TCONS_00068721 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068721
Unique NameTCONS_00068721
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1748

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068721 ID=TCONS_00068721|Name=TCONS_00068721|organism=Clytia hemisphaerica|type=transcript|length=1748bp
aatttgataagtacccgggtactttttgggtgggTGGGGAGCCAAGTTTG
TTTAATCAAACAAGTACCCGGGTACTAATTGGGTGGGTcttatttgaatt
ttctttgtaaaGTAAGTACCTTGACTCAATTTTGGTGAGTACTGgatGAT
TgaatgttacaagttctgcgtATACGTGCAGCTGTTGTCATTATTCACTG
ATTGGTGTGATACCATTTACTGTTTTTGAACTAAAGAAGGAACATTCTTT
GCGATAGCTCCGATAATTGGATCAAAAACGAGGAGAAATTTTGTTTAGCC
AATTATGGATAGTCTTCACGAAGTTTCATTGGAACAATGTCTTCCTTGGT
TTAGTATTTTATCTTAAGTGCAGTGGATTCTGGCTTGGAAATGATGTCTA
TTAGGTTCCCGAGAGTATTTTCTCTGAAACAGAAAGTGACTACATGACAT
TAACATGATTGCAATGAAAGAtcagcctttaaagtttgaaacaaaCAAGA
ATAATTTGGCTGTAATTTGGgcaccaaaaaaagtatttaaTTTCGAcctt
cagttttttttaatgtgttatattttattatttacaaCCTATTCTATAAT
ATACAATGTTCTAGGGTTTTTGTTCTCTACCAGTAGATAAGCCTTAAAAA
GTACACGCTTTTCGCACTGCTTTTCTATCCTAATGGCACTTTTGCATGCA
TTGACCAAGTCTAAGAAAATTCAGACTTGTTATATTTCTATCAGCTAAAG
gtgataatgtttttttttttcatactaGGCCTTAcctaaaattgaatttt
tatgttAGAAAAAGTCTAAATTTCAAAGCTAAAATTACATGGAGGCCAGA
TGTTTAATCTTTATTTAAATGTATTGGTTGCGATCTTAATCTTAGATGTC
AGGATTCTAGAGGACAAAACGCTCAATTTTAACAGCCTTTAAATGTAGTA
ATTTCGGAAATAACTGTCATTTATAGTGATATAAattattaaaagttttt
gtATTTTCCTAATCAATAGTCTCCACTATGGAGATTTCCCGTGGATCACA
GAGCGCCTAAATATACCATTGTACTTTTTAAGGCTTGTGTTTTTTAAGGC
TTGTTAACTGGATtatgcagttttttttatctattttgtttttACAATAC
AGATTGAATTTTGGGGTCTAAAGCAAAGGCCTATTGTTAAGAACAATGAC
GAAATAAGAGTATACTGACCCTCAGCGAAAAAAGACTATTCctttaataa
aaaaacatgtaccaggggggggggtcagtactaaaatgtaagacatacat
gagtactaaaaggattttcactaatttttgacatacccccacctatttat
cgaaaatgttattttagtacatatgtactaaaattattttgagcaattta
acatagataccacccattttttgcccttttacgcctttaaatttaccaaa
atggggtcattgttacaaacctagtcgaatttagtgcatcaatctgcaaa
ataatataattttattactgaACTGTGCTGAAttactgtacataaaaata
tttttaaatatttaaaaaattggaaaaattctgaaagatgtCTGaagatt
tttccgaaaattcctgaaaaaaaaatgttaaaaattgttaacaaaatgct
ccattttggctgattttagaacaaaatactaagatttttcaaaaatttct
ttaagggaccaccctttttggtattttagtacacatggtactaaaatt
