TCONS_00068831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068831
Unique NameTCONS_00068831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068831 ID=TCONS_00068831|Name=TCONS_00068831|organism=Clytia hemisphaerica|type=transcript|length=1271bp
acaACTCCAAGCaatttgggacatttgttcggcctcaagacgtcgggaaa
cgtctgaactttttcgtgggtcacccgggtATATTTTCCATCCCTTCCCC
ATGGGGATTAGGTATTCCTTGTTTATCAAGCACCTGGGATTAGACACTCC
CTAATAATAGAAtctattgttgttgttttactACTTCTGAGCCTTTAGTT
TTTTACCATCAGACAATCTGCACAtcacaaaatttctttccttgtCAATA
TTAATGGCACTGGCCAaagttattctttgtaaaatatacatttttttata
tttattgtaCATAGAACACAAAAGAATAACTCTAACACTGAAGCTTCTGA
ACCATTCcccataaaaaaacaaacacaacATAACTATGGCTCGTCTACGG
GTATCACTAATAGACTTCCACATTTACGTCTTATATTTTCATGAACAATA
ACGTCATTGTTTCCCTTTTCATCTTTCTTATCTTAtttattgttcttttt
gttttgtttagaaaaataaagataaattgATTAATAAAAAACATGGCCTC
AATCACAAGCAAGTTTGGGTTACCTTTGAGACAGGTAATTCGACATTGCA
CCAGTCAAATGAAATATGATGGTCCTGTTGAAAAGTGTGTGAATAGTGTA
CAAATCCTTGGTCGAGTCGGTCAAGACCCAATCACTCGTGgtgaaaatga
caattttgtaACCTTCAGTATGGCTACATCTAAAACGTATGCAAAGAAAA
ATATGACAGGGGAAACTGACTACAACACACGAACGCAATGGCATAACATC
ACAGTCTTTAGACCTTTTCTCATTGAGCGTGTCCAAAAACAAATCTCTAA
AGGGACAAGAGTGATGGTACAAGGAGCCATAGAATATGTTGATTATACAA
AACCTGACGGAAATAGAGTTCTGATGACCAGGATTGTACCAGATGACATT
TTCATTCTCTCCGGCACTGACCACGATGCACAAACTCACTGATCAAATCA
CGTGACATACTAACCAAAAGAGAAAATCAAATAGgtttatattttacaaa
ggaagaagaaaatatttatgttTTATAGTAGAGATTTTTTGTAGcctttt
ttatttcacttttttacaagaaagaactcttttttaacttttttttgtta
ctGAACCAATGACAATGTCGATTGTTTTCCAAACCCCTCAGATTATAGAT
TCCAACCTGGTTATGTAATGGCTCATAGAACATGTTACAAGACAAATAAA
ACATGATGGATTTGTTTTTCT
Run BLAST on NCBI

transcript from alignment at scaffold_49:98222..101948-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068831 ID=TCONS_00068831|Name=TCONS_00068831|organism=Clytia hemisphaerica|type=transcript|length=3727bp|location=Sequence derived from alignment at scaffold_49:98222..101948- (Clytia hemisphaerica)
ACAACTCCAAGCAATTTGGGACATTTGTTCGGCCTCAAGACGTCGGGAAA
CGTCTGAACTTTTTCGTGGGTCACCCGGGTATATTTTCCATCCCTTCCCC
ATGGGGATTAGGTATTCCTTGTTTATCAAGCACCTGGGATTAGACACTCC
CTAATAATAGAATCTATTGTTGTTGTTTTACTACTTCTGAGCCTTTAGTT
TTTTACCATCAGACAATCTGCACATCACAAAATTTCTTTCCTTGTCAATA
TTAATGGCACTGGCCAAAGTTATTCTTTGTAAAATATACATTTTTTTATA
TTTATTGTACATAGAACACAAAAGAATAACTCTAACACTGAAGCTTCTGA
ACCATTCCCCATAAAAAAACAAACACAACATAACTATGGCTCGTCTACGG
GTATCACTAATAGACTTCCACATTTACGTCTTATATTTTCATGAACAATA
ACGTCATTGTTTCCCTTTTCATCTTTCTTATCTTATTTATTGTTCTTTTT
GTTTTGTTTAGAAAAATAAAGATAAATTGATTAATAAAAAACATGGCCTC
AATCACAAGCAAGTTTGGGTTACCTTTGAGACAGGTATGAGCGTTTTCTT
TTTTTTTTGACTTTTGTATTTAATGTATTTAAATAGTACGTTTTATCCCA
GTGATAAATTAAGTTGTAATAGATAAATTCTGACTGAATTTTTTCATTGA
TCTTCGATTTCCAATTTTCAGACAATTCGACATTGCACCAGTCAAATGAA
ATATGATGGTCCTGTTGAAAAGTGTAAGGAATCAAAACAAACTTTTCAAT
TAGTTTTTTTTTCAATTCGGTTCTTGTTGCATATTTTCATTTCACAAAAT
ATAAAGAAGGATTTATTCCATCAAATTTCAATACAGGGTGAGGGTTGACA
AACCTTTTCAAGTCAAAAAAGATTCTTAATAAATGTGTAGATACCCCCTG
AAAAATGACAAAATTTCAAGGTGAACCCTTGGAAATTTTTTTAACTTCAA
CCCCCTTTAACCTCTTTTAAACCCTCCCTTGAAATACTTCTCGGATTATC
CCCTGGAAATTTTCGTCCACCCTCTGTATGGAGATGAAATAGAATGGCCC
AATGACCTCTCATTTTCTTTAGGTGTGAATAGTGTACAAATCCTTGGTCG
AGTCGGTCAAGACCCAATCACTCGTGGTGAAAATGACAATTTTGTAACCT
