TCONS_00068782 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068782
Unique NameTCONS_00068782
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068782 ID=TCONS_00068782|Name=TCONS_00068782|organism=Clytia hemisphaerica|type=transcript|length=1228bp
CATACTTAAAGCAAGCCAACCAATTTTTAAATCTGATTAAAATCAGAATT
TAGACTATATAAATTACATTATCACTGCAAattgatttttctcttttaga
TTTTAATTAATGCATTGTAATAAACCTATAAATAGATGGCATGTGTTCAG
AAACGGCTGAATTTAATACTGGTTTTGTATATTCTTAACCTGTTCAACAC
TACTGATGGACTTCAATGTCAGGACATAGAAAATGATGTTCAAATCGACA
AAGAATTATCCAGTGGGCGTGTCAAGGGTTTATACTCTGGTTTTTATAAA
GACATTCCAGTGGTTTTAAGTTATCCTGCAGATTTGGAAATGAGAGATGA
CTTCAAGCATGGTTTACAAATGCTGATTGATTTTCAAGAGAGTGGTTTTG
TAACAGAATTGGTTGGCTATTGTTTGGATATAcaaaatttaaagATGGTG
ACGAAATATCATAAGCATGGTTCACTCGTAAATCTTGACCAGATTCTTGA
AGAATTCACTTCAGAGGAAGCGTGGAATAAGAGACTCCAACTGGCTGTCG
ATTATTTATCCATTATAGAATTTCTACATGAGAAGTCTAGAGTCATGTGT
GATAGTAGTGATTTGACAAAAACACTTAGTCAATATTTAATCACTGATGA
TTTTCGATTAGTTGTGAACGATCTAGACGCTTTACCGAGTGTATCAAATA
ATCAAATGATCAAGTGTGGCCATAGACAATTATTTGGTGAGTTTGTAGCA
CCAGAACAACTGTGGCCTCACGATGATCGACCTTTTTTGGACGAGGAAAT
GATTGGTTATGATGAAAAGACTGACATTTGGAAGATGCCAAAcgtgttgt
tgtttttattagGACGTTCTGCGTTAGCGACACGGACTAAAGTGTTGCTT
TTTGAATTATTCGGACAGTGTAAGAATATCGAGCCGGCTAAAAGACCCTC
GGCTAAAGAAGTGAAACAGAAATTTAAAGATGTTTTAGAAGGTATTAGAT
TGAAAATAGAGCTTTGAGATATGTACTACTTAAATTTGCATTTATTGTAA
GAAGGAATTGTGGCGGGAATTTATTTTGACGGATTAAGCATATTTTAatt
aaataagaacaaacttctTCCCTTTAGGTGGCTCAATTACCAACTGAggg
ctatcagaatcataaaaaagcaaACCCAAACCATAATCCACTAATCTTTC
ACAAAATCCTAATtgaggttgttttttt
Run BLAST on NCBI

protein sequence of TCONS_00068782-protein

>TCONS_00068782-protein ID=TCONS_00068782-protein|Name=TCONS_00068782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MACVQKRLNLILVLYILNLFNTTDGLQCQDIENDVQIDKELSSGRVKGLY
SGFYKDIPVVLSYPADLEMRDDFKHGLQMLIDFQESGFVTELVGYCLDIQ
NLKMVTKYHKHGSLVNLDQILEEFTSEEAWNKRLQLAVDYLSIIEFLHEK
SRVMCDSSDLTKTLSQYLITDDFRLVVNDLDALPSVSNNQMIKCGHRQLF
GEFVAPEQLWPHDDRPFLDEEMIGYDEKTDIWKMPNVLLFLLGRSALATR
TKVLLFELFGQCKNIEPAKRPSAKEVKQKFKDVLEGIRLKIEL
Run BLAST on NCBI

