCACCACCAACAGTCTTGG
ACGATTCTTTTCATCACGCGTGCCAAGTAAAATCGAAAATAAAGTCAGGT
TTATGATTCACAAGTTGCATACTCAGTTATccgagaaaaaattgtattac
gGAGAGAAAATGTTGCGCCACCTTTGCCGTTCAGAACATTGCATGCCACA
AAACAGGGAGGAGGTTCTTCACGAAGAGGAGAGACAAAATATGCGACAAA
TCTTGAAACGCTCCTCCGTAGAGAACAATCAAAAGTTCAACCGTGATTTC
TGGCGATGCATCGCACAAACTGTGGATCGTGTTTGCGTTGTCAGCTTCTC
GACCAGTTTCTTGTTCGTCTCTGCCGCTGTCCTCATGAAGGGGTATGGAC
ACCAattagaattacaaaaataaaacaataacatCTCacttataattatt
tttatcgTAAATACATTTGGTCAATTCCTTTACCGACCTATTAACAATTG
AGTTTAACTAAAGAGAAATACGTAAACATACCTCAA

Run BLAST on NCBI

transcript from alignment at scaffold_49:168482..174218-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00068834 ID=TCONS_00068834|Name=TCONS_00068834|organism=Clytia hemisphaerica|type=transcript|length=5737bp|location=Sequence derived from alignment at scaffold_49:168482..174218- (Clytia hemisphaerica)
ATCTGGAGAGAGAGAACACTAAATTTTATCAACAATATTTTCATCAAGTT
TTATTTCAAACATTAACATAGTTACTTCACACTTTTAAAATTTTTGATCA
ACGATATCATCATTGTGTTATAGAGGTCACAGTTTTCAACTTCCAAAACA
TATTCCTTCGTGGAATAAGTAACTCTGTTCAATTTTTATCTAACCTTTCC
AAGTAAGCTATCATTTATTCATTCTCTTAATCAACTTCTATTTGAATAGT
TTCAACTCACCAACACCCTGCTGTGGAATGTCTTAAAACCAATTCAATCT
TTCTGACAAGCTGGTCGACGCTTTCTCCGTCAATTGAAAATTATTTTGCA
CAGAAACTGAAAAAGTCAACAGAAATAGGAAATAATTTCATTGATTTCCG
ACTTTTGAAAGTTTTGAAAACATCACAAGATTTTTAAAATGGTGTCGCTA
AAAAATTTGAGTAGAAACTCTTCCTCAATTTGACATAACAAAGGTCTTCA
ACTTTTCATGAAAAACGAAAGCACGAGGGGCAGTATTTCATGGGAAAAAC
ATTCGCAAATAAAAATAATTTTAAGTAGTCTTCTTTTTCTCCTTTCAGAT
TTGAAGTCGAAAATGAAGATTGCAAAATGAAGAAGGAAATTACCTTTGTC
TTTATTATAGGTAAGTATCACCTGTCAGTATTTCATATCTGTTATCTTTA
GCATTTCGAAGAGTCATGTTTCCTTTAAACTTTTCAGCGCTTTTCTTTCA
GTGGTGTTACTGGATGTTGTCAGTTGCAATGATGCAGAACTGAGGCTGTT
TGAGAAATTATTCACAGGCTATAACAACAAAGTGAGACCCATCAATGACA
AATCAAAACCAGTCAACACAACCCTGGATATTGCTTACGTACAGCTTGTC
CAACTGGTAAGTGCTCTCATGTAACACGTTTTTTTATAAGCACATCTAAT
TTTTTTTAAAGCCTTCGGATGTTCTTAAATTTTTAAGTTTCGAGCCTAAA
AATGTTCTTAACATGTTCTTATTTCAACCAATTTTTGACCATTTTTACCC
ATTTTCCTAAGAAATCGAGTGTTTTTGAGACCATAAAGCCTTAAATAGTT
CCTATCTCGTTTTTAACATTTTGGCCGTCGAAGCCTTATGTTCTTATATA
GTTTGTTCTTATAAAGAAAAAGGGTAACACCCCTGTGTCACCCACTGGGT
CCCAACCCCACTGAAAGATTTGGCCAAAATTTCGTCTGTGGGAAAAATGT
CTTCCAATTTCATATCAGTCCCATTGGGAAATTGACTTTGATTTCATCCC
CATTTGAAATTCAATGTTTAGAAATTGCACTCCAAAACTATCCCCCTAGA
TTTTTCAAGCTTGGAGCAATAGAATTGTAGCCCCATTGGGATTTTGGTTA
AAATTTTTATCCCTGNCTCCAAAACTATCCCCCTAGATTTTTCAAGCCTG
GAGCAATAGAATTGTAGTTTTGGTTAAAATTTTTATCCCTGATGTGGGAA
