TCONS_00068751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068751
Unique NameTCONS_00068751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068751 ID=TCONS_00068751|Name=TCONS_00068751|organism=Clytia hemisphaerica|type=transcript|length=1737bp
TGTATTTTGTGAAGAGTCGTTTGATGGAACGCTTGATTGCTTTCGAATGA
GAACCCACAGGTGCTGCTCACCCTCTGCATGCTTCCTTACCTCATCTGCT
GCAGTTTTTCCCATTCttgcaaaagcatttttttgttgctgcaacaaaaa
tttcagatttcaatcttcaccaaaatatttttttataaaattggtGTAAA
GAAGAGAGGTGGTTGTTGGAAGCAAAGATGCATAAGATTTGCTTGTTAGC
CGTACTTTTTGCGGCGGTCTATGCTAGaccatattttgaccaaaacagTG
AGTCACACTTCACTGTCCACGAGAAACCACCAGAACTTGTTGTCAATGCT
GGACCAGAAGGAGTCAAAGTCCAAGCTAAACCATCCAAACTTCAAGTTGT
TGAATATCCAGGACATCAAGTTGCTGCCCAAAAACGCGATGATATCACCA
ACTGTTACTTCGGTGGTGAAGGTTGTGGTGGACACGGTGGCCTCGGTTTA
GGAGGCTATGGAGGCCACGGATTCGGTGGCGGATATGGCGGTCACGGCTT
AGGCGGTGGCTATGGCGGTTATGGCCACGGTGGTGGTTATGGCGGAAATG
GAGGCGGTTATGGCGGTGGTTATGGCGGAAATGGAGGCGGTTATGGCGGT
GGTTATGGCGGACACGGCTTCGGTGGTGGATACGGAGGATACGGTGGTCA
TGGATGCGTTGGACATGATTGTGCATTCAGCGGATGTCTTTACAATGGAG
GTGGTTACGGATGTGGCGCCCACCACGATCACACCACATATGTGCCATCA
CACACTCCCCCCGTTCACGTTGGTCCAAACGCTCCACCAATTCACGTTGG
CCCACACGTTCCAGCTGTTCATGTCGGACCACATGTACCAAGCATCCATT
ACGGTACTCATGCTCCATTATACCATGTTGGACCACACGTTCCATTCGTT
CACATGCCACCACCTGTTCACACTGTCCATGCAGGACCCATGGGACCACC
AGTGCACGTCACCTCACCACCAACCGTTTACCATCAACCACCAGTTGTCT
ACCATCAACCTCATGTTGTTGGACATGCTGCAGACCACGACTTCGGACAT
CATGTTGGAGTTGGAGGAGATTATGGAGGTCATTACGGATCTGGATACGG
ATGGGGAGGTCACGGTGGATACGGAGGATATGGCGGCCACGGATTCGGTG
GTGGTTCCGGTGGTGGTTTCGGTGGTGGCTATGGAGGTGGCTATGGAGGC
CACGGACTCGGTGGCGGATATGGCGGCCACGGCTTGGGTGGTGGTTATGG
AGGTTATGGCCATGGTGGTGCCGGTTATGGTGGTTTGGGTGGTCATGATG
GAGAATGCTGTGAAGCTGGAGGTTATGGTCATGGATACAAGAGAGCTATC
AAACAAAAACGATCGATTGAAGctTAAAGCAGTTGTCCACGCCAACATCA
GGCAGTCAGAAAAGCTACGACTGGAGGTCATAAGGTGAGAACGCACCGAA
AGATCTATCCAGCACCACAAGAGGCTTCCAAGACTCTGACGACTGTATCT
ATTAGCAACAATCACTACGAATCTTTTATAAATAACATagctttattttt
aaaatcctGTAAATTTATAATTCTAAACAAAGAAATTATGATATGTTTCA
TaaactttttctctttaaaCTAAATCTTCGTCTGAAATTTTCATCGATGC
TCAagttgaaaaattgattttccttCTCTTTTTTTCA
Run BLAST on NCBI