transcript from alignment at scaffold_49:383225..384698+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068782 ID=TCONS_00068782|Name=TCONS_00068782|organism=Clytia hemisphaerica|type=transcript|length=1474bp|location=Sequence derived from alignment at scaffold_49:383225..384698+ (Clytia hemisphaerica)
CATACTTAAAGCAAGCCAACCAATTTTTAAATCTGATTAAAATCAGAATT
TAGACTATATAAATTACATTATCACTGCAAattgatttttctcttttaga
TTTTAATTAATGCATTGTAATAAACCTATAAATAGATGGCATGTGTTCAG
AAACGGCTGAATTTAATACTGGTTTTGTATATTCTTAACCTGTTCAACAC
TACTGATGGACTTCAATGTCAGGACATAGAAAATGATGTTCAAATCGACA
AAGAATTATCCAGTGGGCGTGTCAAGGGTTTATACTCTGGTTTTTATAAA
GACATTCCAGTGGTTTTAAGTTATCCTGCAGATTTGGAAATGAGAGATGA
CTTCAAGCATGGTTTACAAATGCTGATTGATTTTCAAGAGAGTGGTTTTG
TAACAGAATTGGTTGGCTATTGTTTGGATATAcaaaatttaaaggtacat
aaTATGATTCCTAAAATGTTAGTTTGTCTAATTATTCAGGTccacatttt
cattttaaacgaAAATTTTAGATGGGTTGTTTTGATTGCTTCttgtttta
aaagatttttaagtttttagtTTCAAATAGTACATTTGGGTTAAACTATG
TAGGTTACATTAAAAAATCACACTTAACTGAGTCTAGCGGTGTTAAAAGG
TTTCTTTTAATCAAAGTTATAACTATTTTTTTCTCTACAGATGGTGACGA
AATATCATAAGCATGGTTCACTCGTAAATCTTGACCAGATTCTTGAAGAA
TTCACTTCAGAGGAAGCGTGGAATAAGAGACTCCAACTGGCTGTCGATTA
TTTATCCATTATAGAATTTCTACATGAGAAGTCTAGAGTCATGTGTGATA
GTAGTGATTTGACAAAAACACTTAGTCAATATTTAATCACTGATGATTTT
CGATTAGTTGTGAACGATCTAGACGCTTTACCGAGTGTATCAAATAATCA
AATGATCAAGTGTGGCCATAGACAATTATTTGGTGAGTTTGTAGCACCAG
AACAACTGTGGCCTCACGATGATCGACCTTTTTTGGACGAGGAAATGATT
GGTTATGATGAAAAGACTGACATTTGGAAGATGCCAAAcgtgttgttgtt
tttattagGACGTTCTGCGTTAGCGACACGGACTAAAGTGTTGCTTTTTG
AATTATTCGGACAGTGTAAGAATATCGAGCCGGCTAAAAGACCCTCGGCT
AAAGAAGTGAAACAGAAATTTAAAGATGTTTTAGAAGGTATTAGATTGAA
AATAGAGCTTTGAGATATGTACTACTTAAATTTGCATTTATTGTAAGAAG
GAATTGTGGCGGGAATTTATTTTGACGGATTAAGCATATTTTAattaaat
aagaacaaacttctTCCCTTTAGGTGGCTCAATTACCAACTGAgggctat
cagaatcataaaaaagcaaACCCAAACCATAATCCACTAATCTTTCACAA
AATCCTAATtgaggttgttttttt

