TCONS_00068814 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068814
Unique NameTCONS_00068814
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3017

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068814 ID=TCONS_00068814|Name=TCONS_00068814|organism=Clytia hemisphaerica|type=transcript|length=3017bp
cttgttATGATACAATTTTGCAGTGGGAACATCTAGTTTTTTTTAAACGC
CTCGGTTTTCTTTTTATGGCTTAATTTGCTAGATCCttcaaaaaaaaggg
aaaaagtgGGAATCAAGAAAGATGTACCTAAAGATACTTCGTATATTGAG
AACGAAGTGATGTCTTTAGGATCGGATATTTTACCCGAGTACCAAGTGGA
ATCTCCAAAAATCCACCCATGGACAATTCTCCATTACTCACCATTCAAAG
CCATCTGGGATTGGGTGGTCTTATTTCTCGTCATGTATACCGCCATTATC
ACGCCCTACATGGCCGCCTTCGTATTAACCAGAGATTCCAACGAGGAAAC
ATTCGCGATGCATACATCTCATGCCGCTTCTGCAATCACCATAGCTGATG
ATCCATTGGTCATCTTAGATTACATTGTTGATGTCATGTTTATTATTGAT
ATTTTCATCAACTTTCGAACGACTTTTGTTGATGTACATGACGAGGTTGT
CAGTGATCCTTGTTTAGTTGCTATCCATTATATGAAGGGATGGTTTGTCG
TTGACTTGTTAGCTGCCATACCCTTTGAGTTACTCATCATGATTGGAAAT
ACTGATCAGACGACCACGTTGATCGGTTTACTGAAGACGGCGCGTTTGCT
ACGTTTGGTTCGCGTCGCACGGAAGCTAGACCGTTACTCAGAATACGGTA
CCGCCCTTCTCATGTTACTAATGTTTGGTTTCGCCCTAGTGGCGCATTGG
TTAGCCTGCGTGTGGTACGCCATTGGAAATTTTGAACGCCATCAAGTCCA
AGAAATGGGATGGCTTTATAAGTTAGGTATCAATACAAATCAACCGTATA
ACCGGACAGATtctaacagtggaccggacattcAAACCAAGTATTTGACA
GCTCTGTATTTTACATTATCAAGCTTGACAAGTGTTGGGTTTGGGAATGT
ATCAGCAAACACCAATAGCGAGAAGATATTTACCATTGCTGTTATGCTAG
TCGGAGCATTGATGCATGCGGTTATCTTTGGTAACGTCACGGCAATCATA
CAACGTTTATATTCGGGTATGGCCCATTACCATTCCACCATGAGACGTGT
CCGTGAATTCATACGTTTCTATCAGATACCGTCACCGTTGCGGCAACGGT
TGGAAGATTATGCTCAATATGATTACTCCTATACTAACGGTATTGATATG
AACGAGGTTTTACGGAACTTTCCTGAAGGTTTACAAGCAGACATTTCGTT
ACACTTAAACCGTCATCTTTTGTCCAACAACTTGGCGTTCCGTGGTTGCA
CTCCAGGTTGTTTGCGCTCGCTCTCCTTGAAGTTCAATACAACACATTGT
CCACCGGGTGATTACATCATTCACTATGGTGACGAAATCAACAATTTGTA
CTGGATCGGCCGTGGTACGGTAGAAGTTATACAGTGTGATAGTATTATCG
CTATACTTGGTAAAGAGGATTCATTTGGAGAGAACTTTGGCCTGACATAC
AATCGAGTAACTGGCAAAGCAAAAGCCAGTATACGAGCCTTGACTTATTG
TGATTTACATTCCATTTCCAAAGAAAACCTCATGCATATTATGGCAGCTT
ATCCAGAATTTCGAAAAACTTTCAATGTGGATTTGCATATTACTTACGAT
TTGAGAGATTCACAGCTTGAAGAAAAAGATGTCAACAGCTCAATCTTCAA
TTCCTCACCATCATTCAACGCGCAACGTTTCTCGAATAACGTACGTACTA
CGCCTTTCGATCGTCTATCGCCTAGTTACAACGGCTCACCTTGCCGGACG
TGTACTAGCAGCGGCTTCACTAAATCAACTACGGAGTTTTCAAGCGATGA
GCGACGTGCAAGTAGACCTTTATTAGACTCGTTATCTGAAGAAGACCCAT
GCTCCTCCAGCAGTTGTCAAAGTCGCATGACTAAAAATAAATGTCCAACA
TCTAATAAAATAGTTGATAGTTCTTTTATCGCGACGTCACCAGTAGCTAT
ACGAAGAGATACACATCTTTCAGCTACGTCTCATCATAACGTTGCTGCAA
