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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068800 ID=TCONS_00068800|Name=TCONS_00068800|organism=Clytia hemisphaerica|type=transcript|length=985bp
ACGAAGTGTcttaaattatctgccattatgaagatgttccggaattaacc
aatcgggtttacaATCAAAATTCCTCTGGGGGTTAGCAAGCCTGGAAATG
TAAAGTTACTGTTTTTCCGGGAGTAAAATTAGCCATGAAATTATTCAAGC
AAGGAGCAGAAGCACGCCTTTACAAAGCTGACTTTTTGGGTAAGAAAGTC
ATTGTCAAAGAACGTTTTCAAAAGACATATCGACATCCACAATTAGATTT
GAAGCTAACTCAAAAAAGAacccttcaggaagctagagcAATATTACGAT
GCAGAAAAGCTGGAATAAGTACACCTTTGGTGTATTTCATTGaccataaa
aaacatcaaatttttatgGAGGAAATTCTTGACAGTTTGACACTCCGTGA
AAGAATAGACACACTTTTAAAGCTTAACACAGATGAAGCTAAATCACAAC
TTGTGTCAATGGCAAAAGCAATAGGAAAGATGATTGCTCATATTCACTCA
GTTGACATTATCCATGGAGATCTTACGACATCCAATATCCTTGTTACTTC
CAAGAATGATAAAGAAGATTATGTTCTTATTGACTTTGGATTAAGTAGTG
TTTCCAAATTTTCTGAAGATATGGGTGTTGATCTTTATGTACTGGAAAGA
GCATTTTTAAGCACACATCCAAACACAGAATGGCTCTTTGCTGAAATCTT
AGACAGTTACTTTAAATGTATTACTGACCCGAAAAGAAACAAAGAGATCA
TGGAAAAATTAGAAGAAATTAGAATGCGCGGCCGAAAACGAGTAATGATt
ggataagttttgatataataGTTTTTTTCTGCATTTTGTATATTCATAAG
CATCAGAAGATCATTTCATTATTGTTTGTAATGTGAATGTGTTTAtcatt
ttcaacctttttcttttcaatttgtaAAACATTTGTCATTGAtgagtcaa
tgcaatgacttccgaaatttttaagaatgttttac Run BLAST on NCBI transcript from alignment at scaffold_49:575074..577810+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068800 ID=TCONS_00068800|Name=TCONS_00068800|organism=Clytia hemisphaerica|type=transcript|length=2737bp|location=Sequence derived from alignment at scaffold_49:575074..577810+ (Clytia hemisphaerica)
ACGAAGTGTcttaaattatctgccattatgaagatgttccggaattaacc
aatcgggtttacaATCAAAATTCCTCTGGGGGTTAGCAAGCCTGGAAATG
TAAAGTTACTGTTTTTCCGGGAGTAAAATgtataaaagaaaattgaaacg
gtttatttttttcttcattatatttaagtttccattatcaaaattctaga
aatgcgaatttgtagaccatattagaaaatgtttaccgtcaactgctcca
acttgggactatcttacgcaacatgagacggccattccaccaccatttca
ccgaacttccaaagtcatttgatttgagtttaatgaaccgcatatagaaa
atacacgatttctctttcgcaccgagtgggcttttaaatcaaaatatgaa
aaaaatccgtagtagAACACGCGCGAGTGTccggaacgaagaagaccaaa
ttagtggcaaaacgatggagcgtttgacatcactcgcacgccaagttaca
cactcgctatTTGGTAATCCCATTGGGCGGTAGCCGGTTAAGCGacaggc
gttctctaattctccattcggcgtccggtcattttgaatgaaaacaaaac
ttaaaaagggcgcgctatcagtgaaagttatcaaaacaaatttgttgtca
aagagatttaacagtaagggAAAATACAGCTAGAATGCTCTTCACTTCAT
CCATAACATATTACAGAAATACATTGAAGAGCCTGGGACAATATACAGCC
TTGGTGGACACCAACATTGACTGCAAACTATTCATTTAATTTCCCTACAA
TTTGAAGAGCACATTCAGTTTGGTCATACATATTCTCTATGATGTTCACA
ATATTTCGATTGACACCAATTGATCTTAGTATTTTCCAAAATGCTTTCCT
CCAGACTGTATCGAAAGCAGCTTTGAAGTCTATGAAGTGaaaatttaaag
gctttttcaATCAACTGCCTAACAATGAAAACAACTGACATATAGACAGA
AATTACAGAGTCAAACACTACTTCTATAGGGTTTGTTAAAATCAGGTAAA
TTCAATTAGCATCTATCCTTTTTTGcatgttattttctttttaatgaaag
taaatctttttaatttattcaGTAGCCATGAAATTATTCAAGCAAGGAGC
AGAAGCACGCCTTTACAAAGCTGACTTTTTGGGTAAGAAAGTCATTGTCA
AAGAACGTTTTCAAAAGACATATCGACATCCACAATTAGATTTGAAGCTA
ACTCAAAAAAGAacccttcaggaagctagagcAATATTACGATGCAGAAA
AGCNcaggcgttctctaattctccattcggcgtccggtcattttgaatga
aaacaaaacttaaaaagggcgcgctatcagtgaaagttatcaaaacaaat
ttgttgtcaaagagatttaacagtaagggAAAATACAGCTAGAATGCTCT
TCACTTCATCCATAACATATTACAGAAATACATTGAAGAGCCTGGGACAA
TATACAGCCTTGGTGGACACCAACATTGACTGCAAACTATTCATTTAATT
TCCCTACAATTTGAAGAGCACATTCAGTTTGGTCATACATATTCTCTATG
