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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068732 ID=TCONS_00068732|Name=TCONS_00068732|organism=Clytia hemisphaerica|type=transcript|length=715bp
AGTGcatagttttttcaattttttgcattttttcatCTTGCATTCTTCac
gaaagtaaaaaagaaaaacattggtACACTAAATACATCAACACTAAAAT
CCTTATTCAAAGTAGGATTTTAACGACGTAATTTTAAcaaaatgattgaa
tattgaAACACTGACAATACATCAATATAAAGTTGTTGATAACGTGCTGT
GCCTGTGCAGACGTGACAAAATGTGACATGTGAAGTGATTACGAAATTCG
CTAGCAAACCAAAGTGCAAATACTCGCCCAGGATGCTCGGGAGTAAAAGC
AACACTACATTAAACTGTCTGATATATGATGTCATGAAGGAAAAGCAAGA
AGATTGATTATAGGCAGCTATGGCAACAAATGAATTATGATGGACTTTGT
AGAAATTTGCCAACCTTACTCACTTATCCTTTTCCAGCTTTTACGACAAA
ATTTctctgaagtaaacaaaagaagaaaccaCTTGAGTAAACGTCATGGT
AATGCCATCTCCTAATTAAAGGATTATTGGTGGatatatttacaaaaaac
tACGCCTAACACATTCCTTACTTGGAAATGAGAAGACATAAAGGACTAAG
ATTTATATTAAAAACAAAGGCAGTCGCATTTAACTGTATAGCATACTAAG
ACCAAGGAGTATATTACAACTTTCTAATATACTAAAATATTTGACTCGTA
TTAGGTCGTAGTTTC Run BLAST on NCBI transcript from alignment at scaffold_489:47660..49336- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068732 ID=TCONS_00068732|Name=TCONS_00068732|organism=Clytia hemisphaerica|type=transcript|length=1677bp|location=Sequence derived from alignment at scaffold_489:47660..49336- (Clytia hemisphaerica)
AGTGCATAGTTTTTTCAATTTTTTGCATTTTTTCATCTTGCATTCTTCAC
GAAAGTAAAAAAGAAAAACATTGGTACACTAAATACATCAACACTAAAAT
CCTTATTCAAAGTAGGATTTTAACGACGTAATTTTAACAAAATGATTGAA
TATTGAAACACTGACAATACATCAATATAAAGTTGTTGATAACGTGCTGT
GCCTGTGCAGACGTGACAAAATGTAAGTTTACAATTTTTATTCAGTGTAT
ATTTATTTTATCTATGTCAACAAAAATCATTTTCACATTGGCAATTACAA
AAGCTATAGCTATAGCCCATGCCATGGACAACTTGGCTTTGAACATTTTT
TTTTATTTTGAAACTTTATAATCAGTGGTCAAAGCAGTTTTTTTCTGTGA
GACGGAAAATTTTTTGATAGAGATAATTTGGTATACAGTGACACCTGCAG
GCCCCACCATGGTTGGGGCCGAGGGCCAGAAAATTTTCAGATTTTTTAAC
CCCTAGATTGGCTAAAAAGGCATTAAAATTTATTAATTAAAACAACTCAG
AATGTTCTTAAAATGCCTATCATACAGCGAAAATACACATCTATCTAAAA
TAGGTTGAAAAATAAAAATATATGAACGTCATACTATGTATATACAAGGT
ATATACAAAACATGCTTGAAATCCAATTATTAAAACTTCGATGGAATTAT
TCTAGAGAATAAAATCACTATTTCTTGCTAAATAACCATTTCTAACTGAG
ACGGAAAACTTGACAAAAATTTCTGTGAGACGGAAATCCGTCTAAGACGG
AAGAACTTTGATCACTGTTTATAATGTTTTCTGTTAAAAAATTGGGCTAT
TCCATTTTTAAACCATACAGGTGTATTGACGAACTTTTCCAGGGGGTCTA
AGTCTTGATTTTCCAAGGGGTTTTTGGTCATTTTCAGATTTTCCAAGGGG
GTTATTAAAGCATAAAGGTTTCCAGGGGGTTCTTCCCTCCTAAACTGACA
TCAAAAGTCACTTTCCAGGCCCTTTTTCACAAAATTTCACTTTCCAGGGG
ATAGTTTGCTATCACAAATTTCCAGGGGGGTTAGTGAAAAAAGTTCGTCA
ATACCCCTGTACGATTTTTTTTTGGAATATATTAGTGACCAGAAAATGTT
TTCAAATTTTAAATCGACAATTCAATTTGTTCAGGTGACATGTGAAGTGA
TTACGAAATTCGCTAGCAAACCAAAGTGCAAATACTCGCCCAGGATGCTC
GGGAGTAAAAGCAACACTACATTAAACTGTCTGATATATGATGTCATGAA
GGAAAAGCAAGAAGATTGATTATAGGCAGCTATGGCAACAAATGAATTAT
GATGGACTTTGTAGAAATTTGCCAACCTTACTCACTTATCCTTTTCCAGC
TTTTACGACAAAATTTCTCTGAAGTAAACAAAAGAAGAAACCACTTGAGT
AAACGTCATGGTAATGCCATCTCCTAATTAAAGGATTATTGGTGGATATA
TTTACAAAAAACTACGCCTAACACATTCCTTACTTGGAAATGAGAAGACA
TAAAGGACTAAGATTTATATTAAAAACAAAGGCAGTCGCATTTAACTGTA
TAGCATACTAAGACCAAGGAGTATATTACAACTTTCTAATATACTAAAAT
ATTTGACTCGTATTAGGTCGTAGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068732-exon-scaffold_489-1575043694:49115..49336 | TCONS_00068732-exon-scaffold_489-1575043694:49115..49336 | Clytia hemisphaerica | exon |
| TCONS_00068732-exon-scaffold_489-1575043694:47660..48152 | TCONS_00068732-exon-scaffold_489-1575043694:47660..48152 | Clytia hemisphaerica | exon |
| TCONS_00068732-exon-scaffold_489-1510915933:49115..49336 | TCONS_00068732-exon-scaffold_489-1510915933:49115..49336 | Clytia hemisphaerica | exon |
| TCONS_00068732-exon-scaffold_489-1510915933:47660..48152 | TCONS_00068732-exon-scaffold_489-1510915933:47660..48152 | Clytia hemisphaerica | exon |
| TCONS_00068732-exon-scaffold_489-1491911889:49115..49336 | TCONS_00068732-exon-scaffold_489-1491911889:49115..49336 | Clytia hemisphaerica | exon |
| TCONS_00068732-exon-scaffold_489-1491911889:47660..48152 | TCONS_00068732-exon-scaffold_489-1491911889:47660..48152 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_489 | supercontig | scaffold_489:47660..49336 - |
Blast
The following BLAST results are available for this feature:
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