CGTCGTACCACGATGGATCTTGTACTTTAGAACTGAGACGAGAAGTTGAA
GAGATGAGAACCCATTTATTCCGTATTGAAAGTCTTTTGAAACAAGACAT
GAAAAAAGTTGTCGATTTGTTAGAAGAGAAAGTGACGTCAACATCTTCGA
CCACGCCCAATAAAACAAATAATGATagtaataataacaataatactTCT
ATCAAGAACAACAATACCCATAATGCAACAGTAGTCAAAAATAACAATAA
CCATACTTCGATTCCATCTACAACGACATCCAATCACAACCATATCAAGG
TTTTAACAACAGACAAAACTAAAATTAATTCTTCATCTTCAAACTCGAAC
AGGGTTAAGAACCAATAGCAATAAACATGATGTTTCGGGgacaaaagaaa
taaagaaaaaggaaataacCGAGACTTTTTAGGTGATTCACGGCAAAAAG
TTGCAGTCGTTTAATAATTCACAGTGAATAAAAGTTGACCTtctctaatt
tgacgttctactattctaTCCGCTagattattcgataatattgaaagtca
ccgacAACGAAAAACTCTTATTAACGGTGCTCTGTTATTCAAATCCAAAT
CCGATTCTTGAATTAGATTAGAATTGAATTAGAGAACGTCAAAAACTTTC
CAATCTGGTGGCAGCTTTTTTACCGTAAATTCAAAAGTCACAgcatattt
ttggtttttcctgTAGAAATTTGTCAATATCTTTGATTTCAGTAAAGAGA
TAtttacgcttttttataagaatatactttataaaaatatttatgatgaa
attggccaaaaatcaagaatatactaagaatatcaccatcatggagtTTG
GCAACCGAACTTAAGTCATCTTACCCCAGTTTCACCGTgataaattttat
gaattttgtgTATGATTCATTTTCTATATTGTCTATATTCCgaataaaaa
aaacagtaaGTGCAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_49:835632..845489+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068814 ID=TCONS_00068814|Name=TCONS_00068814|organism=Clytia hemisphaerica|type=transcript|length=9858bp|location=Sequence derived from alignment at scaffold_49:835632..845489+ (Clytia hemisphaerica)
cttgttATGATACAATTTTGCAGTGGGAACATCTAGTTTTTTTTAAACGC
CTCGGTTTTCTTTTTATGGCTTAATTTGCTAGATCCttcaaaaaaaaggg
aaaaagtgGGAATCAAGAAAGATGTACCTAAAGATACTTCGTATATTGAG
AACGAAGTAAGATGtaggtaacctgataacagctggtcaTGATTTTCTTA
CTGGCACGGTAACCCTCTGAAGgcccttgaaaattaaccatctgaggaaa
atagtcttTCCGCGGTGAATTCTAcgacaagaatcttgttgtgcgccgga
aagtcaaaaactaaattttcctgatacggcgccctattttTAAACACTAT
CGCGcaacttttttttgtcattcccagtcctgtTAGACAAGCCAGTTGAA
GCGCGGTCCTCACAAATTCGtcatattgttttgttttcacccatctcttt
agagcttcagtgtGGCGGTGGGCAGAAACAATCTGATCTCAGTTTAGATG
TAGGTATCTATTCACCTATCAAGTGCCAAAATATGTGTTGAGACGTCAAG
AGTGTATTTTTCTTGATTGGGATGTGTACTCGCattataaataaacaaaa
attagaCAATAAGCCTTTTTCATAAATAGTTTTGAGTGCAACGAGTGCCT
CGTtctgaaaccattaccaaggtgattaaatctCTTGAGTCTTCGAATGT
TACTTTCATATATAGAGTAAACTTCTAATGGACTATTCTGGTGGNttatg
agcatgcatacatcgtaacttttttaatcgtagggcgagcttggttacaa
tagcatacttctcctgtttctttatacctccatggtgggaatcaatacac
tcttctcgagatgcataaatttattgttgtcctcgttttcaaacagattt
cattgctataaaataacacattcacaatgataattgtgttgttttcacct
catgagacattttgaatttcaagtacttttgttttagagttaatgtttgc
cttttggggatttaaattggtttaaatgtataatttcatagcaatgaaat