Run BLAST on NCBI

transcript from alignment at scaffold_488:52383..63444-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068721 ID=TCONS_00068721|Name=TCONS_00068721|organism=Clytia hemisphaerica|type=transcript|length=11062bp|location=Sequence derived from alignment at scaffold_488:52383..63444- (Clytia hemisphaerica)
AATTTGATAAGTACCCGGGTACTTTTTGGGTGGGTGGGGAGCCAAGTTTG
TTTAATCAAACAAGTACCCGGGTACTAATTGGGTGGGTCTTATTTGAATT
TTCTTTGTAAAGTAAGTACCTTGACTCAATTTTGGTGAGTACTGGTGAGT
AGTTTATTTTGTTTTCAAGATAATTTAAGGGCTTTGAGACTTAAGTATTG
CTAAAAACCTGTGACATTTTTTATTCCATCATTGGATGGTTAAAAATAAG
TTACTTCTAGCATAAAATTTGACACGAAGAACAGATAAAAACATGATTCT
GCCATATAAAAATATTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNTAGTAAAGGAAAATTAAAATTAACAGTTATAAGGGTGGGT
TTAATTTTGATGAGTGTAGAATTGAGAAAGATTAATAAGTAATAAATTTA
TTTTTTGTAGGTATACAGAGGTATAGGGTCTAAGAAGGAAAAGTCCTTAA
GTACTCGGGTACTTTTTGGGTTGGTATGGGGTCTAGAAGAGAAAAGTCCT
TAAGTACCCGGGTACTTTTTGGGTGGGTATAGGGTCTAGAAGGGAAAAGT
CATTAAGTACCCGGGTACTTTTTGGGTGGGTATAGGGTCTAGAAGGGAAA
AGTCATTAAGTACCCGGGTACTTATTTGGGTAGGTGGTATGGGTCAAAAA
TTTTTTTAGATAAGTACCCTTTCTAGGCTATGGTTTAGTACCCTGAGGCT
TGACCCCCCCCTGTTAAGGTGTGTGTCCAGGGCTCTTTTGAATTTATCGA
TAGAAATGTTTTTGAGGTTTCTGATGCTCTTTGGCATAGCATTAAAAAAA
GTTTTGCACCTTGCACTGCAAGTGTGCTGTCTCTAAATTTTGATGTTTGG
TTCTTTGGAATTGACAGTGTACACATCCGGCCCAGCCGGGGGTTTTCAGT
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNCAGACATACATTATTCTGTAGCGTTCTCTTCGC
CTTTGAAGTGAGTAAATTTTTGTCTGTTTTAGACACTCCCAATAATTGTT
TGGGGTGCCATTTATCTTTTGTAAGAAGGACTTTTGAATATCTTCAAGTC
TCTGAATGAGCAGGGTGGCCAGCGATACTGGAAATACTTGAAAATACTTG
AATATACTGGAAAAAAATATTGGTAAGACTTGATTATACTGGAGTTTTTG
AAAAAATGCCCATTTTTCCAGTATATACTTGAAAATGATAAATTGGAATA
CTTGAAAATACTTGAATTTCTTTTTTCNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAGAAATAAGAAGTTGAAAAT
TGGGAAAATGTCAATTTTTCAGCAAAGTTTTTGATTTGACTGAATTGACT
AAACTCTTAATTACACAGTTTCTTCGTCTGCTTGAACTGGAAATGTCTTA
AAAGTCTTGAAGTCTGATATTTGAAGAAAATATTTCTGATAGTCTCTAGA
AAACATTCTGGGAATATCGGAACATTTTTTTCTATTACTTAGAATTGCAA
AAGAAATTCTACCCACTTCGCTCGCAACCAAATCTTCTGATTTGACAACC
TTGCTGCGTAAGCTGTTAGTAATAAAATTCTAGAAATTAGANNNNNNNNN