AAGGTTTCACCGGTACTGTGAGACAGGGATTTCACATGTAGGTTGTAAAC
GGCCCTATCAGGAAAAATATTAACCGCTCAAGAAGTCATGGATGCTTTCA
AATAGGGCATGCAAAACAGTGCACTAAGATGTAAAAGTATGAAACAGTTT
GGTCTAAACCTCAAGGCAAAAGAGTTAGCACCTGATATTGTATTTTACAG
ACCGAAACAGACTTCTAATAAAACCTAAAATCAATTTTTTTTCTCCAAAG
TATGCATACATATTGTTAGAAATCATTTTAAACTGATTCAGAAAAATATT
ACAACCTATTTCTGAAAATAAATTCATTCTAATAAATATTGAAAAAGTCT
CATTTTACCTGAAAACATCTGAAAACTGAAAACATCGGTTGAAGTTAAAA
CATTACGGGCTTCATAAAGAATTTGTTCATACCATTTTCGATTCATGATA
AATCCAAGATCACAAAGTCCAATATTTCTAACAATTCTGTATTCGAGTTA
AGTTGACTAAATAATTGTCCTTCTTTTTCCTTAGGATGATCGAGAACAAA
CTTTGATCAGCAACGTCTGGGTGCGTCAGGTATGTCTTCCATAGTCTACT
TGAAATCGATATAAAACATATCTAACATTATCACCAACAACAAATTTTGA
AAAGTTTCTTAAACTTGTGATTTCAGCACCATGGTAAAGTACCCTTAACA
CACCCTTTTATTACAGTCCCGCACTGGAGAATTTTGGCCAAAATTTCTTT
CCCGGTGGAAAAAATACCCTGCAATTTCACCCCTGGCAAATTGACTTTGA
TTTCACCACCTGGCAAATTGACTTTGATTTCATCCCCATTCGAAGTTTCA
ATTGAAAAAATTGCACCCAAAAACTATCTCTACTGGTTTTCTAAGCTGAG
AATGATAGAAAATGTTTACCCACCCCCTTGTAGAAAACCGGGGCTGCGAG
ACAGGGGTGTATTAACTTCGGTTGAAAAAATACTAGACTCTAATTTAATC
AAATTGTTTATTTCCGAAAAAATATGGATCAAAGCCTTTTTAAATAAAGT
TTTTTTAAATTCTTGATTGTCATTTCTTTGCGCAGAACTGGCAGAATGAC
AAATTGACGTGGGATCCGAAGGACTTTGATAACATCACCGTCATTAATGT
TCATCCGTCAAAAGTTTGGCTGCCGGACGTCATTCTTTATAACAAGTATC
CGTCATTTTTTTCTTCAAAACCCTTTTTTAAAGTACAAATATGAGAAATA
AAATATGTTAGACTCGTTACTTTCGAGGATCTCCTCAAAAACAGCGGTAG
AGGAGCAGAAAAAAAAACCACTAGCATAATTACCTTCTTAAGACACTATT
ATTTCTTCATTTTTGTTTTTCAGCGCGAAGAGTGGCGTGGGAGCAGGCAT
GATGTATCGTTTCAAGACCAAAGTCTCCATTTTTCACAACGGACTTAACA
AATGGTATGGAATTAACTATTCATATGAAGAATGTCAAAATGATACTTGC
TCGGAAGAATAATAATACTTCCTGACATTATGCAATTCCCCCATCTTTTT
TCCAGGTACGCTCCAGCCATCGTTCGGAGCAGTTGTAGTATTGACATCAA
AAACTTCCCTTTCGACGAACAAAAATGTGACCTGGAGTTCGGTAGTTGGA
CGTATAATGGATATGAATTGGATTTGTTCTACGCCAATGACAAAGCTGAC
ACTTCTTTCTATTTGGCAAGCGCTGAATTTGATTTGATTTCAGCCAAAGC
CAAGCGATTCGTCAAAAGATACGAGTAAGAATCATTCCTTATTTAGAAAG
AGTAAGCCTGGCCCGCAAATTCCTTCCTACCTTCTTCTATATAAAAAGCC
TCAATTTTCATAGTACGAAGGACTTAGAAGATTTAGAACTTCTGTTCATA
AAGATTTCGAAATTCTTTGAGCTGAATATGGTTAAGCTTATTAAAAGATC
TTCCAAAAGATAAAAAAAAGCGAAGGCGCGCGTTGGCGAAGAGGGTCAAC
GGAAGGCTTATCTTGGCGTCTTTTCTATCTCTTTCAGATGTTGTCCAGAA
CCATACCCGAATATCATCTACACAGTGCACGTGCGTCGCCAACCTGGTTT
CTTTCTCTTCAACGTCATCATCCCTAGCATGGTTATCACCTTCTTTGCTA
TTCTCACTTTCTCCTCCCCTCCCAACGTCGGAGAGCGCATCTCCCTGGCT
ATCGAATCTTTCCTGTCCTTGAGTTTCTTGTGTATGATGGTAGCGGACAG
TATACCGGTCAATTCGGATGTGTCTCCCCTCATCACCAACTTCTTGATGG
TGTGTATGATGCTCATCTCCTTGGCACTAGTTTTTAACATGATCTCCATG
