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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068808 ID=TCONS_00068808|Name=TCONS_00068808|organism=Clytia hemisphaerica|type=transcript|length=1663bp
GGGACCATTATCTTTTCatagaaaaaataacataatttaaaaaaaatgaa
gaaggaaaAATTAACAATAATTCTACAAGCgtaaaaatgagagaaaaaaa
agcaaattcaaaataaaaatcttgtTCTCCTATAATATACTAGTTTTTCA
TTCgattaaagatgaaaaaaaaaattcaaaaatattaacataTGGAAAAA
TTAACGATGGTTTATCTTGTCATTTGATACTGtgtaaatttcaaaatcaa
tcaGAAAGTTTGGGCATTAAAATTCTACTTTGCTACAAAATTAAacagaa
aaatctaaaaaaattctaagctataaaaaaaacttttggtgCATAATGTA
AATTATTGAAACACGTGTATTGATGAAGTTGACTGGTATTTTCTGTTTAA
TACCTAAGTAAGTTTATTCCtctggtggctgtcggtggagccgggagtga
gggagtctatatcaacgaagggctagaatcgaatctctaacctttctcag
gcaagaaaaagtgaagccttaaaatatgtgccgtatttttgacgacggat
tgaatccaGCCATTTCCTTGTTttcgcaactttggtaggatttgttggct
tcaaatcctaccaaggagattcgattctagcccttcgggcttttactTCA
TTTGGACtatatccccttttctatttgcgctataCCTAGGTATACCTCCA
AATGCTGAAGTGGAGCGCCTAGCTCTTAGTTACTTACCGCCCAGATCAGA
TTACCTTATCTAAGCTAAGTTGGCGGTGACTGGGGATCGAATCAACAACT
CTTAAGATCGTAAAGTGAATTCTCTACGGACTGAGCTACCCAGCAAAAAG
TTGAgataaacttttgaaaaagtccTAATTCACAAGAAAATTGATTCTGA
CCCTTAGAGGGATTTTTACAGAGATTCCCTCCAGATCAAGGGTatctgtt
tttcaaaaatcaagacTGTTTCAGTTTAGTTTGAAGGTGAATCACCGCAT
CGCCTTTTAATTCTAAACACAACCCCTTTGAATGACATGTAGAACAAAAA
CATTTGTTACTATTGTTACCAAAAGGTGAACCACCGTATAGCTTTTAATT
CTAAACACAATCCCTTTGAATGACATGCAGAACGAAAACATTTGTTACTT
GTTACCAATTTTAATCTAAATTTCTAAAACTGtatcaaatatcaaaaaac
atttaaaattcaCACTATATCCAATGGTTCTAGCGTGAACACCCCAATCA
ACATTACAACAGTAGTAAAGTTATCAATTATTGTTCATTCGAATATTATA
CAAATTTCAACTTTGCTCAACAAAGTCTGAAGAATCACCAAAAATTCACA
TTGAATCATACCTTACCAGGAAAATGATTCGGGAATTATTGTCACCAAGA
AAAGATATAGCCACAACCCCAGACTTTATTTTCCACAATAATGCAATGCA
ATATAGTCTTTGTTTCGTTTTGGCTTCTGCTATGCTTGATAAAGCTAACG
TTCCCTGGTACATTTGTATCGATCGATTGTCCCATTGCAAGTGAAACCAG
TTCCACTAATTCGGATCACCAATTAAGTACAAGGAGTCCCTTAATACGGC
GCTTTTCCGACGAGCATTTTTCACAATCTCATTGATATAAGCTTTCATTA
GTTTCGCAATTTC Run BLAST on NCBI transcript from alignment at scaffold_49:667200..668902+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068808 ID=TCONS_00068808|Name=TCONS_00068808|organism=Clytia hemisphaerica|type=transcript|length=1703bp|location=Sequence derived from alignment at scaffold_49:667200..668902+ (Clytia hemisphaerica)
GGGACCATTATCTTTTCatagaaaaaataacataatttaaaaaaaatgaa
gaaggaaaAATTAACAATAATTCTACAAGCgtaaaaatgagagaaaaaaa
agcaaattcaaaataaaaatcttgtTCTCCTATAATATACTAGTTTTTCA
TTCgattaaagatgaaaaaaaaaattcaaaaatattaacataTGGAAAAA
TTAACGATGGTTTATCTTGTCATTTGATACTGtgtaaatttcaaaatcaa
tcaGAAAGTTTGGGCATTAAAATTCTACTTTGCTACAAAATTAAacagaa
