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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068784 ID=TCONS_00068784|Name=TCONS_00068784|organism=Clytia hemisphaerica|type=transcript|length=542bp
ATCAAAATCAATATGTAtactttgaaattattttatacTCTCTTTTATAT
CCTTTACACTATCTTATAAGTTTAcgtaagaaaattttgaaaagtagtGG
GTTGAGCTTCACAACCGTTATAACATATAAGCTAGAAAATGACAGAAATC
AAGAACAAAATTTTCACAGGCCAAGCAACCAATGGAGTAAAAGATTACTC
AGAACTCAGTAAGATTGTACAAGAAACGTTTTTCGATTATTTGGTCAAAG
AcgtcaaaatcgaaaatggaTGGAAGGTTTTAGATATCGGATGTGGCACT
NATTATTTGGTCAAAGACGTCAAGATTGAAAAAGGATGGAAGGTTTTAGA
TATCGGATGTGGCACTGGAAATAATAGTTTCAAACTTTCCCAGATGGTTG
GTGAGCAAGGCAAAGTTGTTGCTATTGATCCTATCAAAGACCGAATAACT
GAAGCCAATTCTAGTTATAGCTCTCCAAATCTACGTTTCTATGAGGGCTC
AGCAAACGATGTTGCCAGATTTGGAAGTGATTTTGATTTGGT Run BLAST on NCBI transcript from alignment at scaffold_49:398842..406178+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068784 ID=TCONS_00068784|Name=TCONS_00068784|organism=Clytia hemisphaerica|type=transcript|length=7337bp|location=Sequence derived from alignment at scaffold_49:398842..406178+ (Clytia hemisphaerica)
ATCAAAATCAATATGTAtactttgaaattattttatacTCTCTTTTATAT
CCTTTACACTATCTTATAAGTTTAcgtaagaaaattttgaaaagtagtGG
GTTGAGCTTCACAACCGTTATAACATATAAGCTAGAAAATGACAGAAATC
AAGAACAAAATTTTCACAGGCCAAGCAACCAATGGAGTAAAAGATTACTC
AGAACTCAGTAAGATTGTACAAGAAACGTTTTTCGATTATTTGGTCAAAG
AcgtcaaaatcgaaaatggaTGGAAGGTTTTAGATATCGGATGTGGCACT
NATTATTTGGTCAAAGACGTCAAGATTGAAAAAGGATGGAAGGTTTTAGA
TATCGGATGTGGCACTGGAAACAATAGTTTCAAATTATCACAAATGGTCG
GAGAGCAAGGCAAAATTGTTGCTATTGATCCTATCAAAGATCGAATAACT
GAAGCCAATTCTAGTTATAGCTCTCCAAATCTACATTTCTATGAGGGTTC
AGCAAAGGATGTTACCAAATTTGGAAGTgattttgatttggttgttgCAG
CTACAGTCATACACTGGATACCACCGCAAGAAAGACAAGAAGTGTTCCAA
GGGATTATGCAAACTATGAAAGAAGGCGCTCAATTTATATTCAACATGAC
AAAGAAGGATACTTTCAACATGATACCTATCTtggccaaaatcaaaacaa
atcctTACAAGGGCGGAAACTACTGGCCTGTACCAGAGATCAAAGATATA
GAGCAATTAGCCAGCAATTCTGGTTATAGAGATGTCCAGGTTAAGGAACA
AGAAATGGTGCAACGATTACCCTCTCTCGATCAATATCTGAGATGGGCTG
CTTCTTCTTTTCACACACGAGATTATGACCAAACATTGAAGGAGTTGAGA
GATGTTTGTCAGAATGAAGATGTATCATGCCTTTATGATAAAGATGGACA
TTTagtttataaacaaaaatatttctttgccTATTGTAGAAAATGAATTT
AATTCAGTCCTCGATACCTGGCATAttcaattcaaataaaaaatttatat
ttatcgaaagatttcaaaaaatgctcaTCTTTTCGCTCTAAGATGAAGAA
GGTTTTATGAGATATCTGCAACAATTTGAGAGTGATATGGAATGACTTGT
GTTTTGAAGCAATCCATCATCTTTCTATAGCAATACATCATAAATTTTCT
GTCTTACTTCTGGAATCCCCATTTCGGATagatctttaaaaaataataaa
atcagtcatataattaaCCAGGAATGATATGCCTGATATGGCATTTCGTG