AACCTGACTGGCACCAAACCCGTACCACGATGGTTACATACATTGGCTTT
TGTCTACATTGGACCACTTGTTGGTTATTGCCGAGATACAAATGCCACCA
CCAACAGTCTTGGACGATTCTTTTCATCACGCGTGCCAAGTAAAATCGAA
AATAAAGTCAGGTTTATGATTCACAAGTTGCATACTCAGTTATCCGAGAA
AAAATTGTATTACGGAGAGAAAATGTTGCGCCACCTTTGCCGTTCAGAAC
ATTGCATGCCACAAAACAGGGAGGAGGGTCTTCACGAAGAGGAGAGACAA
AACATGCGACAAATCTTGAAACGCTCCTCCGTAGAGAACAATCAAAAGTT
CAACCGTGATTTCTGGCGATGTATCGCACAAACTGTGGATCGTGTTTGCG
TTGTCAGCTTCTCGACCAGTTTCTTGTTCGTCTCTGCCGCTGTCCTCATG
AAGGGGTATGGACACCAATTAGAATTACAAAAATAAAACAATAACATCTN
CCAGCCATCGTTCGGAGCAGTTGTAGTATTGACATCAAAAACTTCCCTTT
CGACGAACAAAAATGTGACCTGGAGTTCGGTAGTTGGACGTATAATGGAT
ATGAATTGGATTTGTTCTACGCCAATGACAAAGCTGACACTTCTTTCTAT
TTGGCAAGCGCTGAATTTGATTTGATTTCAGCCAAAGCCAAGCGATTCGT
CAAAAGATACGAGTAAGAATCATTCCTTATTTAGAAAGAGTAAGCCTGGC
CCGCAAATTCCTTCCTACCTTCTTCTATATAAAAAGCCTCAATTTTCATA
GTACGAAGGACTTAGAAGATTTAGAACTTCTGTTCATAAAGATTTCGAAA
TTCTTTGAGCTGAATATGGTTAAGCTTATTAAAAGATCTTCCAAAAGATA
AAAAAAAGCGAAGGCACGCGTAGGCGAAGAGGGTCAACGGAAGGCTTATC
TTGGCGTCTTTTCCATCTCTTTCAGATGTTGTCCAGAACCATACCCGAAT
ATCATCTACACAGTGCACGTGCGTCGCCAACCTGGTTTCTTTCTCTTCAA
CGTCATCATCCCTAGCATGGTTATCACCTTCTTTGCTATTCTCACTTTCT
CCTCTCCTCCCAACGTCGGAGAGCGCATCTCCCTGGCTATCGAATCTTTC
CTGTCTTTGAGTTTCTTGTGTATGATGGTAGCGGACAGTATACCGGTCAA
TTCGGATGTGTCTCCCCTCATCACCAACTTCTTGATGGTGTGTATGATGC
TCATCTCCTTGGCACTAGTTTTTAACATGATCTCCATGAACCTGACTGGC
ACCAAACCCGTACCACGATGGTTACATACATTGGCTTTTGTCTACATTGG
ACCACTTGTTGGTTATTGCCGAGATACAAATGCCACCACCAACAGTCTTG
GACGATTCTTTTCATCACGCGTGCCAAGTAAAATCGAAAATAAAGTCAGG
TTTATGATTCACAAGTTGCATACTCAGTTATCCGAGAAAAAATTGTATTA
CGGAGAGAAAATGTTGCGCCACCTTTGCCGTTCAGAACATTGCATGCCAC
AAAACAGGGAGGAGGTTCTTCACGAAGAGGAGAGACAAAATATGCGACAA
ATCTTGAAACGCTCCTCCGTAGAGAACAATCAAAAGTTCAACCGTGATTT
CTGGCGATGCATCGCACAAACTGTGGATCGTGTTTGCGTTGTCAGCTTCT
CGACCAGTTTCTTGTTCGTCTCTGCCGCTGTCCTCATGAAGGGGTATGGA
CACCAATTAGAATTACAAAAATAAAACAATAACATCTCACTTATAATTAT
TTTTATCGTAAATACATTTGGTCAATTCCTTTACCGACCTATTAACAATT
GAGTTTAACTAAAGAGAAATACGTAAACATACCTCAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042913	XLOC_042913	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_49	supercontig	scaffold_49:168482..174218 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0606769	0	0.00937146	0	0.198769	0.253846	0.533145	0.363978	0.190889	0.176663	0.0383236	0.01593	4.39758	5.78938	0.219108	0	14.7791	14.4192	3.97437	7.17989	5.93389	7.38283	0.0666933	0.230451	0.0742112	0.393397

