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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068798 ID=TCONS_00068798|Name=TCONS_00068798|organism=Clytia hemisphaerica|type=transcript|length=2389bp
TTTCTTTACTTCTAAAAATAGGTTCAAAATCGAAAGTCAGTACACAGTAC
TTTCttaatatcttttaaggctcagattttcagcctcgtgttcttataaa
aaacgcatAGTAAAGGGTGACAGATAAAAAAAGGGAATAAGAGAAGATAC
AGACTGATTGTGAAGATTTTACAGTTTTCCATCCAATGATGTTTCCTAAA
GTTTTTATCCACAAGAaataaaaatgtcataaaataaTATATGTACAGAA
CTAAATAAAACATGGTACAATGTTGAATGTGTAAGCCTAATATAAAATCA
CCGTGTTACAAATTTCCTGGTGCGTGGAAAAATCACGCacataaataaat
tttatttatctGTCCCATAAATTGAACTAATGATTTTCCTTTTTGGCATT
AAAAACACTCTACattaaatatatgttttatacGTTTAGAAACTCAGTCC
TAgtttaaagaaaatataatataaaaagaagaactttcttCATGATAAAA
GCCtaaattttgatcattttttctttcagttcatTATTTTCTTGCAATAA
TCTCTGATTTTCATCTTGTAATTGTTGAACATCTTGCAATCTATTGTTCT
TTAATTTGACCTCtctttcaaggttttcaatACGTTGTTCTAGATCATAA
CAATTCTTTATCAAGTCTTCTTTTGTGTAAGAGTTTAGAGTATCAATATG
AACACGTTCGTAAAATTCATCAAAGTCTTTCTCGAAATATTCATCACTTG
AAGCACATGAGCTACAACTTTCATCATTGTCATCATTGTCCTTTCCATTT
CCCTCTACACTGCTAGTACTAGAATGATGATGGTGttgttggaaattttc
atccccaggATTGTGCTCCTCCATCAAAAATTGTGTGGTGTTGTAAGGTG
CAATTGGGCGACCTTTTTGAGCAACAAGTTCCTCCCTTTTTCGAACAGCT
TTGACTGCATCTTTTTCGTCAAGCTTTCTCTTCTCATCCCATGTGAGTTT
GTTGTAGGGTTTGTACTTGTTCCTGTGCTTCTTCTTGGCTCCTCTTCGAT
GCTTCTTCTTTGGTTTGCCTTTGACTTGTGAACTGTTTCCATTCTGCTGG
CGCTCgctgttttgttgttgtttttttcgagGACTCTGTTCCAGACCTCC
ATTCGGAGACGCATCCTCGACGTTTTCTGTTTTTAATGGaccatttttca
acttttctggGGACTCCAGATTAGAAATTTCAACTTCCATATCAAATTAG
TAGCGAATAAAGtttaaaatctcaatttttcttctttaaaaagcaaaaaa
agtaatgTATTCACGATTTTAAAATAACGACGTCTGGTTTTCGACCTTGC
AAAACATTGACTGACTTTTCGACGCAAAGCTTCCCAAACTTTGGATGAGG
TTTTGGTCACGTGATAAAAGCAATCATTTTGATTGGCTTTATATGTTGTT
TAACAATAGCGCACGACTTTGAACCTCTGGATAGCGGTCTTTCCTTTAAC
AAACATGGTGGACTTTTTTATAAACAACAAGAGTAGCCATGAAATTATTC
AAGCAAGGAGCAGAAGCACGCCTTTACAAAGCTGACTTTTTGGGTAAGAA
AGTCATTGTCAAAGAACGTTTTCAAAAGACATATCGACATCCACAATTAG
ATTTGAAGCTAACTCAAAAAAGAacccttcaggaagctagagcAATATTA
CGATGCAGAAAAGCTGGAATAAGTACACCTTTGGTGTATTTCATTGacca
taaaaaacatcaaatttttatgGAGGAAATTCTTGACAGTTTGACACTCC
GTGAAAGAATAGACACACTTTTAAAGCTTAACACAGATGAAGCTAAATCA
CAACTTGTGTCAATGGCAAAAGCAATAGGAAAGATGATTGCTCATATTCA
CTCAGTTGACATTATCCATGGAGATCTTACGACATCCAATATCCTTGTTA
CTTCCAAGAATGATAAAGAAGATTATGTTCTTATTGACTTTGGATTAAGT
AGTGTTTCCAAATTTTCTGAAGATATGGGTGTTGATCTTTATGTACTGGA
AAGAGCATTTTTAAGCACACATCCAAACACAGAATGGCTCTTTGCTGAAA
TCTTAGACAGTTACTTTAAATGTATTACTGACCCGAAAAGAAACAAAGAG
ATCATGGAAAAATTAGAAGAAATTAGAATGCGCGGCCGAAAACGAGTAAT
