TCONS_00068767 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068767
Unique NameTCONS_00068767
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068767 ID=TCONS_00068767|Name=TCONS_00068767|organism=Clytia hemisphaerica|type=transcript|length=470bp
TATGGTTCGAGAAATTCTCAGATGAAGACCTCAATGGTTTGCTCAAACAA
TCCCTAAAGAGAATTGAATCCCGCAAATTTCTTCCCATCATCTATCAAGT
GGCGGCACGCCTTGGTACCGCCATGACTACACAAAGCGCCTCCTTCAAAG
AAAACATCGAACAGGTGATTTTCCAATGTGTATCAGAACATCCGCACCAT
TCAGCGTACGTATTGATGGCTCTCAAACACGCCGACATGGACAACAAGAT
GACCGTCCGAAATTCCAGAACAAAACCACCAACATTGAAACCACAAGATA
AGACTCGCTTGGATGCAGCTTGTTCTGTGGTTGAAAGATTGCGAAAACGA
CACACGAAGTACATTCAAGATATAGAGCATCTTTCGCAAGTATACATCGA
AATGGCTTACTGGGATATCAAACACCTCAAAACAGAAACTGGTCCTTTTG
ACATTCCGGAAAGCAGAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_49:226101..227545+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068767 ID=TCONS_00068767|Name=TCONS_00068767|organism=Clytia hemisphaerica|type=transcript|length=1445bp|location=Sequence derived from alignment at scaffold_49:226101..227545+ (Clytia hemisphaerica)
TATGGTTCGAGAAATTCTCAGATGAAGACCTCAATGGTTTGCTCAAACAA
TCCCTAAAGAGAATTGAATCCCGCAAATTTCTTCCCATCATCTATCAAGT
GGCGGCACGCCTTGGTACCGCCATGACTACACAAAGCGCCTCCTTCAAAG
AAAACATCGAACAGGTCTTACATGACTCTTACTTTAataggattaatttt
cgcggggatcaaattaaaaagaagcgctaataatgcgtatttcacaACCA
CGTGCATAGTTTGCCAGAAAGATAGCAAAAATagcacaaaatcgtgaaaa
gattatctcacaatagagtcatccgcgaaattactAGTTAGTCCTCGCGA
Aaccttaaaatttcgcggatgagctcaaccgtgaaatttaattcccgcga
aagTTAATCCCACTAAAGTAGCTGCATTAATGCAATTTTGTAGATTCTTT
TTCAATTAAGCTAGCTCCTAGTAACGAGTCTTTAGAACTTTAGTAACATC
AATGATTTCTTACCGTGTAGGTGATTTTCCAATGTGTATCAGAACATCCG
CACCATTCAGCGTACGTATTGATGGCTCTCAAACACGCCGACATGGACAA
CAAGATGACCGTCCGAAATTCCAGAACAAAACCACCAACATTGAAACCAC
AAGATAAGGTGAATGAATCAATGCTGGTGAATTNGACCGTCCGAAATTCA
AGAACAAAACCACCAACATTGAAACCACAAGATAAGGTGAATGAAGCAAT
GCTGgtgaatttcaaatttcaggTTATCTAAAGATGACTAAAGGATCTGT
TCAAATTAAGGGAGCATTTGAATTTTACGATTTCGAATTACACCAAATAT
CCCTTGTATCCTTTTAGCTACCCTCGCTCTACTTTCAgacatttcttttt
ctttcgggTTCAGACTCGCTTGGATGCAGCTTGTTCTGTGGTTGAAAGAT
TGCGAAAACGACACACGAAGTACATTCAAGATATAGAGCATCTTTCGCAA
GTATACATCGAAATGGCTTACTGGGATATCAAACACCTCAAAACAGAAAC
TGGTTTGTTTTTAAGATGAACTTTTTTGTTGTCCTATTTTCTGTCACCAA
GATACTTCCAATGCCTTCCTAACCTTCCCAGCccgcaacattttttgaaa
aaacatgtGAAAATCTCCaactttttttgttgaaatccaacatttaaaat
tgacataaaagcttgtaacttGAGAGTTGGACAATGATTTGAAAAAGGTA
TTTGtatactttttctctttctttctttcggTTTATGCCCTTCTAAATCA
AGTGGTAAGGAGTTATAGCCTTAAATCTGGGACTCGGTATATTGGCAAAT
TTAAAACGTGTATGCACATTTTCCGGGTTTAAAGGGTTAATAAATATTTC
CCCCTCCTCTCAACAGGTCCTTTTGACATTCCGGAAAGCAGAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042883XLOC_042883Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068767-exon-scaffold_49-1491911889:226101..226264TCONS_00068767-exon-scaffold_49-1491911889:226101..226264Clytia hemisphaericaexon