aaatctaaaaaaattctaagctataaaaaaaacttttggtgCATAATGTA
AATTATTGAAACACGTGTATTGATGAAGTTGACTGGTATTTTCTGTTTAA
TACCTAAGTAAGTTTATTCCtctggtggctgtcggtggagccgggagtga
gggagtctatatcaacgaagggctagaatcgaatctctaacctttctcag
gcaagaaaaagtgaagccttaaaatatgtgccgtatttttgacgacggat
tgaatccaGCCATTTCCTTGTTttcgcaactttggtaggatttgttggct
tcaaatcctaccaaggagattcgattctagcccttcgggcttttactTCA
TTTGGACtatatccccttttctatttgcgctataCCTAGGTATACCTCCA
AATGCTGAAGTGGAGCGCCTAGCTCTTAGTTACTTACCGCCCAGATCAGA
TTACCTTATCTAAGCTAAGTTGGCGGTGACTGGGGATCGAATCAACAACT
CTTAAGATCGTAAAGTGAATTCTCTACGGACTGAGCTACCCAGCAAAAAG
TTGAgataaacttttgaaaaagtccTAATTCACAAGAAAATTGATTCTGA
CCCTTAGAGGGATTTTTACAGAGATTCCCTCCAGATCAAGGGTatctgtt
tttcaaaaatcaagacTGTTTCAGTTTAGTTTGAAGGTGAATCACCGCAT
CGCCTTTTAATTCTAAACACAACCCCTTTGAATGACATGTAGAACAAAAA
CATTTGTTACTATTGTTACCAAAAGGTGAACCACCGTATAGCTTTTAATT
CTAAACACAATCCCTTTGAATGACATGCAGAACGAAAACATTTGTTACTT
GTTACCAATTTTAATCTAAATTTCTAAAACTGtatcaaatatcaaaaaac
atttaaaattcaCACTATATCCAATGGTTCTAGCGTGAACACCCCAATCA
ACATTACAACAGTAGTAAAGTTATCAATTATTGTTCATTCGAATATTATA
CAAATTTCAACTTTGCTCAACAAAGTCTGAAGAATCACCAAAAATTCACA
TTGAATCATGGATCAAAACAACAATAGACTAGCTTGTTTAGATTGACATA
CCTTACCAGGAAAATGATTCGGGAATTATTGTCACCAAGAAAAGATATAG
CCACAACCCCAGACTTTATTTTCCACAATAATGCAATGCAATATAGTCTT
TGTTTCGTTTTGGCTTCTGCTATGCTTGATAAAGCTAACGTTCCCTGGTA
CATTTGTATCGATCGATTGTCCCATTGCAAGTGAAACCAGTTCCACTAAT
TCGGATCACCAATTAAGTACAAGGAGTCCCTTAATACGGCGCTTTTCCGA
CGAGCATTTTTCACAATCTCATTGATATAAGCTTTCATTAGTTTCGCAAT
TTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068808-exon-scaffold_49-1491911889:667200..668556 | TCONS_00068808-exon-scaffold_49-1491911889:667200..668556 | Clytia hemisphaerica | exon |
| TCONS_00068808-exon-scaffold_49-1510915933:667200..668556 | TCONS_00068808-exon-scaffold_49-1510915933:667200..668556 | Clytia hemisphaerica | exon |
| TCONS_00068808-exon-scaffold_49-1575043694:667200..668556 | TCONS_00068808-exon-scaffold_49-1575043694:667200..668556 | Clytia hemisphaerica | exon |
| TCONS_00068808-exon-scaffold_49-1491911889:668597..668902 | TCONS_00068808-exon-scaffold_49-1491911889:668597..668902 | Clytia hemisphaerica | exon |
| TCONS_00068808-exon-scaffold_49-1510915933:668597..668902 | TCONS_00068808-exon-scaffold_49-1510915933:668597..668902 | Clytia hemisphaerica | exon |
| TCONS_00068808-exon-scaffold_49-1575043694:668597..668902 | TCONS_00068808-exon-scaffold_49-1575043694:668597..668902 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:667200..668902 + |
Blast
The following BLAST results are available for this feature:
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