ctgtttgaaaacgaggacaacaataaatttatgcatctcgagaagagtgt
attaccatagcaatattttgaaaactaaGTGCTctcatgacgtaattttt
aaaaaggttttcgGGTCCTTCTTATATGTGTGAATACGTtggaaaactta
aaaaattacaTCTCAAAATCATTTGAACAAGAAATCTTCTTCCCTTATCA
GCTCGAGGGTAAATCTCTAAATATGTACATACAAATGATATAACGCCGTT
GACAAATCAAGAAGTCCAATCGTCCCAAATCATTGCCTGAGAAAACTAAG
AGTTTTTCTGTCTGTCTGagcataaattttgagattgaccctGTTTCATG
TATATGGGACCCTCCTCGCTATGTAAGATAAGCCAATGTCGAAATTAAGG
CTAGCTAGACAGAAAAACTCTTAGCTTTCTCAGACACTAATTTTGTGATT
TAATGGCGATATGCTTAGGACAGCCAATTTGTAATCTTGTTTACGATTCA
TTATACAATCTGCCCGTTGAGTCCCCAGTTTGAAAATAATCCTTCTAGTT
TAGTTGATTATCTAACAAGTATATTGTTCTGGCTCTAAATGGCCCTAAGT
AATTGTAAAGTTTATTGTTCTCGCTCTAAATGGCCCTAAATAACTTTAAT
AAGTTTATTTTACCAATACTAATTGGTCAAAGGTCGCCGCTATCCCCCAA
AAATTTACTTAGGGCACAGGGGATGTCAGAATATGAACCAAACTTCGGGc
cgattgattgattgattgattgattgattgattgattgattgattgattg
attgattgattgattgattgattgattgattgattgattgattgattgac
gtTTGCTCCGTCTTATGAATGTTAAATTTTCCTTGATTATACATAACGCT
CTTTTCATGAAACTTTTTGGGGGTCTTGCGAAAAACTAATAGAATTAAAT
ATAGGTTAGAAACCAagaaaaagaaatggaaaggTTTCCAGCAAGGTTGT
TTAAGTATTATCGACCTGAGGTTTTCATTAAGGGGAAATCtataaaaatg
tctttgttaCAGGGTCTCACCCGGTCTCAACAAAATAATGTGTATTTATT
AGACTATTTAATTAAGttttatgaaatttaacttCAGGTCTATTTTTTTA
CCAACCgtagtttttcctttttttatatcctttctatgctcaaacaaaat
ttcttctcttttttatagGTCCAGTACCTTTTTTTtgcttcttcattttt
agaaattatgatttttgttttttatataattattatggtttctctttttt
caattatatatttggatttcttaaactttttttgtatttgtttgTTTGGG
ATGTGGAATGGTGGAATGTTGATTTTTAAGTTGATGAAAACATAGCTATC
CGTGAAAAATACTGTAATATCTATACTCCAGAAAAAGTGAAATATCgaac
taccttattacacgaatattattAGACAAATactcaacggccttgaaatt
aacacgcaaaaaattagcacgacttttatttgctttttcaaggacaccac
ggctggttttaattaagggggtttttattaacacgaaatttttcaattcg
tgttaataaaatgactagcaatatttgtgtaataaggtaaatCATAACTT
TAAACAGTTGTACTATACTATTGGTAGCTTGTAGAAATGGGACTAAAACC
TACCAAAAAAGAAGGGGAAAATTTAAAGAATCAAGTGAAATATGGTACTG
GAACATCTGATTGTTTGATTTGGGATGGCACTGTGGACGGGGGTGATGTC
TTTACCGGAAAATCACGATCGGTCAAAACACCAGTGAGCACTTATTGGTA
ACCTTCGAAATGATTACATGGACATTAAGCTATAATTTAAAGGAAATTAT
TTAACGTCTCCAATCTCCAACGATTGCCTTActcagcatttttaaacaaa
aggaaGTACAAGTTTCTCCCCTTTTAGAGCCGAGCGAGCTTAATATTtaa
gaaattattttgtttattatgttttgtcagcataaagaaATTGGCTCAAA
GCGGAAGGAAAACACATTAAATAGATTTTGTTCCTGAAGCGAGGTTTTTT
AAAACCCACAGAGTTGAAATATAAATATATCAAATCATGCTTGATTAATT
GGTGATTTATTCTAACCAAGAAAACGTATTGTTTGCATCAGCAGAATTCC
GAATCATAAAATTCTGGATGATTGTCTTTCTTATCATTATGTATGGTTTT
ATCATAGATGTGCTCAAAAGTTGGCCTTACTAAAATCCGGTGTCTAGCCA
