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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068803 ID=TCONS_00068803|Name=TCONS_00068803|organism=Clytia hemisphaerica|type=transcript|length=2959bpRun BLAST on NCBI protein sequence of TCONS_00068803-protein >TCONS_00068803-protein ID=TCONS_00068803-protein|Name=TCONS_00068803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=795bp MDPNALIISGTSFAEQAIRYDQENNHEEAHSNYMKAAEAILKAIALDRSLRun BLAST on NCBI transcript from alignment at scaffold_49:577981..593666+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068803 ID=TCONS_00068803|Name=TCONS_00068803|organism=Clytia hemisphaerica|type=transcript|length=15686bp|location=Sequence derived from alignment at scaffold_49:577981..593666+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_49:577981..593666+ >TCONS_00068803 ID=TCONS_00068803|Name=TCONS_00068803|organism=Clytia hemisphaerica|type=CDS|length=54924bp|location=Sequence derived from alignment at scaffold_49:577981..593666+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068803 vs. Swiss-Prot (Human)
Match: CAN7 (Calpain-7 OS=Homo sapiens GN=CAPN7 PE=1 SV=1) HSP 1 Score: 748.429 bits (1931), Expect = 0.000e+0 Identity = 391/817 (47.86%), Postives = 526/817 (64.38%), Query Frame = 2
Query: 29 MDPNALIISGTSFAEQAIRYDQENNHEEAHSNYMXXXXXXXXXXXXDRSLDPLKVKALQYIERAELLQKILDDKGNTKDNSQAMSTTQNEKGLEQVEFLLIQAVSEDENGHVEEALSAYADTIELCLEKAKQPDMQHHKEKLNKWAMAALERAEEIKK---RKANKTSQGQAQPHVPS-----PDKLDIKKLRIGSVKNQNQSGPKKGGLTKPEIEVLRTTSFVNTNKYLPWMEMDLNERFAYKIPFSDPDGLLPLAPKQKSRLTDWVRPSDICQNPQMIYAVNSFSIKQTIVSDCSFVASLAISAAYERKFKNKILTNIIYPQDRDGNPMTNPCGKYMVKLWFNGVARKVVIDDRLPMGNRGELLCSFSQNKDEFWVSLLEKAYMKVMGGYDFPGSNSNIDLHALTGWIPERASLKSNE--IDHTILFERLTKGLAQGDVLITAATGPISELEASRAGLVPTHAYAVLDMKLVAGKRLCQLKNPWSHLRWKGNYSETDDEHWTPELERLLNYDRKKAALNDNGVFWINWESLRHFYDVMYMSWNPKLFPYRFTYHSKWKSADGPIKDAYNIGENPQYSLEIQSPDKEPTVWLLLTRHITDRDDFAENKEFITMHVFKSDGSRIYYPDE--KYLEGTKINSPHYLSKMK-PPRGTSKFTVAVSQYEKMHTIYYSIKVFSTAKFHMAPVPDIYSSKKRITCQWTSQTAGGS-RASPTYENNPKIPLELIADLPAHLLIKIEANRKFAAAVELRSAD--------GSFSKTSGDYRWGFVAFTLRDVKPGQYVIIPSTFSPGQEGPFFLEVQASCAFKM 2413
MD AL FA A++ D E + EA Y +AA+A++ A SL+ ++ K +Y+ER + L + K S ++++ LE+ FL+ QA EDE +VE+A+ Y + ++LCL+ + + + + KL + A AL+RAE + + + K S +P P P + R S + + T EIEVLRTTS +N +Y+P+M +DL ERFAY +PF D G LPL+PKQK+ + WVRP D+ NP MIY V+SFSIKQTIVSDCSFVASLAISAAYER+F K++T IIYPQ++DG P NPCGKYMVKL NGV RKV+IDD+LP+ ++GELLCS+S NK E WVSL+EKAYMKVMGGYDFPGSNSNIDLHALTGWIPER ++ S+ F L + +GDVLITA+TG ++E E + GLVPTHAYAVLD++ G R QLKNPWSHLRWKG YSE D ++WTPEL++ LN+D + A DNG+FWI+W+ L +YDV+Y+SWNP LF HS W + GP+KDAY++ NPQY LE+Q P VW+LL+RHITD+DDFA N+EFITM V+K+DG ++YYP + Y++G +INSPHYL+K+K GT FT+ VSQYEK +TI+Y+++V+S F + +P Y+ KRI +W+ Q+AGG T++NNP + P LLI++ R+++ E+ + G K+SGDYR GF L ++ G + IIPSTF P QEGPFFL+ + K+
Sbjct: 1 MDATALERDAVQFARLAVQRDHEGRYSEAVFYYKEAAQALIYAEMAGSSLENIQEKITEYLERVQALHSAVQSK------SADPLKSKHQLDLERAHFLVTQAFDEDEKENVEDAIELYTEAVDLCLKTSYETADKVLQNKLKQLARQALDRAEALSEPLTKPVGKISSTSVKPKPPPVRAHFPLGANPFLERPQSFISPQSCDAQGQRYTAEEIEVLRTTSKINGIEYVPFMNVDLRERFAYPMPFCDRWGKLPLSPKQKTTFSKWVRPEDLTNNPTMIYTVSSFSIKQTIVSDCSFVASLAISAAYERRFNKKLITGIIYPQNKDGEPEYNPCGKYMVKLHLNGVPRKVIIDDQLPVDHKGELLCSYSNNKSELWVSLIEKAYMKVMGGYDFPGSNSNIDLHALTGWIPERIAMHSDSQTFSKDNSFRMLYQRFHKGDVLITASTGMMTEAEGEKWGLVPTHAYAVLDIREFKGLRFIQLKNPWSHLRWKGRYSENDVKNWTPELQKYLNFDPRTAQKIDNGIFWISWDDLCQYYDVIYLSWNPGLFKESTCIHSTWDAKQGPVKDAYSLANNPQYKLEVQCPQGGAAVWVLLSRHITDKDDFANNREFITMVVYKTDGKKVYYPADPPPYIDGIRINSPHYLTKIKLTTPGTHTFTLVVSQYEKQNTIHYTVRVYSACSFTFSKIPSPYTLSKRINGKWSGQSAGGCGNFQETHKNNPIYQFHIEKTGP--LLIELRGPRQYSVGFEVVTVSTLGDPGPHGFLRKSSGDYRCGFCYLELENIPSGIFNIIPSTFLPKQEGPFFLDFNSIIPIKI 809 The following BLAST results are available for this feature:
BLAST of TCONS_00068803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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