transcript from alignment at scaffold_49:130931..137540+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068751 ID=TCONS_00068751|Name=TCONS_00068751|organism=Clytia hemisphaerica|type=transcript|length=6610bp|location=Sequence derived from alignment at scaffold_49:130931..137540+ (Clytia hemisphaerica)
TGTATTTTGTGAAGAGTCGTTTGATGGAACGCTTGATTGCTTTCGAATGA
GAACCCACAGGTGCTGCTCACCCTCTGCATGCTTCCTTACCTCATCTGCT
GCAGTTTTTCCCATTCttgcaaaagcatttttttgttgctgcaacaaaaa
tttcagatttcaatcttcaccaaaatatttttttataaaattggtGTAAA
GAAGAGAGGTGGTTGTTGGAAGCAAAGATGCATAAGATTTGCTTGTTAGC
CGTACTTTTTGCGGCGGTCTATGCTAGaccatattttgaccaaaacagTG
AGTCACACTTCACTGTCCACGAGAAACCACCAGAACTTGTTGTCAATGCT
GGACCAGAAGGAGTCAAAGTCCAAGCTAAACCATCCAAACTTCAAGTTGT
TGAATATCCAGGACATCAAGTTGCTGCCCAAAAACGCGATGATATCACCA
ACTGTTACTTCGGTGGTGAAGGTTGTGGTGGACACGGTGGCCTCGGTTTA
GGAGGCTATGGAGGCCACGGATTCGGTGGCGGATATGGCGGTCACGGCTT
AGGCGGTGGCTATGGCGGTTATGGCCACGGTGGTGGTTATGGCGGAAATG
GAGGCGGTTATGGCGGTGGTTATGGCGGAAATGGAGGCGGTTATGGCGGT
GGTTATGGCGGACACGGCTTCGGTGGTGGATACGGAGGATACGGTGGTCA
TGGATGCGTTGGACATGATTGTGCATTCAGCGGATGTCTTTACAATGGAG
GTGGTTACGGATGTGGCGCCCACCACGATCACACCACATATGTGCCATCA
CACACTCCCCCCGTTCACGTTGGTCCAAACGCTCCACCAATTCACGTTGG
CCCACACGTTCCAGCTGTTCATGTCGGACCACATGTACCAAGCATCCATT
ACGGTACTCATGCTCCATTATACCATGTTGGACCACACGTTCCATTCGTT
CACATGCCACCACCTGTTCACACTGTCCATGCAGGACCCATGGGACCACC
AGTGCACGTCACCTCACCACCAACCGTTTACCATCAACCACCAGTTGTCT
ACCATCAACCTCATGTTGTTGGACATGCTGCAGACCACGACTTCGGACAT
CATGTTGGAGTTGGAGGAGATTATGGAGGTCATTACGGATCTGGATACGG
ATGGGGAGGTCACGGTGGATACGGAGGATATGGCGGCCACGGATTCGGTG
GTGGTTCCGGTGGTGGTTTCGGTGGTGGCTATGGAGGTGGCTATGGAGGC
CACGGACTCGGTGGCGGATATGGCGGCCACGGCTTGGGTGGTGGTTATGG
AGGTTATGGCCATGGTGGTGCCGGTTATGGTGGTTTGGGTGGTCATGATG
GAGAATGCTGTGAAGCTGGAGGTTATGGTCATGGATACAAGAGAGCTATC
AAACAAAAACGATCGATTGAAGGTGAGTCCAATGAATCTTCTTTTGACGA
AGACAAACAAACCACAACTGACTTGACTGAGAAGACGAATAACATCCAAA
AACGTGACGCTCCATATTACGGTTGGCATCCATTCCCTGCTAGTGTTCAT
GTTGGTCCCCATACTCCACCCATTCACATCGGTCCCCACTACCCACCTGT
ACATATTGGACCCCATGTCCCTGCTGTCCATATTGGTCCCCATGTCCCTT
ACATTAACATCCCTGCTCATGTACCAGCTATTCACGTCCGTCCACACGTC
CCCGCTGTCCATATCTCTCCCCCAGTCCCCATCATCAACGCAGGCAACCA
CGTTCCATCAGTGCATGTCACCTCACCACCAACAGTGTACCACAGACCAC