ACACATCCTCACACTTCTACTACCATACATACGTGTAGATATGTAAACAT
CCGAAAATCTACTATACTGGCAGTTACGGTAAATACTATATCTACCATTA
cagtaaaaataataatttagtAGATTTACGGATGTTTACATATGTATATA
CATATAGTAGAAATAAGCGCGAGATTGGCCTTGTGTAGCCCGGCACGTCT
ATCTGACGTTACAGGTTTACAATTATTTTCAGTTTGTAGTATGACATCGA
TCTCTAATCGATAACAGTGTAACTTCATACAGTGTGTAccaaaaaaagcg
gacaaatttttacaTACAGTAATAATCTCCAAAACTCATCATCTTAACTT
AGGGCTTAAAATGTTTGTAATaggatttaaattctttgttCAATCAATAG
GTACTATACTATAGGTATTCAATTTCCAAGAcgattgaataggtttttga
gGTTGAAATATTAAGTATTCAAGTCATAAAACTTTGTATAAATCATTAGG
GTtttactttatttaaaaaatgtgtccgctttttttgggacacactatAT
ATTGAAGACTAACAGACTGCCCACCCATCATTcagaagtaaaaaataatt
acctttttttatatacatttcAGGTGATGTCTTTAGGATCGGATATTTTA
CCCGAGTACCAAGTGGAATCTCCAAAAATCCACCCATGGACAATTCTCCA
TTACTCACCATTCAAAGCCATCTGGGATTGGGTGGTCTTATTTCTCGTCA
TGTATACCGCCATTATCACGCCCTACATGGCCGCCTTCGTATTAACCAGA
GATTCCAACGAGGAAACATTCGCGATGCATACATCTCATGCCGCTTCTGC
AATCACCATAGCTGATGATCCATTGGTCATCTTAGATTACATTGTTGATG
TCATGTTTATTATTGATATTTTCATCAACTTTCGAACGACTTTTGTTGAT
GTACATGACGAGGTTGTCAGTGATCCTTGTTTAGTTGCTATCCATTATAT
GAAGGGATGGTTTGTCGTTGACTTGTTAGCTGCCATACCCTTTGAGTTAC
TCATCATGATTGGAAATACTGATCAGGTATTAACAGTTTTTACATTGACT
AATTTTTACCTTCCATAAACTACTAAAAGTTGGAGGACTGTTTTACGTTC
TGCTTAAGCAAAGCATAAAATGATGGCTGCCATATTGATCTAGGCTATTT
ACTCGCGCCTTCAAGTCTATCAAAAATGAACCCCGGGCTGATGTGCCCGA
TTAAAGAGAGGAACGGATATTATGTTATAGAGTAAAATCCTCAAACCTCT
TTTTATCTCATCTGGCTTTAGAATAATGGGTTAGAAAACCTATAAGAATC
TAGAATTCCAGAAGGTCAGGCTGATCTAACAGGCTGCATACGTTACAAAG
ATTGAACTGAAccttttgaaaatatcttttctgCTTTCCTTTCAATGTta
agaaatttttactttattttatttattcataGACGACCACGTTGATCGGT
TTACTGAAGACGGCGCGTTTGCTACGTTTGGTTCGCGTCGCACGGAAGCT
AGACCGTTACTCAGAATACGGTACCGCCCTTCTCATGTTACTAATGTTTG
GTTTCGCCCTAGTGGCGCATTGGTTAGCCTGCGTGTGGTACGCCATTGGA
AATTTTGAACGCCATCAAGTCCAAGAAATGGGATGGCTTTATAAGTTAGG
TATCAATACAAATCAACCGTATAACCGGACAGATtctaacagtggaccgg
acattcAAACCAAGTATTTGACAGCTCTGTATTTTACATTATCAAGCTTG
ACAAGTGTTGGGTTTGGGAATGTATCAGCAAACACCAATAGCGAGAAGAT
ATTTACCATTGCTGTTATGCTAGTCGGAGGTTAGTATGTTAGTAATAACA
TTAAGTTGAAGGTCTTTTTTAGGACGTGTGACAAAGTTTTAGCGCTGCGA
AACCTACTTTTGTTTATGGTCTATTTCCATGTGCAAAGGGAAAGTTCACC
ACTTCCTTCAATTCTATCGGCCTATTTGAATGAAGAGTGTATTTCAGACA
CATTTTTGGGATTAGGTAAATGATTAGGACCCTTAAAAATTATTTGTAAC
ATGGATAAAATCGTAGACGATTTCCAAGCGTCTGGTTTGAAGATCAAGGA
ATTTAACTTAACATTGCTTCATTATTAGTTCTATACTTAGTTCTTAGCAG
TTAAAAGAATTACCCATGAAAACAGAATACATCAGACTATTGAAATGGGA
GCCATTCGGTAATTCTCGGTGAGATTTACGTGGTCGCACATTACAGTTTT
AAAGGTTAGTCTGATGTATTCTGTTTTNATTTAACTTAACATTGCTTCAT