GATtggataagttttgatataataGTTTTTTTCTGCATTTTGTATATTCA
TAAGCATCAGAAGATCATTTCATTATTGTTTGTAATGTGAATGTGTTTAt
cattttcaacctttttcttttcaatttgtaAAACATTTGTCATTGAtgag
tcaatgcaatgacttccgaaatttttaagaatgttttac Run BLAST on NCBI transcript from alignment at scaffold_49:565058..577810+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068798 ID=TCONS_00068798|Name=TCONS_00068798|organism=Clytia hemisphaerica|type=transcript|length=12753bp|location=Sequence derived from alignment at scaffold_49:565058..577810+ (Clytia hemisphaerica)
TTTCTTTACTTCTAAAAATAGGTTCAAAATCGAAAGTCAGTACACAGTAC
TTTCttaatatcttttaaggctcagattttcagcctcgtgttcttataaa
aaacgcatAGTAAAGGGTGACAGATAAAAAAAGGGAATAAGAGAAGATAC
AGACTGATTGTGAAGATTTTACAGTTTTCCATCCAATGATGTTTCCTAAA
GTTTTTATCCACAAGAaataaaaatgtcataaaataaTATATGTACAGAA
CTAAATAAAACATGGTACAATGTTGAATGTGTAAGCCTAATATAAAATCA
CCGTGTTACAAATTTCCTGGTGCGTGGAAAAATCACGCacataaataaat
tttatttatctGTCCCATAAATTGAACTAATGATTTTCCTTTTTGGCATT
AAAAACACTCTACattaaatatatgttttatacGTTTAGAAACTCAGTCC
TAgtttaaagaaaatataatataaaaagaagaactttcttCATGATAAAA
GCCtaaattttgatcattttttctttcagttcatTATTTTCTTGCAATAA
TCTCTGATTTTCATCTTGTAATTGTTGAACATCTTGCAATCTATTGTTCT
TTAATTTGACCTCtctttcaaggttttcaatACGTTGTTCTAGATCATAA
CAATTCTTTATCAAGTCTTCTTTTGTGTAAGAGTTTAGAGTATCAATATG
AACACGTTCGTAAAATTCATCAAAGTCTTTCTCGAAATATTCATCACTTG
AAGCACATGAGCTACAACTTTCATCATTGTCATCATTGTCCTTTCCATTT
CCCTCTACACTGCTAGTACTAGAATGATGATGGTGttgttggaaattttc
atccccaggATTGTGCTCCTCCATCAAAAATTGTGTGGTGTTGTAAGGTG
CAATTGGGCGACCTTTTTGAGCAACAAGTTCCTCCCTTTTTCGAACAGCT
TTGACTGCATCTTTTTCGTCAAGCTTTCTCTTCTCATCCCATGTGAGTTT
GTTGTAGGGTTTGTACTTGTTCCTGTGCTTCTTCTTGGCTCCTCTTCGAT
GCTTCTTCTTTGGTTTGCCTTTGACTTGTGAACTGTTTCCATTCTGCTGG
CGCTCgctgttttgttgttgtttttttcgagGACTCTGTTCCAGACCTCC
ATTCGGAGACGCATCCTCGACGTTTTCTGTTTTTAATGGaccatttttca
acttttctggGGACTCCAGATTAGAAATTTCAACTTCCATATCAAATTAG
TAGCGAATAAAGtttaaaatctcaatttttcttctttaaaaagcaaaaaa
agtaatgTATTCACGATTTTAAAATAACGACGTCTGGTTTTCGACCTTGC
AAAACATTGACTGACTTTTCGACGCAAAGCTTCCCAAACTTTGGATGAGG
TTTTGGTCACGTGATAAAAGCAATCATTTTGATTGGCTTTATATGTTGTT
TAACAATAGCGCACGACTTTGAACCTCTGGATAGCGGTCTTTCCTTTAAC
AAACATGGTGGACTTTTTTATAAACAACAAGAGGCTCCTGTGGCTGGTCA
CCCAGGCATCTTGTTAAATCCTGAAGAACAGTTGTGCATGACAGAACTTG
GGTTCACATGTGCAGCTGACCAGGTATAGTTTTTCTACTTTTCGTCCTGC
TTTCTTCCAAGAGATTTCCCAGCACCTCACAAATAAGGAACCCTGGTTTG
TGTCACGTATTTGATTTCTTGGATCCATGGCTACTATTAAACCAACGGAT
GAAATTGAACCAGAAGGGGAACCAAATGAAGACGTACAGATTTGGAAACG
AATAGTAACAGAACTATCACTTCAAGCACCGGATCCCCAGATCAAATCTT
GTCTTCAATTGTACAATCCAGAGAAACCTACAAAATCCATTATCactagg