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NNNCTATCAAGATCTTTTTGAAGTAGGACAGCATCTTCTAGAGTTTTGAC
TTCCTTTGTGGCGCGAGTGTCATCAGCGAAGGATTTGAGAAAGCTGTGCA
CCACTTCCTTTCCTTGTCAATATCCCCAATCAATATGAGGAAAATTAAAG
GTCCCAAAACACTACTTTGAGGGACTCCTGAAATGACCTGTTGTGATTCA
GAAGTGACACCATTCACTAGCACTGATTGTTTTCTCTCTGTTAGGAAGGA
CTTAAGCCACTGTAATAATTTTCCATCTATTCCTAGTTTCTTTATTGTTC
GTAGGACAATTGAATGGTCTACTTTGTCAAAAGCCTTTGAAAAATCTAGG
TACACAACATCCGCATTAGCATCTTCGTCCAATATATTTAGTATCAGGTC
ATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GCACAGTCCTTGTACATTAAAAAAAGCAAAGTTGTTGATTATTGGAACTG
AATTGGATTGAAGTTTGCTTGGTGAGGAATTTGCCTGATCATCACACATT
TTAATCTTAAAGTCTTAAAGGTATTTTTTGCCATAAAGCTCACAATGTAA
TTCAAATATGTCAACATCAATGATTGTAATGTAGATGCTTTTATCACCGC
CACCCTGTTCCCATGGCTCCGACTGGGGTTCTAGGTCCCCCCGCCAAATT
AAGGTCCCCCCTGAGAACAAGGTCCCCCCAGCCTGATAAAATTTTAGGTC
CCAGTATAGGGGAAAAAATTTATGGCATTCACAAAGCTCTATTTACATGT
GTGTACACTTTTAGAGAATGCAATAGAATGTCTTCATTTTTGCATTTTAA
CCCTTTAAGTGCCACGGTCATTTTTTTGCTAAGCTTTTAAAAGAAAATCG
CTGGTTCAAACTTTAAAGGCTTATATCTCCAGATCTAGAAGGAGTTAGAA
GCTCGTTTATAGTCCGTTGGATAGCTTAAGAGTCTCCTCTTTCTTTTAGG
GGACTTCGGCGCCGCCCGATTTAGGTGCGGACCTGACTGAATGATAGAAA
GGTGCCGAGTGGTAAAACTTCAAACTAATTCGCTGGATGACAGAATCAAG
TTTCTCAGGGCCAAATTTGGCTTCGCCCTCCTACATAGCCCATGTCTGAT
ATATACGACATTGGCACTTAAAGGGTTCACACTTTGCATGNNNNNNNNNN
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GGGGGGGGTGCGAGCCATGGTTCCTAATTCCGCCACCACTCTTTGTTGCA
TCCAGTATCAATTATCTCTCTTTGAGAGCCAAATATAAAAATTTGAACTT
TCATATTTCCACTCTCATGTCTCAACAAATTTCTTATTATCGAAAGAAAT
GGTTCTTTTTATAATAGGGGTGATGGAGTTGGGATTAGGGGGCAGTGATG
GGGTGGAGCTGGGGCATCTACCTTTTTTAACATCTGTATAGTTTACTGTA
TGATTTTTCACCATAATTGGGTGTCTATAATAGTCCTGGGGTGTCCATAA
TAGGTTAGGGTTAGAGGGTATACTTTAAAGAAGGCAAAATTTTCAATTTT
GATCCTTTATATTGTTGCTTATTCCTGTTGTATGATTGTTGAGGTTTGGA
ATGCTGTTAACCCTTACAGTGCATCTAAAAGATCTTGAAAATCCTACCCA
TAAGGTCGACAGATGCCGTAGGTCAGACCATCCCCCAGGGATTTTTTTAA
ATGACCAAAATTTTGCTCACGTTATAATTAATAAAAAAGTCCGAAATGAG
TCAGAGCAAATTCTGTGTTAAGGTCAATACACTTCACACTTGTCAATATT
ATTAAAAAGTCAATATGCAAAAATTGTTACTATAAATAGATCATAAATGT
TATTGAGCTAATATTGCTAAATATAAAGTAAAAAATTTAATTTAGATGAT
GTTCAAATTTGAGAAAGTGCTCCACTCCATTGTTCGATTATTAAGCGATA
GCAGATTTAAATTGAATTTTTCAATTGAATTTTCATTCATTTTTTCTCCA
