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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068817 ID=TCONS_00068817|Name=TCONS_00068817|organism=Clytia hemisphaerica|type=transcript|length=1682bpRun BLAST on NCBI protein sequence of TCONS_00068817-protein >TCONS_00068817-protein ID=TCONS_00068817-protein|Name=TCONS_00068817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp MILLEINNTIVEETLKSRISQIAANGKADAVDIKVADFDGCIFHIGNQDERun BLAST on NCBI transcript from alignment at scaffold_49:885655..906791+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068817 ID=TCONS_00068817|Name=TCONS_00068817|organism=Clytia hemisphaerica|type=transcript|length=21137bp|location=Sequence derived from alignment at scaffold_49:885655..906791+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_49:885655..906791+ >TCONS_00068817 ID=TCONS_00068817|Name=TCONS_00068817|organism=Clytia hemisphaerica|type=CDS|length=9933bp|location=Sequence derived from alignment at scaffold_49:885655..906791+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068817 vs. Swiss-Prot (Human)
Match: ARPC2 (Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1) HSP 1 Score: 417.157 bits (1071), Expect = 3.220e-142 Identity = 191/283 (67.49%), Postives = 236/283 (83.39%), Query Frame = 1
Query: 181 MILLEINNTIVEETLKSRISQIAANGKADAVDIKVADFDGCIFHIGNQDENRNKIIVSISLKFYPELQKHGADAKIKGEYGDLMITPESGYDISLLVNLEALPPNSDELIKKIGLLKRNCFASVFERYFDFLEREEDSKEKAIINYRDDETMYVEAKADRVTVIFSTVFKDDDDVIIGKVFMQEFREGRRASQTAPQVLFSHKEPPRELEGTNAARGDNIGYITFVLEKRHTKAAARENTINLIHTFRNYLHYHIKCSKAYLHSRMRAKTSDFIKVLNRARPE 1029
MILLE+NN I+EETL + AA K +AV++ ADFDG ++HI N + ++ K++VSISLKFY ELQ HGAD +K YG ++ PESGY++SLL +LE LP + D ++ + G+LKRNCFASVFE+YF F E ++ + +A+I+YRDDETMYVE+K DRVTV+FSTVFKDDDDV+IGKVFMQEF+EGRRAS TAPQVLFSH+EPP EL+ T+AA GDNIGYITFVL RHT A+AR+NTINLIHTFR+YLHYHIKCSKAY+H+RMRAKTSDF+KVLNRARP+
Sbjct: 1 MILLEVNNRIIEETLALKFENAAAGNKPEAVEVTFADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADELLKRVYGSFLVNPESGYNVSLLYDLENLPASKDSIVHQAGMLKRNCFASVFEKYFQFQEEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPD 283 The following BLAST results are available for this feature:
BLAST of TCONS_00068817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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