CCATTGTCATTCATCAACCTCATATTGTGCACGGTCCCCTTCACCACGAT
TACGGTCACGAAGTTTACGGTAACGGTTTTGGCTTTGGTGGTGGTTATGG
TGGTGGTTATGGTGGTGGTTATGCTGGTTATGGTGGTCATCAACATGGAC
TCACCATGGAGCATGATGGTGGTTTTGGACATGGATGGGGTAAAAGAAGC
GACATCCCTTCATCACCAGCTGAAAGTGGTAAGAAACAACTCACATTAAA
AGCTTTTTCACGACGAAGACGTCAATTAATGGGAGGAAATACTGATGGGA
GTGATTCCGTCATTTTCGTTCATCCTGGAGGAGGCCAAACTCCAGTCAGT
TCTGGTGCTCAGCTGAACACTCAACTTAACAATGATAGTCCTTTAGCTGG
CTTGATGCCAAACCAAGGGCAATCTAATGCAGCTATTCACACTCAATCAC
CTCCACAAATGGAAACTCCAGCTCTTCCACAACAAAGTCAAAATCAGGCC
TTCACCAAGTCTGGCTTGTCCAATCTTGGTTCTATTACCAACTCTATGAG
CAACAATGCTGATCGTGATCGAGAGCTCCAGAATCTGGTCGGTAGCCTAT
CAGGAGGTCTCAGTGGAGGTCTTTCTAACGGAGGATTACCAGCAGGTTTG
GGTAACCTTGCCAACCTTGCTCAACAATCCAACTCCAATGGCAACACCAT
GGAAGTTCAAGGAAGTCCACAACAAGAGCCTTTGAACATCCAATCATCCG
CCCCTCAACATGATGAAGGTGTCCAGAGTGAAAGCCCCAACATGAACATC
GGTGGATTGCAAGATGGTGGAAACTACCCAGAAGAAGCGCCTCACAACGA
GGAACCACCTCATGGAGAGGAACAATCAGAGGGTTCCAATAATAACCAAG
GTAACGATTACCGCAGATCGGGCGTTCCCACCCAAGAACACGCCTCTTTC
TATGAAGATGAGGCTGATGAAGTTGACGATGTTGATGACTCCATGGAACG
TGACACGAAATCCACCATCCCACACGAAGATGACGATTTCATAGACANAA
CGCGACACGAAATCCACCATCCCACACGAAGATGACGACCTCATAGACTA
TGACATTCACGAACGTGTCCATAAAGACGTTATTCCGAGACCGGAAGATT
TTAACTAACTTTGACAAGACTATGACTGTATGACGAGTTGACTTAACTTA
AGGTACGCTGAAAGCCTTGAATGGTcaaagaagaaaagtttgaagagtGT
AGTTGAAGTAATAAACCCTTGACTTCCACTTTTTATCTATTTCTTAATAA
TAGTCTTCCCTTTCTTTCTTTTAGTCATAGCGTACTTTTTATCTTACTAA
ACATATTCAAGTAATTCTTTTGACACAATATCAGATAGTTTAGAAAGGGT
TTATTACTTTCGCATACGCACAAACAAAATCACACACACAAACACACACA
GCATGTCATACATCATTCAacaccgcactgtcatcatcaTGGTCAATTCC
AATCCAACCACAGACCCAATGAGGCGCtgatttcaccaaaattttcaaaa
taagcaCAGTAATATCATGTTGAGGGGCGGAAAGATCTGACGAAACATCG
CTAATTCATTGGGGCTGTAACGGGAGAGGAATCTAGAACCAAGATGGCGG
CTTTGCGTTTTGGTGATATTGTCCGCCTACagacttttcttctttttcct
tcaTTTTCCTGGAAATCTCAATTTACATACATTAACATTTTACACAATGA
ATTCAACTGAAAATTGGttaaaaatatgattaaaaataatctgaaaaaga
CTTATCCGACTTTTTATCTTAGCATACCGTCTGCTTTTTAAACGAAGCCA
CGTATCAATAAAAACTCttacattttttatctttttagctTAAAGCAGTT
GTCCACGCCAACATCAGGCAGTCAGAAAAGCTACGACTGGAGGTCATAAG
GTGAGAACGCACCGAAAGATCTATCCAGCACCACAAGAGGCTTCCAAGAC
TCTGACGACTGTATCTATTAGCAACAATCACTACGAATCTTTTATAAATA
