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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068806 ID=TCONS_00068806|Name=TCONS_00068806|organism=Clytia hemisphaerica|type=transcript|length=1022bp
GGGTGTGAACATAAGAGTAATCAAATTGGTTCGTATTTTTCGtaataaaa
tttccataattctcaaataataacaataataataacaataatacaaAATA
TCACTGTGATAAAGTCATAAGTACTCGtatgttttcaaaaaacatcttcc
aaaatttaagaattatTTGTCCTTAGCGGCCACAACATGAAGGAGCACAT
GATGGCATACAAGCTGGCATAGGTGCTGCCATTTGTACTGGAGGTCGACA
ACATCCTGTTTGTTGGCAAGCTTGTGGACAAGATGCAGTTGGTTGTTGGG
AGATGATAGCCATCCAATGTAAGCAAATTGGAGCACATGGTCGAGCTGGG
GCACCTGGAGCTCCAGCTGGTCCCTGAGGTCCGCATGGTCCCATAGGTCC
TTGTGGTCCACCCATTCCCATTGGTCCCGCTGGACCCATTGGTCCTGGAA
CTCCTACTGCTCCAGTAGCTCCTTGTGCTCCGCATGGTCCCATTGCTCCA
CATGGAGCAGCTCCACCACAAGGGGCAGCCATCATCATAGGTGCTGCACA
GGGTGGAGCAGCGCAAGGGGCAGCCATTGGAGCGGCGCAGGGCGGGGCTG
CACAAGGGGCTGGACAAGGTGGAGCAGCGCAAGGGGCAGGCATCGCGGCC
GCGCATGGTGGGGCAGCGCAAGGGGCGGGCATTGGAGCGGCGCAGGGTGG
AGCAGCGCAAGGGGCGGGCATTGGAGCGGCACATGGTGGAGCAGCGCAAG
GGGCGGGCATTGGAGCGGCACAGGGTGGGGCAGCACATGGCATAGCTACA
GGCATGGGTGGTGGAGCAGCACAACATTGAGCACTGCAAGCTGGTGCACA
ATTTGGAGAGCACATGCCAGCACACATTTGACGCTTGGAAGCAGGTTTGG
ACTTTGAATCTTTGGTTTCTGTTGATGCTGGTTTTTCAACTGAAAGAAGA
TTTGTCgattaatttcaaaaagattattcaaattaatttttcatgagTTT
TAATAATGTCTCATAATAATTT Run BLAST on NCBI transcript from alignment at scaffold_49:602297..603357+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068806 ID=TCONS_00068806|Name=TCONS_00068806|organism=Clytia hemisphaerica|type=transcript|length=1061bp|location=Sequence derived from alignment at scaffold_49:602297..603357+ (Clytia hemisphaerica)
GGGTGTGAACATAAGAGTAATCAAATTGGTTCGTATTTTTCGtaataaaa
tttccataattctcaaataataacaataataataacaataatacaaAATA
TCACTGTGATAAAGTCATAAGTACTCGtatgttttcaaaaaacatcttcc
aaaatttaagaattatTTGTCCTTAGCGGCCACAACATGAAGGAGCACAT
GATGGCATACAAGCTGGCATAGGTGCTGCCATTTGTACTGGAGGTCGACA
ACATCCTGTTTGTTGGCAAGCTTGTGGACAAGATGCAGTTGGTTGTTGGG
AGATGATAGCCATCCAATGTAAGCAAATTGGAGCACATGGTCGAGCTGGG
GCACCTGGAGCTCCAGCTGGTCCCTGAGGTCCGCATGGTCCCATAGGTCC
TTGTGGTCCACCCATTCCCATTGGTCCCGCTGGACCCATTGGTCCTGGAA
CTCCTACTGCTCCAGTAGCTCCTTGTGCTCCGCATGGTCCCATTGCTCCA
CATGGAGCAGCTCCACCACAAGGGGCAGCCATCATCATAGGTGCTGCACA
GGGTGGAGCAGCGCAAGGGGCAGCCATTGGAGCGGCGCAGGGCGGGGCTG
CACAAGGGGCTGGACAAGGTGGAGCAGCGCAAGGGGCAGGCATCGGTGGT
GCGCAAGGTGGGGCAGCACAAGGAGCATACATAGCGGCCGCGCATGGTGG
GGCAGCGCAAGGGGCGGGCATTGGAGCGGCGCAGGGTGGAGCAGCGCAAG
GGGCGGGCATTGGAGCGGCACATGGTGGAGCAGCGCAAGGGGCGGGCATT
GGAGCGGCACAGGGTGGGGCAGCACATGGCATAGCTACAGGCATGGGTGG
TGGAGCAGCACAACATTGAGCACTGCAAGCTGGTGCACAATTTGGAGAGC
ACATGCCAGCACACATTTGACGCTTGGAAGCAGGTTTGGACTTTGAATCT
TTGGTTTCTGTTGATGCTGGTTTTTCAACTGAAAGAAGATTTGTCgatta
atttcaaaaagattattcaaattaatttttcatgagTTTTAATAATGTCT
CATAATAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068806-exon-scaffold_49-1491911889:602297..602941 | TCONS_00068806-exon-scaffold_49-1491911889:602297..602941 | Clytia hemisphaerica | exon |
| TCONS_00068806-exon-scaffold_49-1510915933:602297..602941 | TCONS_00068806-exon-scaffold_49-1510915933:602297..602941 | Clytia hemisphaerica | exon |
| TCONS_00068806-exon-scaffold_49-1575043694:602297..602941 | TCONS_00068806-exon-scaffold_49-1575043694:602297..602941 | Clytia hemisphaerica | exon |
| TCONS_00068806-exon-scaffold_49-1491911889:602981..603357 | TCONS_00068806-exon-scaffold_49-1491911889:602981..603357 | Clytia hemisphaerica | exon |
| TCONS_00068806-exon-scaffold_49-1510915933:602981..603357 | TCONS_00068806-exon-scaffold_49-1510915933:602981..603357 | Clytia hemisphaerica | exon |
| TCONS_00068806-exon-scaffold_49-1575043694:602981..603357 | TCONS_00068806-exon-scaffold_49-1575043694:602981..603357 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:602297..603357 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008160 | Collagen |
Blast
The following BLAST results are available for this feature:
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