CAATTAGGATTAATACCCCTCGTATCATTTTGAAACAGTTTGAAATATCA
ATCCCTAATTTCCCTCAATGTCATATCATTACCATTACTAATATATTAGC
TATCAAAAACGAGTTCCTTATCTTCTCTAAACAGTATGACTCTAGTCTAT
ACACTTCATTTCGAAAGTACAATTTCCGCCCACCCCAGCAACCTGACCCA
TGCGGTTTTGCAGCAGGAAACTCAAGAcgcatcaaaaatattttatgtat
tGTTTGCAAAGAGGATAATTCGTATTAAATTTAAACATCCACCCAGATAG
GCAATTAACAAGGCAAGGCATTAACAAAAGGCACGAACGTTTATTATAAT
TATAACAATGATACCTTagtaacaaaaatttcaaaagcaaGTTTTGCATA
GCATGATGGTTTTGCATACTTTGTGTTCCCTGATTCAGTGACTTGATAAC
AGCTGGTCATAATTTACTTACTGAGCAAGGTAACCCCACAGATATcactg
taaagcccgaagggctagataggcaactttaagctttctccagcaaaaaa
aagtgaagcaaaaatttgaccttttaaatttcgtgccgatggataggatc
tagcattttaaatTGTTTTCGGAGTGCgatatcaaaaaaagtaggcggca
aacgctatttcacatctctcaaaccggtgaaattgcatattttagtcacg
tgactttggtaggaaatccttccaaacctaggcttcacttttcgataaaa
gccgcaaatctagcccttcgggctttacagatctgtgggtaACCCTCTGA
AGgcccttgaaaattaaccatctcAGGGAATAGTCTTTCCacagaaaatt
ctacaacaacaatcttgttgtgcgccggaaatcaaaaaactagattttcc
taatacggcgccctatttTAACTTTGTCTCGCTACTTTGTTGTTGTGGGC
TGGGATTCTTGGCGATGCACGAACCTCAAGAAAACGAGATTGCTTATTcg
tcagatttttttgttttcacaacTATAGAGCTTTAGTGTGCTGGGCAGAA
AATATCACAgtctgatctcaggttatgaTTTAGTAGCTTAAAGTGTAGCG
CTTTATTTTGACCAAAtctgccaaaataagttcccaccaaatttaatttt
gtgCCAGAAGGTATCAGTCAGGACTAAGtcactttttgatattttatttc
gtATATGATTTGAAAATCTCAAGCTATTTCCTTTTCAAAGGTGAATTCGG
CACAAGATGCTTATTTATTCAAGAACTGTATGTTCTATGAGGatgcattt
ttgtattttgagtaTTATCTCCTATCAAGATGTGACCAAATAGTGCAGAA
AACTGTAAAGATTTTGATTAACTTTTTCCTCTAAGAAGCTttgaacacca
aattttgctttgaaaacAGAAACTTTAAGAATTTGCGTCCCCGATGAGTG
TCCCCAGggcaaaaatgcaaaaaaagtcgATGTCGTCCGATTCTAATGAA
ATACAACACAATTAAATGGTGTAGAATCGAATGGCAATATTGTTTTTGGT
GTATTTGGGTCTTGTAGGGGGTAAAATTGGGGGTTTTGGGcaaaaaatga
cccaaaaattaagtttctccaattttgatgaaactttccacttttattca
atttttcatgcaGAATACGAAAACAACATTCAAGTTTTATGAAAGCCCCC
GAAATACACCTAGTATAAGAGGGGCTTTGGTCCAATTTTCGTCTTTTCAG
GGTTTAAACAAGACCAAAAATTCGAGCTTCTTTGATTTTAATGAAACGTG
AATTTGCAAGCATTTTTattgaataatttaaaattacACTCAAAATTAAC
CCCAAACTTGCACCCGTAAAACGAAAGGGTTTTTTGTCCAAATATTAGGC
TGTCCAGTGATACAAAATAATAATCAGAGGGTCCAATTTTTCTAATTCAA
CCTGCTTTTAGTCCCAAGGTTAAGGGGTTTAGAATAAAATacgaatggtt
cttttaaaaaatttttcgagaaaattacttttaaagagagaaaccttTTT
GTGTCGCCACGCAATCCAGTTTACCAGAGCTTGAAATCTtcccatccacc
aaattaaatctctgcgaaattttagaaaattgatcATTCTCCAAATTTAA
TTTCCGCTAAAAATCTCATTTTgaccaatcgccaaattaaatcaacgcca
aaattaatccacttaaggtagtagcctcatattataaaaaatagctgaaa
tatttttcctcaaaatcacaaaaacttGGGGTGTAaaagtttttgtgatt
ttgaggaaaaatatttcagctaTTTTACCTTACTCTTACCTTACCTTTTA
CCTTACTTATGGACAATTTTAGTTGTGCTCGTTTATAGTTTACAGCCTGA