TATAGTGACCTTTAAAACTGTAATGTGCGACCGCGTAAATCTCGCCGAGA
ATTACCGAATGGCTCCCATTTCAATAGTCTGATGTATTCTGTTTCCATGG
GTAATTCTTTTAACTGCTAAGAATTATAAAGTAAAAGACCTTGGTAAGAA
CGGGTCATGGATTTGTTACGACCCTTTCTTGGTGGCCTGGTGGCgcattt
caaatttgaatcCAAACATAGGCATAGGGGTACAAAACCTTTTGTTTTCA
TCTCGTCCGTGGTCGAAAGATgataagtctgcgaccgcagtcggagacga
ctaggggagggcgccactctttctccctggattgctcaacttacccttga
tccttcttttaattgctgagcatcaaccagagaggcatcaagtaccattt
taggaatctttggtatgacccggctggggttGAACCAACAACCTTGCGAa
acgtagccggatgctctaccactgcactacggtcgaaAGATGATAGTGAT
GATGATCAATGGCGTATCGGATAGTTGAATGACTAGAGAGCTAACAAACC
TAAAACTTCTACTTTCTACTTTCAGCATTGATGCATGCGGTTATCTTTGG
TAACGTCACGGCAATCATACAACGTTTATATTCGGGTATGGCCCATTACC
ATTCCACCATGAGACGTGTCCGTGAATTCATACGTTTCTATCAGATACCG
TCACCGTTGCGGCAACGGTTGGAAGATTATGCTCAATATGATTACTCCTA
TACTAACGGTATTGATATGAACGAGGTAAGCTATGCGATCGCCTTCTAGA
ATGACCGACGCGCTCAACAACATTTGCCCAACACCCATTTCAATAGCCGG
GTGGGAGGTGGAGCACTATTATGTCTctatgaataatttttttaactgcT
AAGTATATTTGTTATTGAAATTTGTGGTGATAATGTCTCACAATACTCAA
AGCATAGTCCTTAAGCAattccaaaataattattttgagtttttttaagg
tATACCAGATTAAAATGGTTGCGTCATTTGCTAATGTAACATTTTTGGAA
GTTGTGTTTGAATCCGAACATAAGggtacaaaatctttttttttcagatc
aTAAGAGCCAGTAGAGTCattcagattttttttgtaattagaaTTTATTA
TTGAGGTATTtctcaatagacgatatcggcttaacgtgaaaactcagatt
tgatccccgaatattgcccacaatgctttgtgcggaaaaattttcaccgt
gaacttttttccgcgcaaagcattgtgggcaatattcggggatcaaatct
gagttttcacgttaagccgatatcgtctattaagaAGGTTCCACCTGGGT
CTGTAATCACAGAAATGCTCAAATGGAATCTCTTTTTCTTTCCACTTATA
CAGGTTTTACGGAACTTTCCTGAAGGTTTACAAGCAGACATTTCGTTACA
CTTAAACCGTCATCTTTTGTCCAACAACTTGGCGTTCCGTGGTTGCACTC
CAGGTTGTTTGCGCTCGCTCTCCTTGAAGTTCAATACAACACATTGTCCA
CCGGGTGATTACATCATTCACTATGGTGACGAAATCAACAATTTGTACTG
GATCGGCCGTGGTACGGTAGAAGTTATACAGTGTGATAGTATTATCGCTA
TACTTGGTAAGCAACTTACTATAGTCTAAAACCTTTTAAAGATCtaaagt
ttgcgaccgcagtcgaagtagacctgaaggctcctctttcgatagctatc
tacccgaaggtagcgGATGGCGCCACCCTTGCTCCCTGGATTGCTTCACA
TGCCCTTGTTCCTTCCCTTAATTGCTGagtatcaagcagagaggcatcaa
gtaccatttttgtacTAAATGCAATAAAATTTCTGGTGTAGAGCAGCGAG
TTAACGGCTCCGTTTTTCGATTGACAATTGTAGTGGAGTTCCAcgaattc
gaacttctattattcgaatctttctctgataattcgaactaaaatattgg
tcccctcagctagaaAGTTGCTTtaatactctctgtaattctgaatcttt
ctctaattcgaagaaaaattctcggtcccttgaagatcgagtTAGAGAGA
AAGTTAACTGTATTTACATTGATGGATCGAAATTTTACATGTACCAAATT
GTAGTTTAAAACGCATTTAAAACATTTATTCTTAGGTAAAGAGGATTCAT
TTGGAGAGAACTTTGGCCTGACATACAATCGAGTAACTGGCAAAGCAAAA
GCCAGTATACGAGCCTTGACTTATTGTGATTTACATTCCATTTCCAAAGA
AAACCTCATGCATATTATGGCAGCTTATCCAGAATTTCGAAAAACTTTCA