accctgccgacgcaccggacttatcGAACActggacacgcgaaagtccgg
tgtaaaatgagaattttttttaccaccggacaatctctacaccggactta
agaaaGTCGTATGCCCGGTGTTAGAGAAGGATAtcttttccaccggacaa
tcaaaacaccactgacatgaccagtccggtgcgtccggtgtttcttaatt
ttttgtttcataaatgtccggtgtccaaaattccctgtatgcaacaccgg
actgacaccggacttattgcgtccggtgtagcgaaaggatactttttgcc
accggacaaatacacgggacagtccggtgcgtcggcagggtcctttaTCG
CTACACTGAGAcaccaaaagtttcaaaaaagacaCAATTCACGACACACt
tggcggtcatcgaaaaattgttctattcgcgtctcccgcccgcatcaaat
tttccgctgattttctggtgcggagatgcggaaaaaaatctgggaaaagc
aatttgttcttttaaagtatagcttttttctcaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNcttttaaagtatagcttttttct
caattgctctgacgaccatcgaaaaattgttttgctcgcgttaccacccg
cccctgagttactggcatgattaaaaaaaacctgggaatgtttttgaccg
cccgtccgtccgtatgcatttttaacacccgttgcaacgcgaacagagca
ttttttcgatgaccgccctTAACTTCCTGTCAAAGCAGGAAGTTGAATCT
GCTAACAAGAATGAACTTGTCCGAAAGCTCTGCCTCAaagtcaaaagctt
ttttccAGATGTATGCCAGATCTGCAACATGTCCTATGTTATCAAACTCA
ATGATGAACCCTTTCTCCAGTGTGCATCATGTGGTCAAGAAgtatagtca
tctggggtaattacgggacagtTAAAATTAAGGGGTAAATATGGGACACC
CCTAAAGATGGTGTTATTGTTATAAATTTGGATTCAGATGGGGAGGATTT
TGGAGATAGTCATTCTAGCTGCTAGAAAAATGTCTAGCTAGATTATTcta
atatatacttttgatgtttcaacaaaagtttcatatgtcaccataaaaat
caattttcgtagTTTTAGAAGGAACTTTTCAAGCTTTAGTGTCAGGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGTAATACATCTTATGTAAAGGTCATACTTTga
caaataaaatatcaaaagatcggatctctaggattaatactttcagagtg
atgcccaaataagtcaaaatcatcccgtaattaccccagatgactatacA
CCGAGAGtgctaccgtgagattgggtaacttgcatcagtggaggctaaca
tgcataaccctcaaatgaaagacctggctggtcattaaaatacaactacg
cagctccgctcgcagctctagtctaccatttttgctttgatttaaccttg
tattttaatgaccagccaggtctttcatttgagggctatgcatgttagcc
tccattgatgcaagttacccaatctcacggtacctgAATCTTTTGAAAGA
TATGAACCTAGTTGATCATAACGAGGCAATACGCGATAcacttttcaaaa
ttccagGCATGATCTTCCTGTGTCAATCCTGCCAAGATAACACGTGTGTC
TTTCACCCATGATGGTAACACACCGAATCCACTAAACAAAACACCAAGAT
CAACTGAATCCCAGGACAAATCTACTTGGAGTGTAGTAGATGAGGACGAT
GAGATCAATGCACCAATGACAGAAGACGATACTTCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGGCGGACCAC
CAAATGAAATCAACttgaacaacagcaacaacgaTCACGCCCAATATCCT
GGATCAAGATCTCAGACCAAATCAAAGACAAAATGATCAAATATGTCGCT
TCTACATAAAAGGAAAATGTAAATATGGACTGAAAGGCCGAGACTGTCGA
TTTATCCATCCTAGAGCCTgtacaaaattgctcaaatatgGCAACAAACA
ACCAAGAGGCTGCAACCTAGGTACCAAGTGCCAAAGCTTCCACCCGAGGA
TGTGCTCATCATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNACTGCAAATTCACGCATGTTAAGGGAACCAAACGA
TAtcagaaaaagcaaaacaatcgtAATGATGAACCTCAGGATTTTCTCGC
AATCCTGGACAACTTTCGCGCAGAAATAATCTCTCTTATGAACAATTGTT