ATATTAAGGCTAAAGAGATTGTATTAGATAATTTTCCGAATgacaaattt
gagaaaaaatatcaaGTGAATTTTCTAGCAAATTAGAGTGATCGGACTGA
GTTCTTTAATATTGATTGGGTGTATTACACGGCAAGGATTTGAAAGCAGA
CTTTATCGAGAAACCTGAGCTTATCGAAATTCCGGGCTTTAAAAAAAGAG
CTCACTTTGTAGAAGTGGTAACCATCCAGCTACACACACTTGACCATTAC
CTCTAGTGGGTTGCTTTTTCAATCCATACactaaattttgaagaaaaacg
aCAAAATTCGACAAACCTGCCAGGATAAAGACATTGGTGTCTTTACGACT
CTACGTACGCGTACGGATGTCGCCAAGACTGTAATATCGACTCTTGATTC
ACCGTCAAAActgcaaaaacttttattttgtcACCGCAAGACCCTCTTCT
TCTAACACCGAAACACTGACATAAAAAGGGATAAACAGTAATACCGTCAA
ACCCCCTTGcagaaaacaaactttttcgaATAATTNTTTCAACCTGCTTT
TAGTCCCAAGGTTAAGGGGTTTAGAATAAAATacgaatggttcttttaaa
aaaattttcgagaaaattacttttaaagagagaaaccttTTTGTGTCGCC
ACGCAATCCAGTTTACCAGAGCTTGAAATCTtcccatccaccaaattaaa
caTCTgcgaaattttagaaaattgatcATTCTCCAAATTTAATTTCCGCT
AAAAATCTCATTTTgaccaatcgccaaattaaatcaacgccaaaattaat
ccacttaaggtagcaGCCTCATATTATAAAAAAtagctgaaatatttttc
ttcaaaatcacaaaaactttTACACCCCTTTTACCTTACTTATGGACAAT
TTTAGTTGTGCTCGTTTATAGTTTACAGCCTGAATATTAAGGCTAAAGAA
ATTGTATTAGATAATTTTCCGAATgacaaatttgagaaaaaatatcaaGT
GAATTTTCTAGCAAATTAGAGTGATCGGACTGAGTTCTTTAATATTGATT
GGGTGTATTACACGGCAAGGATTTGAAAGCAGACTTTATCGAGAAACCTG
AGCTTATCGAAATTCCGGGCTTTAAAAAAAGAGCTCACTTTGTAGAAGTG
GTAACCATCCAGCTACACACACTTGACCATTACCTCTAGTGGGTTGCTTT
TTCAATCCATACactaaattttgaagaaaaacgaCAAAATTCGACAAACC
TGCCAGGATAAAGACATTGGTGTCTTTACGACTCTACGTACGCGTACGGA
TGTCGCCAAGACTGTAATATTGACTCTTGATTCACCGTCAAAActgcaaa
aacttttattttgtcACCGCAAGACACTCTTCTTCTAACACCGAAACACT
GACATAAAAAGGGATAAACAGTAATACCGTCAAACCCCCTTGcagaaaac
aaactttttcgaATAATTTTAACAAGGAccaaatttaagatttttagtAC
AATATTGCGATCTCATTGCAATTTGACTACAACCGATCTTGCTAATTGGT
AGTGTGAAATGCTTTTATCAGACTTGCACCAAACCAAAGTGTGTTAGGGC
ATGGTGGTGATGGACTCTCTACTTTCACTGGATGTCTTCTTCCTTTTAAT
CGATCTTCNCAGCCTCATATTATAAAAAAtagctgaaatatttttcttca
aaatcacaaaaactttTACACCCCCTTTACCTTACTTATGGACAATTTTA
GTTGTGCTCGTATATAGTTTACAGCCTGAATATTAAGGCTAAAGAAATTG
TATTAGATAATTTTCCGAATgacaaatttgagaaaaaatatcaaGTGAAT
TTTCTAGCAAATTAGAGTGATCGGACTGAGTTCTTTAATATTGATTGGGT
GTATTACACGGCAAGGATTTGAAAGCAGACTTTATCGAGAAACCTGAGCT
TATCGAAATTCCGGGCTTTAAAAAAAGAGCTCACTTTGTAGAAGTGGTAA
CCATCCAGCTACACACACTTGACCATTACCTCTAGTGGGTTGCTTTTTCA
ATCCATACactaaattttgaagaaaaacgaCAAAATTCGACAAACCTGCC
AGGATAAAGACATTGGTGTCTTTACGACTCTACGTACGCGTACGGATGTC
GCCAAGACTGTAATATTGACTCTTGATTCACCGTCAAAActgcaaaaact
tttattttgtcACCGCAAGACACTCTTCTTCTAACACCGAAACACTGACA
TAAAAAGGGATAAACAGTAATACCGTCAAACCCCCTTGcagaaaacaaac
tttttcgaATAATTTTAACAAGGAccaaatttaagatttttagtACAATA