ATGTGGATTTGCATATTACTTACGATTTGAGAGATTCACAGGTGATGGGA
TTTCATGTGTATCGTGGGATTGATTTGAACCCCgtttttttctcaacttc
agttgatgtagaatctgagaatgtctgtgtgtccTAAATCTAAAATGGTT
gggtttggctgaaattttgcacacttattCCTCgggtgaataaatatttt
tagggtgtttttttttcatttttcaaaatttttgatatttcggGCATGTG
GAAAAGTTTTCGTTAAAGTGAGACTAAAACTTTGGGTAacctggagactt
taaaaatggttggatttggcttaaattttgcacactaTTATTTCATACCA
CTTGCTTTAAAAAGTTGCGACCATTGTTAGGTTATTGCTTGACTTGACTT
GTCAATTTCAAATAGTTTAGTGCATAACTTTGAACCATTTTTCTCTCGTT
TCGTAGCTTGAAGAAAAAGATGTCAACAGCTCAATCTTCAATTCCTCACC
ATCATTCAACGCGCAACGTTTCTCGAATAACGTACGTACTACGCCTTTCG
ATCGTCTATCGCCTAGTTACAACGGCTCACCTTGCCGGACGTGTACTAGC
AGCGGCTTCACTAAATCAACTACGGAGTTTTCAAGCGATGAGCGACGTGC
AAGTAGACCTTTATTAGACTCGTTATCTGAAGAAGACCCATGCTCCTCCA
GCAGTTGTCAAAGTCGCATGACTAAAAATAAATGTCCAACATCTAATAAA
ATAGTTGATAGTTCTTTTATCGCGACGTCACCAGTAGCTATACGAAGAGA
TACACATCTTTCAGCTACGTCTCATCATAACGTTGCTGCAACGTCGTACC
ACGATGGATCTTGTACTTTAGAACTGAGACGAGAAGTTGAAGAGATGAGA
ACCCATTTATTCCGTATTGAAAGTCTTTTGAAACAAGACATGAAAAAAGT
TGTCGATTTGTTAGAAGAGAAAGTGACGTCAACATCTTCGACCACGCCCA
ATAAAACAAATAATGATagtaataataacaataatactTCTATCAAGAAC
AACAATACCCATAATGCAACAGTAGTCAAAAATAACAATAACCATACTTC
GATTCCATCTACAACGACATCCAATCACAACCATATCAAGGTTTTAACAA
CAGACAAAACTAAAATTAATTCTTCATCTTCAAACTCGAACAGGGTTAAG
AACCAATAGCAATAAACATGATGTTTCGGGgacaaaagaaataaagaaaa
aggaaataacCGAGACTTTTTAGGTGATTCACGGCAAAAAGTTGCAGTCG
TTTAATAATTCACAGTGAATAAAAGTTGACCTtctctaatttgacgttct
actattctaTCCGCTagattattcgataatattgaaagtcaccgacAACG
AAAAACTCTTATTAACGGTGCTCTGTTATTCAAATCCAAATCCGATTCTT
GAATTAGATTAGAATTGAATTAGAGAACGTCAAAAACTTTCCAATCTGGT
GGCAGCTTTTTTACCGTAAATTCAAAAGTCACAgcatatttttggttttt
cctgTAGAAATTTGTCAATATCTTTGATTTCAGTAAAGAGATAtttacgc
ttttttataagaatatactttataaaaatatttatgatgaaattggccaa
aaatcaagaatatactaagaatatcaccatcatggagtTTGGCAACCGAA
CTTAAGTCATCTTACCCCAGTTTCACCGTgataaattttatgaattttgt
gTATGATTCATTTTCTATATTGTCTATATTCCgaataaaaaaaacagtaa
GTGCAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042905XLOC_042905Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068814-exon-scaffold_49-1491911889:835632..835787TCONS_00068814-exon-scaffold_49-1491911889:835632..835787Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1510915933:835632..835787TCONS_00068814-exon-scaffold_49-1510915933:835632..835787Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1575043694:835632..835787TCONS_00068814-exon-scaffold_49-1575043694:835632..835787Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