ACATagctttatttttaaaatcctGTAAATTTATAATTCTAAACAAAGAA
ATTATGATATGTTTCATaaactttttctctttaaaCTAAATCTTCGTCTG
AAATTTTCATCGATGCTCAagttgaaaaattgattttccttCTCTTTTTT
TCAAGGTTTAATAATTCTAATTTCTTTACATCTTTACATAAGATGAcaca
gttttgaaaaataaaaaaatttctacttttttaatgaaaagccAAAACTT
CATATATTTGGCATAAAAACacctctgtgtcacagacccgctgggactcc
cagccctactggaaaatttctcaaatatttcGTCCCCAGTGAGAAAATAC
cgtgaaatttcagccccattgagaatttgactttgatttcatccccattc
gagatCCAATGTTTAAGAAtagcactccaaaaccatcccactggattttt
taaccttggaacaatagaatatctatccccattgagatttcaataggaat
ttttatccccatttaggaaaaagttccaccggggctgtgagacaggggtg
tataaaaaCTTGAGATTTAAATAATGAGAGAGTTAAATAATGGTTTAAGT
ACCATTGGAAAGGTACTTTTAAACTATTAAAAAAATCCTTATTCTTTTAC
CTTTTCAATCAAATGTTCATAAAAGTTGCAGCTTTAAGTCTGACTGGGAC
AAGGTAAATTAGGCACTTTTGAAGGGTTTGAAGGGTTAATAATATTGAAC
TATCAAGTtgagaaaaatataatattgcCTTAAAATCCCTGGCAtgaaaa
attttatcattttttacaaatcatGCAAAAATAAGACaccccttctcgca
gacccacTGGGAGCCCTTCGCACTgtaaaaattgtccaaaatatgtcccc
ggtgggaaattatcctccaattttcgACCCACtgataataatcaaataaa
ccattcctcactgcaaaatattatgctatttttcacatccccactgaatt
ctctgtctttataaaacaaaataattgaaatccccagccataaaaaatat
gggaatatcaatccccattgagtttcagtcaattattttttatccccact
ggctaaaaaaagATTACCgcgtctgtgagaagggggtgtataataaagac
aaaaaaaatccCCACCGCCAGAAAACGNgctaaaaaaaatcttaccgcgt
ctgcgagaagggggtgtataataAGGACAAAAAAAATCCCCACCGccaga
aactaaaaaaaatccaTCACTGGATTAATAAAACACAAAGGTCTTATAAA
GAGTGACGGAACAGTAAAAATCTTCAttatttttacacccctgtctcact
caACAAATGAGCTTTAGCCAACCcaagaattttaaaaatataaaacacaa
aaacaaaacaaaagtgctagattcaatctgtcatccGAAAAAAAGCACAA
ATTTTAAGACATCTTTTTTGTTTGCCTAGATAAAGGTTACGGATACCCCT
CTACAATACTGGCCAAAAGTAATGGAATTCCTCGCTTTTTGGTATGAATT
CACAAGTTCCCCTCCCCCCTTATACAATGTTGAATTTCAGTCCAACTTGA
CTCAACAACATTGTAGAGAGAGGGAAGGGGGAGAGGAGTAAAAAAACAGT
AGAATAGATGGGATTCCAATTACATTTGACCAAGATTGTAGCTTTCAGCT
TGAAATTCAATGACTCAACCTCCCCTTGTTGGAAAAATCATCCCCAGTGG
AAATATAACTCTTATGAATTTTACCCAGTTTAGAAATTGAATGTAAAACT
GCACTTCTAAAGAATTCCAGTGGCGTTTTTAGATGGAAATAATAGATTTT
ATCCTATCTTCAATGACTTTGATTAAGATACGAGAAAATGTTCTACTGAG
GACAGTATatgattttttatcaaattttctgtTGCTAGTTGAGGCTAGTT
GAGGTGGATAGATTTTCGAACGTCATGTAATATTTCTAGCTATttgattc
gtcaaaaactagcaTGTAACGCTCAATCCCAACTCACCTAGCCGAGCCAG