TTGCGATCTCATTGCAATTTGACTACAACCGATCTTGCTAATTGGTAGTG
TGAAATGCTTTTATCAGACTTGCACCAAACCAAAGTGTGTTAGGGCATGG
TGGTGATGGACTCTCTACTTTCACTGGATGTCTTCTTCCTTTTAATCGAT
CTTccgttttttaagattttcgttatattaagaatattcaattaaggaaa
atacatattttttaagCTTTGGTCGGGACCCGTAAATTTTCTTGATTACG
ATGATGACACCTGGGAAAACAGTCATGACTTTAATTGGTTTCATCCGTCt
aattcttttctttcttttctagaTGGATAAAACcgtttggaaatttttaa
ttatctCCAGGTGGTTATAGTTTAAAGCAACAAAAATATGATCGTTATTT
TCCCCTTTAATGAAACTTCCGGGGTATTCATCATTAATACATAAACACCG
TCATCGTCGTTAACCTTGCGATCTGGGTCAAGACAGTGTTTTTTTCGAAA
CATATacataggctacgtcatatcttccttcgtttcaagcgtaaaactcc
tttcgggatatgagcactgctcttcttttcaatattgaaattctccggat
acatcacatgcgcactgaggttttaatgaaacaatagagagtttagaaac
ctaagccaatcagctgtgttttaaacattcttttatttgaaatctctatt
gataaacatcttttgtgaaagttgtctattacgtttaaacctattaataa
gcaattcccggtgggggttacTAGTGGCCGTCTaaagcagtgcctataga
ccaagagtaaggcctaaaagcctggagctgtctattgtgtagactaataT
TACATAACATAAACAATacatataatgttgaaaatgcTCAGGTTGTCAAA
AAAGTCTTTGGTAGTTCAAGATTCAGAAGACTATTGAATGATCTGCTCTT
CAGAAGTAAAGAAAATGACGATAATTAGAAACCAGAATGAGATCGGCGTT
AAAGAATACTTGAATCTCAGCAAAATAATCCAAGAAAAACTTTTCGATTA
TTTGGTCAAAGATATCAAAATCGAAAATGGATGGAAGGTTTTAGATATCG
GATGTGGCACTGGAAATAATAGTTTCAAACTTTCCCAGATGGTTGGTGAG
CAAGGCAAAGTTGTTGCTATTGATCCTATCAAAGACCGAATAACTGAAGC
CAATTCTAGTTATAGCTCTCCAAATCTACGTTTCTATGAGGGCTCAGCAA
ACGATGTTGCCAGATTTGGAAGTGATTTTGATTTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068784-exon-scaffold_49-1491911889:398842..399183 | TCONS_00068784-exon-scaffold_49-1491911889:398842..399183 | Clytia hemisphaerica | exon |
| TCONS_00068784-exon-scaffold_49-1510915933:398842..399183 | TCONS_00068784-exon-scaffold_49-1510915933:398842..399183 | Clytia hemisphaerica | exon |
| TCONS_00068784-exon-scaffold_49-1575043694:398842..399183 | TCONS_00068784-exon-scaffold_49-1575043694:398842..399183 | Clytia hemisphaerica | exon |
| TCONS_00068784-exon-scaffold_49-1491911889:405979..406178 | TCONS_00068784-exon-scaffold_49-1491911889:405979..406178 | Clytia hemisphaerica | exon |
| TCONS_00068784-exon-scaffold_49-1510915933:405979..406178 | TCONS_00068784-exon-scaffold_49-1510915933:405979..406178 | Clytia hemisphaerica | exon |
| TCONS_00068784-exon-scaffold_49-1575043694:405979..406178 | TCONS_00068784-exon-scaffold_49-1575043694:405979..406178 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:398842..406178 + |
Blast
The following BLAST results are available for this feature:
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