Blast

[Close]

BLAST of TCONS_00068834 vs. Swiss-Prot (Human)
Match: ACHA6 (Neuronal acetylcholine receptor subunit alpha-6 OS=Homo sapiens GN=CHRNA6 PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.014e-78
Identity = 147/440 (33.41%), Postives = 234/440 (53.18%), Query Frame = 3

Query:  297 AELRLFEKLFTGYNNKVRPINDKSKPVNTTLDIAYVQLVQLDDREQTLISNVWVRQNWQNDKLTWDPKDFDNITVINVHPSKVWLPDVILYNNAKSGVGAGMMYRFKTKVSIFHNGLNKWYAPAIVRSSCSIDIKNFPFDEQKCDLEFGSWTYNGYELDLFYANDKADTSFYLASAEFDLISAKAKRFVKRYECCPEPYPNIIYTVHVRRQPGFFLFNVIIPSMVITFFAILTFSSPPNVGERISLAIESFLSLSFLCMMVADSIPVNSDVSPLITNFLMVCMMLISLALVFNMISMNLTGTKP----VPRWLHTLAFVYIGPLVGYCRDTNATTNSLGRFFSSRVPSKIENKVRFMIHKLHTQLSE-------KKLYYGEKMLRHLCRSEHCMPQNREEVLHEEERQNMRQILKRSSVENNQ-KFNRDFWRCIAQTVDR 1580
             E RLF KLF+ YN  +RP+ + S PV    ++A  QL  +D+  Q + +N+W+R  W + KL WDP ++D I  + V   K+W PD++LYNNA   VG       KTK  + +NG+  W  PAI +SSC +DI  FPFD Q C L+FGSWTY+  E+DL     K D + +  ++E+++I A   +   +Y CC E Y +I Y+ ++RR P F+  N+IIP + I+F  +L F  P + GE+++L I   LSL+   +++ ++IP  S V PL+  +L+  M+ ++L++V  +  +N+    P    +PRW+ T+ F+ + P V   R     T   G     R  ++   K +   H     L E        +L   ++ L H  +    + +N E     E+  N  Q +  +   +N+ K   D W+ +A  VDR
Sbjct:   33 TEERLFHKLFSHYNQFIRPVENVSDPVTVHFEVAITQLANVDEVNQIMETNLWLRHIWNDYKLRWDPMEYDGIETLRVPADKIWKPDIVLYNNA---VG-DFQVEGKTKALLKYNGMITWTPPAIFKSSCPMDITFFPFDHQNCSLKFGSWTYDKAEIDLLIIGSKVDMNDFWENSEWEIIDASGYKHDIKYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVVPLVGEYLLFTMIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVKTV-FLKLLPQVLLMRWPLDKTRGTGSDAVPRGLARRPAKGKLASHGEPRHLKECFHCHKSNELATSKRRLSH--QPLQWVVENSEHSPEVEDVINSVQFIAENMKSHNETKEVEDDWKYVAMVVDR 465

The following BLAST results are available for this feature:

BLAST of TCONS_00068834 vs. Swiss-Prot (Human)

BLAST of TCONS_00068834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ACHA6	1.014e-78	33.41	Neuronal acetylcholine receptor subunit alpha-6 OS...	[more]

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TCONS_00068834 (transcript) - C. hemisphaerica