TCAGTATGGCTACATCTAAAACGTATGCAAAGAAAAATATGACAGGGGAA
ACTGGTTTGTAATCAATTTATCTGATAGTTCAATAACATCAATAATCTGT
GAATGACAAAGTGCTCTATACCAAGGTAGAGCTGAATTAATTTAAAATGT
ATATTTCTTCAAAAATCAAAACAACATTACAGCTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTCAGATGTGTGATGAATAAAAAATTTT
GAACAAATTTCTGCTCTAAAAACATATAAAAGGACGATTAATTGACAGGT
TGTAAAAGTGATAAATAGTAATAAAAAATGAGTTAATTGGTTAAAAAGTA
TGTATATAAATTGTGTCTAGGGAAATTGGTTTAAATAAAATGTTGATTTT
GATAATAAAATACAATAAAGGAACGTGAAAGTTATCACCCATCTGGAGGG
ACTGTTTTGTAATTTTCCAATAAGAATTTGTTAACGTGTCGGCATTTTGA
AATTAATTCAGATTTTGTGTTAACGAGTTCACGCTTGGAGGTGATTATAT
TCACTTTTTCAGTTAAGCATAAATTGCAATTTATGATACAATTTATATAC
ATACATCTTTATCTCTACTTTTATGTAGTAATGACTTTCTGACGACTCGG
TATTTTCTTTCTATTTTCAGACTACAACACACGAACGCAATGGCATAACA
TCACAGTCTTTAGACCTTTTCTCATTGAGCGTGTCCAAAAACAAATCTCT
AAAGGGTATGATTAATTTTTCATTCATCAAACTAAAAATTTGATTAGTAT
CGTTTCAAGGGTATTTTTAAGTACTTCCTTCATCTCGTATACGTTTTATT
ACTTTATTTCCGATAGGACAAGAGTGATGGTACAAGGAGCCATAGAATAT
GTTGATTATACAAAACCTGACGGAAATAGAGTTCTGATGACCAGGATTGT
ACCAGGTACTAATTTTGCGGTTCATTTTAAACCATTTTACAAGCTTTTTT
CATAAGAATATACTTTATAAGAATATTCATGATGAAATTGGCCGGAAGAT
AAAGAATATGGTAAAACCACCATCATGGTTCCACAAAAATGCCAAATTTT
TGTCTAAGGTATCTTTAACATGCTAGATTTTGGCTGGGTTTGGATCCAAA
CCTGAGAATACCGTAAGAATATTTCAGGATGGTTTTTCCCAAAAAGTTAG
GATATTCATGATGAATAGGACAAACACCATTCTTATAAATAAAGCGTGTA
CGCCACTTTTCTCCAACAATGTTCCATCTTTTTCACAATCACCTCAGACT
TCTTTTTGTTTCTGTATAATTTCTATCAATTGCTGTTATTAAAATTTGGT
CTAAGAAAGGCTATCGAAACTTACACCCTCATTAATCATTGAACCCAATT
AATTAAACCGAGTCGTACTCAAAAAGAAAAAAGAACTAATTCCGAGAAAT
CGCTAAAAACTTTAAAATCGAATTATCAAAATTAGCATGGTTACACGAAA
AGCGTTAAAATCTGAAAACTCTAACAAAGTAGTTTCGATTAACATGGCTA
TGCTGAAGAAATCAGTGCTGGGCTTTAGAGTCATACACTTTTCTCTTTTA
TAAGAGCAATGCCGAGCCTAAAATTACTCAATTTCAAGCAATTTAGAGTT
CTAGTAAAAATTGGGTGAAAGCCTAAAATACCTCAAATATTACACCCAAA
AATTAGGTGTAAAAAGGTGTAAACCAAAAGATTTTGCTTCATTCTGTGAA
AAGTAATTTGAAAATTTTGAAGAGCTTTGACCCTCGGTAAGAAGAACCGT
TTCCAATTTAACTTTTCGTTTCTATTTCCAGAGGAATTCTGTTCTTAATT
AACGAAGACTTGAATATTTGATTTAATAAACAATTTTAAACAATCTTTAT
AAGTGAATCATTAGATGATCTTCCTTTGATCCTAACATTTCATCCAATTG
ACCAGATTTTATAAATGAGTAAAGTTCATCCTTTCTGATGCTAAATTCGT
TTTTTTTGTATACTGTACTTGTGAAAATGCACTCAAAAAGAGAATTACGC
CTTGTAGTTGACTTCCTCAATCAACGATAATCTTTGTGTTTTTTTCAGAT
GACATTTTCATTCTCTCCGGCACTGACCACGATGCACAAACTCACTGATC
AAATCACGTGACATACTAACCAAAAGAGAAAATCAAATAGGTTTATATTT
TACAAAGGAAGAAGAAAATATTTATGTTTTATAGTAGAGATTTTTTGTAG
CCTTTTTTATTTCACTTTTTTACAAGAAAGAACTCTTTTTTAACTTTTTT
TTGTTACTGAACCAATGACAATGTCGATTGTTTTCCAAACCCCTCAGATT
ATAGATTCCAACCTGGTTATGTAATGGCTCATAGAACATGTTACAAGACA
AATAAAACATGATGGATTTGTTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042912XLOC_042912Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068831-exon-scaffold_49-1575043694:101363..101948TCONS_00068831-exon-scaffold_49-1575043694:101363..101948Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1575043694:101176..101225TCONS_00068831-exon-scaffold_49-1575043694:101176..101225Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1575043694:100695..100826TCONS_00068831-exon-scaffold_49-1575043694:100695..100826Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1575043694:99894..99978TCONS_00068831-exon-scaffold_49-1575043694:99894..99978Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1575043694:99694..99782TCONS_00068831-exon-scaffold_49-1575043694:99694..99782Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1575043694:98222..98550TCONS_00068831-exon-scaffold_49-1575043694:98222..98550Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1510915933:101363..101948TCONS_00068831-exon-scaffold_49-1510915933:101363..101948Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1510915933:101176..101225TCONS_00068831-exon-scaffold_49-1510915933:101176..101225Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1510915933:100695..100826TCONS_00068831-exon-scaffold_49-1510915933:100695..100826Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1510915933:99894..99978TCONS_00068831-exon-scaffold_49-1510915933:99894..99978Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1510915933:99694..99782TCONS_00068831-exon-scaffold_49-1510915933:99694..99782Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1510915933:98222..98550TCONS_00068831-exon-scaffold_49-1510915933:98222..98550Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1491911889:101363..101948TCONS_00068831-exon-scaffold_49-1491911889:101363..101948Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1491911889:101176..101225TCONS_00068831-exon-scaffold_49-1491911889:101176..101225Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1491911889:100695..100826TCONS_00068831-exon-scaffold_49-1491911889:100695..100826Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1491911889:99894..99978TCONS_00068831-exon-scaffold_49-1491911889:99894..99978Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1491911889:99694..99782TCONS_00068831-exon-scaffold_49-1491911889:99694..99782Clytia hemisphaericaexon
TCONS_00068831-exon-scaffold_49-1491911889:98222..98550TCONS_00068831-exon-scaffold_49-1491911889:98222..98550Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:98222..101948 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.8438	43.9525	19.596	12.1735	10.9171	9.19082	8.46661	9.79878	7.2741	7.05103	3.26114	5.13971	3.88718	3.07082	12.2528	15.3558	20.7739	19.7662	3.99246	2.48418	10.7754	12.0932	20.7328	21.893	0	0	22.0646	14.2174	22.5781	18.7942
Blast
[Close]
BLAST of TCONS_00068831 vs. Swiss-Prot (Human)
Match: SSBP (Single-stranded DNA-binding protein, mitochondrial OS=Homo sapiens GN=SSBP1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.417e-18
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 3 
Query:  576 LRQVIRHCTSQMKYDGPVEKCVNSVQILGRVGQDPITRG-ENDNFVT-FSMATSKTY--AKKNMTGETDYNTRTQWHNITVFRPFLIERVQKQISKGTRVMVQGAIEYVDYTKPDGNRVLMTRIVPDDIFILS 962
            LRQ +RH  S+      +E+ +N V +LGRVGQDP+ R  E  N VT FS+AT++ +      +    D + +T WH I+VFRP L +   + + KG+R+ ++G I+Y +Y   +  R   T I+ D+I  LS
Sbjct:   10 LRQFVRH-ESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLS 141
The following BLAST results are available for this feature:
BLAST of TCONS_00068831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSBP1.417e-1837.59Single-stranded DNA-binding protein, mitochondrial... [more]
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