TCONS_00068767-exon-scaffold_49-1510915933:226101..226264TCONS_00068767-exon-scaffold_49-1510915933:226101..226264Clytia hemisphaericaexon
TCONS_00068767-exon-scaffold_49-1575043694:226101..226264TCONS_00068767-exon-scaffold_49-1575043694:226101..226264Clytia hemisphaericaexon
TCONS_00068767-exon-scaffold_49-1491911889:226621..226758TCONS_00068767-exon-scaffold_49-1491911889:226621..226758Clytia hemisphaericaexon
TCONS_00068767-exon-scaffold_49-1510915933:226621..226758TCONS_00068767-exon-scaffold_49-1510915933:226621..226758Clytia hemisphaericaexon
TCONS_00068767-exon-scaffold_49-1575043694:226621..226758TCONS_00068767-exon-scaffold_49-1575043694:226621..226758Clytia hemisphaericaexon
TCONS_00068767-exon-scaffold_49-1491911889:227014..227152TCONS_00068767-exon-scaffold_49-1491911889:227014..227152Clytia hemisphaericaexon
TCONS_00068767-exon-scaffold_49-1510915933:227014..227152TCONS_00068767-exon-scaffold_49-1510915933:227014..227152Clytia hemisphaericaexon
TCONS_00068767-exon-scaffold_49-1575043694:227014..227152TCONS_00068767-exon-scaffold_49-1575043694:227014..227152Clytia hemisphaericaexon
TCONS_00068767-exon-scaffold_49-1491911889:227517..227545TCONS_00068767-exon-scaffold_49-1491911889:227517..227545Clytia hemisphaericaexon
TCONS_00068767-exon-scaffold_49-1510915933:227517..227545TCONS_00068767-exon-scaffold_49-1510915933:227517..227545Clytia hemisphaericaexon
TCONS_00068767-exon-scaffold_49-1575043694:227517..227545TCONS_00068767-exon-scaffold_49-1575043694:227517..227545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:226101..227545 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.22603	2.80734	3.79864	4.13269	2.15996	1.13857	5.1196	5.7733	3.35223	4.4682	5.10733	4.34281	3.81742	5.84385	5.89307	6.40693	7.0678	4.73152	5.08152	5.3004	3.1734	3.90726	4.79242	5.21129	8.64068	7.70867	2.19518	1.78741	4.11261	4.41828
Blast
[Close]
BLAST of TCONS_00068767 vs. Swiss-Prot (Human)
Match: ATM (Serine-protein kinase ATM OS=Homo sapiens GN=ATM PE=1 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 1.095e-20
Identity = 50/159 (31.45%), Postives = 85/159 (53.46%), Query Frame = 3 
Query:    3 WFEKFSDEDLNGLLKQSLKRIESRKFLPIIYQVAARLGTAMTTQSASFKENIEQVIFQCVSEHPHHSAYVLMALKHADMDNKMT----VRNSRTK---PPTLKPQDKTRLDAACSVVERLRKRHTKYIQDIEHLSQVYIEMAYWDIKHLKTETGPFDIP 458
            W E     ++NG++K+   +I + KFLP++YQ+AAR+GT M      F E +  +I +   +HPHH+ ++++AL +A+ D  +T     R SR     P      D+ R +AA  ++  +R R  + ++ +E L   YI +A  D    KT+    +IP
Sbjct: 2491 WLENSGVSEVNGMMKRDGMKIPTYKFLPLMYQLAARMGTKMMG-GLGFHEVLNNLISRISMDHPHHTLFIILALANANRDEFLTKPEVARRSRITKNVPKQSSQLDEDRTEAANRIICTIRSRRPQMVRSVEALCDAYIILANLDATQWKTQRKGINIP 2648
The following BLAST results are available for this feature:
BLAST of TCONS_00068767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATM1.095e-2031.45Serine-protein kinase ATM OS=Homo sapiens GN=ATM P... [more]
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