Coding sequence (CDS) from alignment at scaffold_49:383225..384698+

>TCONS_00068782 ID=TCONS_00068782|Name=TCONS_00068782|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_49:383225..384698+ (Clytia hemisphaerica)
ATGGCATGTGTTCAGAAACGGCTGAATTTAATACTGGTTTTGTATATTCT
TAACCTGTTCAACACTACTGATGGACTTCAATGTCAGGACATAGAAAATG
ATGTTCAAATCGACAAAGAATTATCCAGTGGGCGTGTCAAGGGTTTATAC
TCTGGTTTTTATAAAGACATTCCAGTGGTTTTAAGTTATCCTGCAGATTT
GGAAATGAGAGATGACTTCAAGCATGGTTTACAAATGCTGATTGATTTTC
AAGAGAGTGGTTTTGTAACAGAATTGGTTGGCTATTGTTTGGATATAcaa
aatttaaagATGGTGACGAAATATCATAAGCATGGTTCACTCGTAAATCT
TGACCAGATTCTTGAAGAATTCACTTCAGAGGAAGCGTGGAATAAGAGAC
TCCAACTGGCTGTCGATTATTTATCCATTATAGAATTTCTACATGAGAAG
TCTAGAGTCATGTGTGATAGTAGTGATTTGACAAAAACACTTAGTCAATA
TTTAATCACTGATGATTTTCGATTAGTTGTGAACGATCTAGACGCTTTAC
CGAGTGTATCAAATAATCAAATGATCAAGTGTGGCCATAGACAATTATTT
GGTGAGTTTGTAGCACCAGAACAACTGTGGCCTCACGATGATCGACCTTT
TTTGGACGAGGAAATGATTGGTTATGATGAAAAGACTGACATTTGGAAGA
TGCCAAAcgtgttgttgtttttattagGACGTTCTGCGTTAGCGACACGG
ACTAAAGTGTTGCTTTTTGAATTATTCGGACAGTGTAAGAATATCGAGCC
GGCTAAAAGACCCTCGGCTAAAGAAGTGAAACAGAAATTTAAAGATGTTT
TAGAAGGTATTAGATTGAAAATAGAGCTTTGAATGGCATGTGTTCAGAAA
CGGCTGAATTTAATACTGGTTTTGTATATTCTTAACCTGTTCAACACTAC
TGATGGACTTCAATGTCAGGACATAGAAAATGATGTTCAAATCGACAAAG
AATTATCCAGTGGGCGTGTCAAGGGTTTATACTCTGGTTTTTATAAAGAC
ATTCCAGTGGTTTTAAGTTATCCTGCAGATTTGGAAATGAGAGATGACTT
CAAGCATGGTTTACAAATGCTGATTGATTTTCAAGAGAGTGGTTTTGTAA
CAGAATTGGTTGGCTATTGTTTGGATATAcaaaatttaaagATGGTGACG
AAATATCATAAGCATGGTTCACTCGTAAATCTTGACCAGATTCTTGAAGA
ATTCACTTCAGAGGAAGCGTGGAATAAGAGACTCCAACTGGCTGTCGATT
ATTTATCCATTATAGAATTTCTACATGAGAAGTCTAGAGTCATGTGTGAT
AGTAGTGATTTGACAAAAACACTTAGTCAATATTTAATCACTGATGATTT
TCGATTAGTTGTGAACGATCTAGACGCTTTACCGAGTGTATCAAATAATC
AAATGATCAAGTGTGGCCATAGACAATTATTTGGTGAGTTTGTAGCACCA
GAACAACTGTGGCCTCACGATGATCGACCTTTTTTGGACGAGGAAATGAT
TGGTTATGATGAAAAGACTGACATTTGGAAGATGCCAAAcgtgttgttgt
ttttattagGACGTTCTGCGTTAGCGACACGGACTAAAGTGTTGCTTTTT
GAATTATTCGGACAGTGTAAGAATATCGAGCCGGCTAAAAGACCCTCGGC
TAAAGAAGTGAAACAGAAATTTAAAGATGTTTTAGAAGGTATTAGATTGA
AAATAGAGCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042892XLOC_042892Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068782-proteinTCONS_00068782-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068782-exon-scaffold_49-1491911889:383225..383668TCONS_00068782-exon-scaffold_49-1491911889:383225..383668Clytia hemisphaericaexon
TCONS_00068782-exon-scaffold_49-1510915933:383225..383668TCONS_00068782-exon-scaffold_49-1510915933:383225..383668Clytia hemisphaericaexon
TCONS_00068782-exon-scaffold_49-1575043694:383225..383668TCONS_00068782-exon-scaffold_49-1575043694:383225..383668Clytia hemisphaericaexon
TCONS_00068782-exon-scaffold_49-1491911889:383915..384698TCONS_00068782-exon-scaffold_49-1491911889:383915..384698Clytia hemisphaericaexon
TCONS_00068782-exon-scaffold_49-1510915933:383915..384698TCONS_00068782-exon-scaffold_49-1510915933:383915..384698Clytia hemisphaericaexon
TCONS_00068782-exon-scaffold_49-1575043694:383915..384698TCONS_00068782-exon-scaffold_49-1575043694:383915..384698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:383225..384698 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.32688	4.82109	2.75945	1.92835	3.99089	3.48757	3.93904	3.52006	3.90208	2.58021	3.49208	3.29261	0.995673	0.745453	1.2455	1.42147	2.37841	1.68771	0.407115	1.00695	1.54847	2.16735	4.83027	3.55669	3.02783	4.23689	0.907059	1.01899	2.55046	2.44103
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001245Ser-Thr/Tyr_kinase_cat_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00068782 vs. Swiss-Prot (Human)
Match: SG196 (Protein O-mannose kinase OS=Homo sapiens GN=POMK PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 6.576e-74
Identity = 126/276 (45.65%), Postives = 184/276 (66.67%), Query Frame = 1 
Query:  196 NTTDGLQCQDIENDVQIDKELSSGRVKGLYSGFYKDIPVVLSYPADLEMRDDFKHGLQMLIDFQESGFVTELVGYCLDIQNLKMVTKYHKHGSLVNLDQIL--EEFTSEEAWNKRLQLAVDYLSIIEFLHEK---SRVMCDSSDLTKTLSQYLITDDFRLVVNDLDALPSV--SNNQMIKCGHRQLFGEFVAPEQLWPH-DDRPFLDEEMIGYDEKTDIWKMPNVLLFLLGRSALATRTKVLLFELFGQCKNIEPAKRPSAKEVKQKFKDVLEGIR 999
            N +  L C+++  +V+  K +  G VK ++   +K+  V LS    LEM+DDF HGLQML   Q +  VT L+GYC D  +  M+T+YH  GSL NL++ L   ++ +   W  RL+LA+DY+SII +LH     +RVMCDS+DL KTLSQYL+T +F ++ NDLDALP V  S+  ++KCGHR+L G+FVAPEQLWP+ +D PF D+ M  YDEK DIWK+P++  FLLG    +   +  LF++   CK+  P++RP+A++V + ++ VL+ +R
Sbjct:   67 NCSPWLSCEELRTEVRQLKRVGEGAVKRVFLSEWKEHKVALSQLTSLEMKDDFLHGLQMLKSLQGTHVVT-LLGYCED--DNTMLTEYHPLGSLSNLEETLNLSKYQNVNTWQHRLELAMDYVSIINYLHHSPVGTRVMCDSNDLPKTLSQYLLTSNFSILANDLDALPLVNHSSGMLVKCGHRELHGDFVAPEQLWPYGEDVPFHDDLMPSYDEKIDIWKIPDISSFLLGHIEGSDMVRFHLFDIHKACKSQTPSERPTAQDVLETYQKVLDTLR 339
The following BLAST results are available for this feature:
BLAST of TCONS_00068782 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SG1966.576e-7445.65Protein O-mannose kinase OS=Homo sapiens GN=POMK P... [more]
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