CGCGCTTCCATATGAAAAGCCCCTAAGGGATGGAAATACTGTCATTTAAT
CATACTGATAGATTCTGAAGCACTCACAACCATAAAACTCCTCTCTATGC
TTTTTTTTATGTCTAGACTTTGCcggatttttataattttcacttctttg
ttgatattttcagaggttaaccctattcatactaggtttttaggggcggt
tcaaaactaggggggcttttcctgtcaCCCCTTAAActttttgatctagt
gggtctttttggatgaaatttagaaaaaaagacccttGTNAAATAATCTG
AAAAAGACTTATCCGACTTTTTATCTTAGCATACCGTCTGCTTTTTAAAC
GAAGCCACGTATCAATAAAAACTCttacattttttatctttttagctTAA
AGCAGTTGTCCACGCCAACATCAGGCAGTCAGAAAAGCTACGACTGGAGG
TCATAAGGTGAGAACGCACCGAAAGATCTATCCAGCACCACAAGAGGCTT
CCAAGACTCTGACGACTGTATCTATTAGCAACAATCACTACGAATCTTTT
ATAAATAACATagctttatttttaaaatcctGTAAATTTATAATTCTAAA
CAAAGAAATTATGATATGTTTCATaaactttttctctttaaaCTAAATCT
TCGTCTGAAATTTTCATCGATGCTCAagttgaaaaattgattttccttCT
CTTTTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042879XLOC_042879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068751-exon-scaffold_49-1491911889:130931..132352TCONS_00068751-exon-scaffold_49-1491911889:130931..132352Clytia hemisphaericaexon
TCONS_00068751-exon-scaffold_49-1510915933:130931..132352TCONS_00068751-exon-scaffold_49-1510915933:130931..132352Clytia hemisphaericaexon
TCONS_00068751-exon-scaffold_49-1575043694:130931..132352TCONS_00068751-exon-scaffold_49-1575043694:130931..132352Clytia hemisphaericaexon
TCONS_00068751-exon-scaffold_49-1491911889:137226..137540TCONS_00068751-exon-scaffold_49-1491911889:137226..137540Clytia hemisphaericaexon
TCONS_00068751-exon-scaffold_49-1510915933:137226..137540TCONS_00068751-exon-scaffold_49-1510915933:137226..137540Clytia hemisphaericaexon
TCONS_00068751-exon-scaffold_49-1575043694:137226..137540TCONS_00068751-exon-scaffold_49-1575043694:137226..137540Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:130931..137540 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0150944	0	0	0.0417484	0.00795119	15.0259	15.1946	9.55921	9.46886	26.2798	37.0282	77.1684	71.4556	53.3946	145.718	82.4068	83.3445	0.00740615	0.0702238	45.1737	49.7639	57.2067	41.8619	55.871	53.1075	6.85203	1.76369	0.220269	0.203562
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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