1491911889:839605..840057TCONS_00068814-exon-scaffold_49-1491911889:839605..840057Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1510915933:839605..840057TCONS_00068814-exon-scaffold_49-1510915933:839605..840057Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1575043694:839605..840057TCONS_00068814-exon-scaffold_49-1575043694:839605..840057Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1491911889:840464..840860TCONS_00068814-exon-scaffold_49-1491911889:840464..840860Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1510915933:840464..840860TCONS_00068814-exon-scaffold_49-1510915933:840464..840860Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1575043694:840464..840860TCONS_00068814-exon-scaffold_49-1575043694:840464..840860Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1491911889:841907..842106TCONS_00068814-exon-scaffold_49-1491911889:841907..842106Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1510915933:841907..842106TCONS_00068814-exon-scaffold_49-1510915933:841907..842106Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1575043694:841907..842106TCONS_00068814-exon-scaffold_49-1575043694:841907..842106Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1491911889:842735..842987TCONS_00068814-exon-scaffold_49-1491911889:842735..842987Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1510915933:842735..842987TCONS_00068814-exon-scaffold_49-1510915933:842735..842987Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1575043694:842735..842987TCONS_00068814-exon-scaffold_49-1575043694:842735..842987Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1491911889:843517..843722TCONS_00068814-exon-scaffold_49-1491911889:843517..843722Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1510915933:843517..843722TCONS_00068814-exon-scaffold_49-1510915933:843517..843722Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1575043694:843517..843722TCONS_00068814-exon-scaffold_49-1575043694:843517..843722Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1491911889:844138..845489TCONS_00068814-exon-scaffold_49-1491911889:844138..845489Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1510915933:844138..845489TCONS_00068814-exon-scaffold_49-1510915933:844138..845489Clytia hemisphaericaexon
