TCONS_00068758 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068758
Unique NameTCONS_00068758
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068758 ID=TCONS_00068758|Name=TCONS_00068758|organism=Clytia hemisphaerica|type=transcript|length=860bp
AAATAATTTAATTTAGATGACGCATTTGACTGTCTTACCGGGACTCACAA
AGAGAATTTATTCTGAAGCATTTCATCAAACTTTTGAATTATTTAAAGTC
CTAGTAATTTTCCTCACTGTGCtttgtaatagttttattttctcattttt
tgttctattgttcttattgtaatatattttgaagGTAAATGAATAATTAA
TGTGAAATCACTATCACCATAAATATACAGTGCGACGATTTCTTTGGCAT
CAGTCGACGTTGGAAATCATTAGAAGCAGAACTCAACAAGATGAGGGGTC
GCTCGCACACTTTCTCACATCAAATGCTTCTTCCTGAAGAAGACAGCGGA
TCCATCATCTTAGAAGATGTTTGTAGACCGAGATCCAGAACCATTGTTCT
CACCTTCACTGACGAACGATCACCAaagagtgacgtcatcaaaccaACCA
ACCGTCAATGCAGACCGCGCAACAAGACCATCGATATCTGCCGTAGTTTC
AGTTTAAACAACATCGCTTCTACCTTTATCGAGGGTTTGAAAAACTGTAC
TAAAGATGTCAATAAGCCAGACTATAAATTACTGACCACTCTGAATGCTG
CGGAAGTGAAATTACACTTTCCTCCATCTTACTCCGATAAAGAGCAATTA
GACTTTCTGAAGAGCAAAAATACTCGACGACTTGCTGTCCAGTATAGCTC
AAGTCGCAAAGAAACTCGAAAAACGCTCAAACAATGTATGCGTTTTTTAC
ACCTGCAGAGTATGTTCCCTTGGTTGTATtagtttatttttaatttcttt
tttagattATTTGTAGATATGTAATATAGTTAAGCTTgtcgaaaaataaa
attaaaaatg
Run BLAST on NCBI

transcript from alignment at scaffold_49:162596..163455+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068758 ID=TCONS_00068758|Name=TCONS_00068758|organism=Clytia hemisphaerica|type=transcript|length=860bp|location=Sequence derived from alignment at scaffold_49:162596..163455+ (Clytia hemisphaerica)
AAATAATTTAATTTAGATGACGCATTTGACTGTCTTACCGGGACTCACAA
AGAGAATTTATTCTGAAGCATTTCATCAAACTTTTGAATTATTTAAAGTC
CTAGTAATTTTCCTCACTGTGCtttgtaatagttttattttctcattttt
tgttctattgttcttattgtaatatattttgaagGTAAATGAATAATTAA
TGTGAAATCACTATCACCATAAATATACAGTGCGACGATTTCTTTGGCAT
CAGTCGACGTTGGAAATCATTAGAAGCAGAACTCAACAAGATGAGGGGTC
GCTCGCACACTTTCTCACATCAAATGCTTCTTCCTGAAGAAGACAGCGGA
TCCATCATCTTAGAAGATGTTTGTAGACCGAGATCCAGAACCATTGTTCT
CACCTTCACTGACGAACGATCACCAaagagtgacgtcatcaaaccaACCA
ACCGTCAATGCAGACCGCGCAACAAGACCATCGATATCTGCCGTAGTTTC
AGTTTAAACAACATCGCTTCTACCTTTATCGAGGGTTTGAAAAACTGTAC
TAAAGATGTCAATAAGCCAGACTATAAATTACTGACCACTCTGAATGCTG
CGGAAGTGAAATTACACTTTCCTCCATCTTACTCCGATAAAGAGCAATTA
GACTTTCTGAAGAGCAAAAATACTCGACGACTTGCTGTCCAGTATAGCTC
AAGTCGCAAAGAAACTCGAAAAACGCTCAAACAATGTATGCGTTTTTTAC
ACCTGCAGAGTATGTTCCCTTGGTTGTATtagtttatttttaatttcttt
tttagattATTTGTAGATATGTAATATAGTTAAGCTTgtcgaaaaataaa
attaaaaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042880XLOC_042880Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068758-exon-scaffold_49-1491911889:162596..163455TCONS_00068758-exon-scaffold_49-1491911889:162596..163455Clytia hemisphaericaexon
TCONS_00068758-exon-scaffold_49-1510915933:162596..163455TCONS_00068758-exon-scaffold_49-1510915933:162596..163455Clytia hemisphaericaexon
TCONS_00068758-exon-scaffold_49-1575043694:162596..163455TCONS_00068758-exon-scaffold_49-1575043694:162596..163455Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:162596..163455 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.301268	0	0	0.286016	0.0552535	0.531053	0	0.256611	0.205864	0.342649	0.145138	0.152009	0.0478517	0.0933968	0.149258	0.24796	0.75633	0.983552	0.258045	0.3811	0	0	2.49538	1.16113	0.924245	0.759197
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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