TCAGCAACCAAAACCAACAAATACAATTCAGGAACCACGATTTGTCACAT
CAACCTCAACAAACATTCAATCGTCAACATCCCCTACATCATCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatcaaaaaaa
tttaatattcttCTCTGTGTTATCTACAGACAACCCAACAATCCAGACCA
CAAATCTGAAGCACCTGAATTACAAGAACTCCTTTCTGCAATGATAGGAA
AAATTGATAGTATTACTGATTGTACACCTGACACATACATCCTTGGGGAT
CTTAACATACCACACACACCTCTTAATGATGAGACTTCAACCCCAACACG
AAATTGCAATAAACAGCTTCTGgacgttttaaatgtttttaaagcaGACT
TGCACATTAATCAACTGATACACAAATCAACACACCGTGATGGTAATATT
TTAGACTTTCTATTCACAAACAACACAGACAAGGTATTTAATTACACAGG
CTCACCTACTATTTATTCAGATCATCTTGTTGTAGATGTTACAACACATC
TGAATTTTGATAATCAATTCGGAGAAACTGAAGAACGTAACTTAATAAGC
AAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTGACTcgaattcaattgttgaaa
tggtcaaacaccggaccccacgggttgagtgagcagagaatttgctgaaa
cacatcaaaggtaatcaaaggtAAAGGTAGGTAAGGTAAAACGTTTGAAA
ATTGTTAAGTTTGCATTAtgaaccttcaaaatttatcactTTCTTTTCGA
AATCTGAAAGCTCTGTCACTAAGTAAATAGTATTTTATCCAATTCCAAAT
TGAATTATCCTATTTATTCCGATATCACAAGCCATTCcagttcttttctt
ttttgtcttcTTTCCTCTCCttgaattctttttttgcaGTCCTGTCTTTT
CCATATATTTTCAGCCTGAATATCCTATGGTCTAAAGTAAAGAAtgatta
caaaaatgttttacttaagaccaaaatttgggaaagtcTTGTGTTGGGGT
AGAGGGGGGGGTGCCCCCAGCCAGGTGCACGGAACGCCaaactttttcac
ttttctcacttggtttttacataaatcctttttgaccatctcGTAGACAA
GCTTGAAGTCCTTCGTTCtgttttttcactttatttgaaagcttccttct
tggaataataagtcGTTAAAGCGCTAGCGCTAtggaccttttttcaaaga
ggcaaccctgttgaataattatgtagtccagccatacaaacaatgataca
gcaatgcataattactgtttcatgcatattgtaataNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcatgcatattgtaa
taattatgcatgggtgtatcattgtttttctgctggactacataattatt
caacagggtggcctctttgaaaaaaggtctattcggaCCCAGTCTGTGAA
CAAGGCAGGAACCAGTGCACGAACActcttttgaaagaaagaatTAGAGC
TCCACTCGCAggtactgtcaactgctctaaagtggtcctaaatccgacag
ccctaaGCTAAATCCAATGGGCAGTGTGGCTAGAATCCTTCAGATCCTTg
tttagaaaaagctatacctgtttacttttttcttgccagattcaacaagc
catcaaccaacaaaattataCCACTGACATCTAAAAATTCACACGACCTT
TCCACAGTGGAGTAAGACGAAGTGTcttaaattatctgccattatgaaga
tgttccggaattaaccaatcgggtttacaATCAAAATTCCTCTGGGGGTT
AGCAAGCCTGGAAATGTAAAGTTACTGTTTTTCCGGGAGTAAAATgtata
aaagaaaattgaaacggtttatttttttcttcattatatttaagtttcca
ttatcaaaattctagaaatgcgaatttgtagaccatattagaaaatgttt
accgtcaactgctccaacttgggactatcttacgcaacatgagacggcca
ttccaccaccatttcaccgaacttccaaagtcatttgatttgagtttaat
gaaccgcatatagaaaatacacgatttctctttcgcaccgagtgggcttt
taaatcaaaatatgaaaaaaatccgtagtagAACACGCGCGAGTGTccgg
aacgaagaagaccaaattagtggcaaaacgatggagcgtttgacatcact
cgcacgccaagttacacactcgctatTTGGTAATCCCATTGGGCGGTAGC
CGGTTAAGCGacaggcgttctctaattctccattcggcgtccggtcattt
tgaatgaaaacaaaacttaaaaagggcgcgctatcagtgaaagttatcaa