TCONS_00068814-exon-scaffold_49-1575043694:844138..845489TCONS_00068814-exon-scaffold_49-1575043694:844138..845489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:835632..845489 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.437621	0	0.0791277	0	0.323686	0.201943	1.09187	1.99378	3.37425e-09	0	0.998617	1.93946e-05	0	0	0	0	0	0	0	0	0.264526	0	0	0	5.16069e-07	0	0	0.374817	0.70434	5.14351e-08
Blast
[Close]
BLAST of TCONS_00068814 vs. Swiss-Prot (Human)
Match: KCNH6 (Potassium voltage-gated channel subfamily H member 6 OS=Homo sapiens GN=KCNH6 PE=1 SV=1)

HSP 1 Score: 551.977 bits (1421), Expect = 3.803e-179
Identity = 304/504 (60.32%), Postives = 398/504 (78.97%), Query Frame = 1 
Query:  154 EVMSLGSDILPEYQVESPKIHPWTILHYSPFKAIWDWVVLFLVMYTAIITPYMAAFVLTRDSNEETFAMHTSHAASAITIADDPLVILDYXXXXXXXXXXXXNFRTTFVDVHDEVVSDPCLVAIHYMKGWFVVDLLAAIPFELLIMIGNTDQTTTLIGXXXXXXXXXXXXXXXXXDRYSEYXXXXXXXXXXXXXXVAHWLACVWYAIGNFERHQVQ-EMGWLYKLGINTNQPYNRTDSNSGPDIQTKYLTALYFTLSSLTSVGFGNVSANTNSEKIFTIAVMLVGALMHAVIFGNVTAIIQRLYSGMAHYHSTMRRVREFIRFYQIPSPLRQRLEDYAQYDYSYTNGIDMNEVLRNFPEGLQADIXXXXXXXXXXXXXAFRGCTPGCLRSLSLKFNTTHCPPGDYIIHYGDEINNLYWIGRGTVEVIQCDSIIAILGKEDSFGENFGLTYNRVTGKAKASIRALTYCDLHSISKENLMHIMAAYPEFRKTFNVDLHITYDLRDS 1662
            +V+SLG+D+LPEY++++P+IH WTILHYSPFKA+WDW++L LV+YTA+ TPY AAF+L+ D +E      +   A + T +  PL ++D IVD+MF++DI INFRTT+V+ +DEVVS P  +A+HY KGWF++D++AAIPF+LLI    +D+TTTLIGLLKTARLLRLVRVARKLDRYSEYG A+L LLM  FAL+AHWLAC+WYAIGN ER  ++ ++GWL  LG+   + YN +D  SGP +Q KY+TALYFT SSLTSVGFGNVS NTNSEK+F+I VML+G+LM+A IFGNV+AIIQRLYSG A YH+ M RV+EFIRF+QIP+PLRQRLE+Y Q+ +SYTNGIDMN VL+ FPE LQADI LHL+R LL +  AF G   GCLR+L++KF TTH PPGD ++H GD ++ LY+I RG++E+++ D ++AILGK D FGE   L  +   GK+ A +RALTYCDLH I + +L+ ++  YP F ++F   L +T++LRD+
Sbjct:  225 QVLSLGADVLPEYKLQAPRIHRWTILHYSPFKAVWDWLILLLVIYTAVFTPYSAAFLLS-DQDE------SRRGACSYTCS--PLTVVDLIVDIMFVVDIVINFRTTYVNTNDEVVSHPRRIAVHYFKGWFLIDMVAAIPFDLLIFRTGSDETTTLIGLLKTARLLRLVRVARKLDRYSEYGAAVLFLLMCTFALIAHWLACIWYAIGNVERPYLEHKIGWLDSLGVQLGKRYNGSDPASGPSVQDKYVTALYFTFSSLTSVGFGNVSPNTNSEKVFSICVMLIGSLMYASIFGNVSAIIQRLYSGTARYHTQMLRVKEFIRFHQIPNPLRQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLHRALLQHCPAFSGAGKGCLRALAVKFKTTHAPPGDTLVHLGDVLSTLYFISRGSIEILRDDVVVAILGKNDIFGEPVSL--HAQPGKSSADVRALTYCDLHKIQRADLLEVLDMYPAFAESFWSKLEVTFNLRDA 717
The following BLAST results are available for this feature:
BLAST of TCONS_00068814 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNH63.803e-17960.32Potassium voltage-gated channel subfamily H member... [more]
back to top