ATGTTCACAATATTTCGATTGACACCAATTGATCTTAGTATTTTCCAAAA
TGCTTTCCTCCAGACTGTATCGAAAGCAGCTTTGAAGTCTATGAAGTGaa
aatttaaaggctttttcaATCAACTGCCTAACAATGAAAACAACTGACAT
ATAGGCAGAAATTACAGAGTCAAACACTACTTCTATAGGGTTTGTTAAAA
TCAGGTAAATTCAATTAGCATTTATCCTTTTTTGcatgttattttctttt
taatgaaagtaaatctttttaatttattcaGTAGCCATGAAATTATTCAA
GCAAGGAGCAGAAGCACGCCTTTACAAAGCTGACTTTTTGGGTAAGAAAG
TCATTGTCAAAGAACGTTTTCAAAAGACATATCGACATCCACAATTAGAT
TTGAAGCTAACTCAAAAAAGAacccttcaggaagctagagcAATATTACG
ATGCAGAAAAGCTGGAATAAGTACACCTTTGGTGTATTTCATTGaccata
aaaaacatcaaatttttatgGAGGAAATTCTTGACAGTTTGACACTCCGT
GAAAGAATAGACACACTTTTAAAGCTTAACACAGATGAAGCTAAATCACA
ACTTGTGTCAATGGCAAAAGCAATAGGAAAGATGATTGCTCATATTCACT
CAGTTGACATTATCCATGGAGATCTTACGACATCCAATATCCTTGTTACT
TCCAAGAATGATAAAGAAGATTATGTTCTTATTGACTTTGGATTAAGTAG
TGTTTCCAAATTTTCTGAAGATATGGGTGTTGATCTTTATGTACTGGAAA
GAGCATTTTTAAGCACACATCCAAACACAGAATGGCTCTTTGCTGAAATC
TTAGACAGTTACTTTAAATGTATTACTGACCCGAAAAGAAACAAAGAGAT
CATGGAAAAATTAGAAGAAATTAGAATGCGCGGCCGAAAACGAGTAATGA
TtggataagttttgatataataGTTTTTTTCTGCATTTTGTATATTCATA
AGCATCAGAAGATCATTTCATTATTGTTTGTAATGTGAATGTGTTTAtca
ttttcaacctttttcttttcaatttgtaAAACATTTGTCATTGAtgagtc
aatgcaatgacttccgaaatttttaagaatgttttac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068800-exon-scaffold_49-1491911889:575074..575202 | TCONS_00068800-exon-scaffold_49-1491911889:575074..575202 | Clytia hemisphaerica | exon |
| TCONS_00068800-exon-scaffold_49-1510915933:575074..575202 | TCONS_00068800-exon-scaffold_49-1510915933:575074..575202 | Clytia hemisphaerica | exon |
| TCONS_00068800-exon-scaffold_49-1575043694:575074..575202 | TCONS_00068800-exon-scaffold_49-1575043694:575074..575202 | Clytia hemisphaerica | exon |
| TCONS_00068800-exon-scaffold_49-1491911889:576955..577810 | TCONS_00068800-exon-scaffold_49-1491911889:576955..577810 | Clytia hemisphaerica | exon |
| TCONS_00068800-exon-scaffold_49-1510915933:576955..577810 | TCONS_00068800-exon-scaffold_49-1510915933:576955..577810 | Clytia hemisphaerica | exon |
| TCONS_00068800-exon-scaffold_49-1575043694:576955..577810 | TCONS_00068800-exon-scaffold_49-1575043694:576955..577810 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:575074..577810 + |
Blast
BLAST of TCONS_00068800 vs. Swiss-Prot (Human)
Match: PRPK (TP53-regulating kinase OS=Homo sapiens GN=TP53RK PE=1 SV=2) HSP 1 Score: 241.506 bits (615), Expect = 1.496e-77 Identity = 112/224 (50.00%), Postives = 166/224 (74.11%), Query Frame = 3
Query: 132 AMKLFKQGAEARLYKADFLGKKVIVKERFQKTYRHPQLDLKLTQKRTLQEARAILRCRKAGISTPLVYFIDHKKHQIFMEEILDSLTLRERIDTLLKLNTDEAKSQLVSMAKAIGKMIAHIHSVDIIHGDLTTSNILVTSKNDKEDYVLIDFGLSSVSKFSEDMGVDLYVLERAFLSTHPNTEWLFAEILDSYFKCITDPKRNKEIMEKLEEIRMRGRKRVMIG 803
++L KQGAEAR+++ F G+ ++K RF K YRHP L+ +L ++RT+QEARA+LRCR+AGIS P+V+F+D+ + ++MEEI S+T+R+ I + ++ T++ L ++AK IG+++A +H D+IHGDLTTSN+L+ ++ + VLIDFGLS +S ED GVDLYVLE+AFLSTHPNTE +F L SY T K+ + +++KL+E+R+RGRKR M+G
Sbjct: 35 GLELVKQGAEARVFRGRFQGRAAVIKHRFPKGYRHPALEARLGRRRTVQEARALLRCRRAGISAPVVFFVDYASNCLYMEEIEGSVTVRDYIQSTME--TEKTPQGLSNLAKTIGQVLARMHDEDLIHGDLTTSNMLLKPPLEQLNIVLIDFGLSFISALPEDKGVDLYVLEKAFLSTHPNTETVFEAFLKSY---STSSKKARPVLKKLDEVRLRGRKRSMVG 253
The following BLAST results are available for this feature:
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