aacaaatttgttgtcaaagagatttaacagtaagggAAAATACAGCTAGA
ATGCTCTTCACTTCATCCATAACATATTACAGAAATACATTGAAGAGCCT
GGGACAATATACAGCCTTGGTGGACACCAACATTGACTGCAAACTATTCA
TTTAATTTCCCTACAATTTGAAGAGCACATTCAGTTTGGTCATACATATT
CTCTATGATGTTCACAATATTTCGATTGACACCAATTGATCTTAGTATTT
TCCAAAATGCTTTCCTCCAGACTGTATCGAAAGCAGCTTTGAAGTCTATG
AAGTGaaaatttaaaggctttttcaATCAACTGCCTAACAATGAAAACAA
CTGACATATAGACAGAAATTACAGAGTCAAACACTACTTCTATAGGGTTT
GTTAAAATCAGGTAAATTCAATTAGCATCTATCCTTTTTTGcatgttatt
ttctttttaatgaaagtaaatctttttaatttattcaGTAGCCATGAAAT
TATTCAAGCAAGGAGCAGAAGCACGCCTTTACAAAGCTGACTTTTTGGGT
AAGAAAGTCATTGTCAAAGAACGTTTTCAAAAGACATATCGACATCCACA
ATTAGATTTGAAGCTAACTCAAAAAAGAacccttcaggaagctagagcAA
TATTACGATGCAGAAAAGCNcaggcgttctctaattctccattcggcgtc
cggtcattttgaatgaaaacaaaacttaaaaagggcgcgctatcagtgaa
agttatcaaaacaaatttgttgtcaaagagatttaacagtaagggAAAAT
ACAGCTAGAATGCTCTTCACTTCATCCATAACATATTACAGAAATACATT
GAAGAGCCTGGGACAATATACAGCCTTGGTGGACACCAACATTGACTGCA
AACTATTCATTTAATTTCCCTACAATTTGAAGAGCACATTCAGTTTGGTC
ATACATATTCTCTATGATGTTCACAATATTTCGATTGACACCAATTGATC
TTAGTATTTTCCAAAATGCTTTCCTCCAGACTGTATCGAAAGCAGCTTTG
AAGTCTATGAAGTGaaaatttaaaggctttttcaATCAACTGCCTAACAA
TGAAAACAACTGACATATAGGCAGAAATTACAGAGTCAAACACTACTTCT
ATAGGGTTTGTTAAAATCAGGTAAATTCAATTAGCATTTATCCTTTTTTG
catgttattttctttttaatgaaagtaaatctttttaatttattcaGTAG
CCATGAAATTATTCAAGCAAGGAGCAGAAGCACGCCTTTACAAAGCTGAC
TTTTTGGGTAAGAAAGTCATTGTCAAAGAACGTTTTCAAAAGACATATCG
ACATCCACAATTAGATTTGAAGCTAACTCAAAAAAGAacccttcaggaag
ctagagcAATATTACGATGCAGAAAAGCTGGAATAAGTACACCTTTGGTG
TATTTCATTGaccataaaaaacatcaaatttttatgGAGGAAATTCTTGA
CAGTTTGACACTCCGTGAAAGAATAGACACACTTTTAAAGCTTAACACAG
ATGAAGCTAAATCACAACTTGTGTCAATGGCAAAAGCAATAGGAAAGATG
ATTGCTCATATTCACTCAGTTGACATTATCCATGGAGATCTTACGACATC
CAATATCCTTGTTACTTCCAAGAATGATAAAGAAGATTATGTTCTTATTG
ACTTTGGATTAAGTAGTGTTTCCAAATTTTCTGAAGATATGGGTGTTGAT
CTTTATGTACTGGAAAGAGCATTTTTAAGCACACATCCAAACACAGAATG
GCTCTTTGCTGAAATCTTAGACAGTTACTTTAAATGTATTACTGACCCGA
AAAGAAACAAAGAGATCATGGAAAAATTAGAAGAAATTAGAATGCGCGGC
CGAAAACGAGTAATGATtggataagttttgatataataGTTTTTTTCTGC
ATTTTGTATATTCATAAGCATCAGAAGATCATTTCATTATTGTTTGTAAT
GTGAATGTGTTTAtcattttcaacctttttcttttcaatttgtaAAACAT
TTGTCATTGAtgagtcaatgcaatgacttccgaaatttttaagaatgttt
tac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068798-exon-scaffold_49-1491911889:565058..566590 | TCONS_00068798-exon-scaffold_49-1491911889:565058..566590 | Clytia hemisphaerica | exon |
| TCONS_00068798-exon-scaffold_49-1510915933:565058..566590 | TCONS_00068798-exon-scaffold_49-1510915933:565058..566590 | Clytia hemisphaerica | exon |
| TCONS_00068798-exon-scaffold_49-1575043694:565058..566590 | TCONS_00068798-exon-scaffold_49-1575043694:565058..566590 | Clytia hemisphaerica | exon |
| TCONS_00068798-exon-scaffold_49-1491911889:576955..577810 | TCONS_00068798-exon-scaffold_49-1491911889:576955..577810 | Clytia hemisphaerica | exon |
| TCONS_00068798-exon-scaffold_49-1510915933:576955..577810 | TCONS_00068798-exon-scaffold_49-1510915933:576955..577810 | Clytia hemisphaerica | exon |
| TCONS_00068798-exon-scaffold_49-1575043694:576955..577810 | TCONS_00068798-exon-scaffold_49-1575043694:576955..577810 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:565058..577810 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024872 | HEXIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004861 | cyclin-dependent protein serine/threonine kinase inhibitor activity |
| GO:0017069 | snRNA binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000122 | negative regulation of transcription from RNA polymerase II promoter |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0000122 |
negative regulation of transcription from RNA polymerase II promoter |
| cellular_component |
GO:0005737 |
cytoplasm |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0004861 |
cyclin-dependent protein serine/threonine kinase inhibitor activity |
| molecular_function |
GO:0017069 |
snRNA binding |
Blast
BLAST of TCONS_00068798 vs. Swiss-Prot (Human)
Match: PRPK (TP53-regulating kinase OS=Homo sapiens GN=TP53RK PE=1 SV=2) HSP 1 Score: 241.506 bits (615), Expect = 6.491e-73 Identity = 112/224 (50.00%), Postives = 166/224 (74.11%), Query Frame = 3
Query: 1536 AMKLFKQGAEARLYKADFLGKKVIVKERFQKTYRHPQLDLKLTQKRTLQEARAILRCRKAGISTPLVYFIDHKKHQIFMEEILDSLTLRERIDTLLKLNTDEAKSQLVSMAKAIGKMIAHIHSVDIIHGDLTTSNILVTSKNDKEDYVLIDFGLSSVSKFSEDMGVDLYVLERAFLSTHPNTEWLFAEILDSYFKCITDPKRNKEIMEKLEEIRMRGRKRVMIG 2207
++L KQGAEAR+++ F G+ ++K RF K YRHP L+ +L ++RT+QEARA+LRCR+AGIS P+V+F+D+ + ++MEEI S+T+R+ I + ++ T++ L ++AK IG+++A +H D+IHGDLTTSN+L+ ++ + VLIDFGLS +S ED GVDLYVLE+AFLSTHPNTE +F L SY T K+ + +++KL+E+R+RGRKR M+G
Sbjct: 35 GLELVKQGAEARVFRGRFQGRAAVIKHRFPKGYRHPALEARLGRRRTVQEARALLRCRRAGISAPVVFFVDYASNCLYMEEIEGSVTVRDYIQSTME--TEKTPQGLSNLAKTIGQVLARMHDEDLIHGDLTTSNMLLKPPLEQLNIVLIDFGLSFISALPEDKGVDLYVLEKAFLSTHPNTETVFEAFLKSY---STSSKKARPVLKKLDEVRLRGRKRSMVG 253
The following BLAST results are available for this feature:
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