AGAGAGTTATAAGATTTCTTCTACAAAGGCCAAGTTTTCCTATTGTTTGC
AATATTACCTATGATATTGGAGGCCCCCCAGCGGACCTTCAATTCACGCA
ATCACGCAAATTGTTTTCCCAAATTCACACATTCATGCAATGTTTTTTCG
CAATTCACACAGTTTTTGTTCACGCAAAGCTTTAATTCACGCATTCACGC
AGCTTTTCTTTAATTTTCACGCATTCACGCAATTGAAAAAGCCCATTCAC
GCATTCACGCAAACCGCTGGGGGGGGGCATATTGAGCAAGTGTAAAGGGC
CCAAATTAAAATAGATAAATATTCTATATATAACTGAATATAATTTAGAT
TATTGATAAGTGTAAGGAAGTAATCAATTCTAGATTTATATCCACATAAT
AGTAACAGGTTTTGAATATTGATTTGATATTGACAAGTGTATCCTTTTTT
GTCTTATTTATTTGAAATTCAACGGTTGTAAATGTTATTTTTGTATGGGC
TATTGCGAAACAACAATTTTTTCATAGTACAGAAGTGTTAACAAGATGGG
GATGGATTAATATTAAAAAAGTTTATGATATTGAAATTTAGAATAGGAAT
CAAGTTACTATCTGGTACTCAAAACGCTGCAAAGTTTAAAAAAATGTTCT
TTCAGTTTCTATTTACTTATCCAATTTTTAAGAATATGAGTTGAAAAGGG
AGCCTTTTTCAATTTGATAGATATTCTACTCTATCTGCTATTTTGAAATT
ATTGGGGGTTACCCCCCCCCCTTCCAAAAATTCATTTGAAATTTCAAACC
CCCGTTCAAACAAATTGAAAATTACAACTTTATTCCATATCTGAAGGACC
CCCCTCCCCCCCACTTTAAATGGCAACCCCTTCTTAGGAAACTGAAAGCA
AAAAGACCCCTCCCCTTACGAAAATCTTTGAAATTCATGACCGCCCCTAG
GATAAGAGGGGAGTAGAAAAACTTGGCTGTCATCCGACTCTGTATATAAT
TGAAATTATTACTAATAGTGACTAATTCTGTTTTCAATATGATAAATATT
TGATTTACTATAAGGTTTAAAAAATTTTGAACGATTATTGTCTCATGAAA
AGTTTTTGATTATATGGAACTGTCAGGAATCATAATTATAGAATTTCTTA
TTTTTTAGGATGATTGAATGTTACAAGTTCTGCGTATACGTGCAGCTGTT
GTCATTATTCACTGATTGGTGTGATACCATTTACTGTTTTTGAACTAAAG
AAGGAACATTCTTTGCGATAGCTCCGATAATTGGATCAAAAACGAGGAGA
AATTTTGTTTAGCCAATTATGGATAGTCTTCACGAAGTTTCATTGGAACA
ATGTCTTCCTTGGTTTAGTATTTTATCTTAAGTGCAGTGGATTCTGGCTT
GGAAATGATGTCTATTAGGTTCCCGAGAGTATTTTCTCTGAAACAGAAAG
TGACTACATGACATTAACATGATTGCAATGAAAGATCAGCCTTTAAAGTT
TGAAACAAACAAGAATAATTTGGCTGTAATTTGGGCACCAAAAAAAGTAT
TTAATTTCGACCTTCAGTTTTTTTTAATGTGTTATATTTTATTATTTACA
ACCTATTCTATAATATACAATGTTCTAGGGTTTTTGTTCTCTACCAGTAG
ATAAGCCTTAAAAAGTACACGCTTTTCGCACTGCTTTTCTATCCTAATGG
CACTTTTGCATGCATTGACCAAGTCTAAGAAAATTCAGACTTGTTATATT
TCTATCAGCTAAAGGTGATAATGTTTTTTTTTTTCATACTAGGCCTTACC
TAAAATTGAATTTTTATGTTAGAAAAAGTCTAAATTTCAAAGCTAAAATT
ACATGGAGGCCAGATGTTTAATCTTTATTTAAATGTATTGGTTGCGATCT
TAATCTTAGATGTCAGGATTCTAGAGGACAAAACGCTCAATTTTAACAGC
CTTTAAATGTAGTAATTTCGGAAATAACTGTCATTTATAGTGATATAAAT
TATTAAAAGTTTTTGTATTTTCCTAATCAATAGTCTCCACTATGGAGATT
TCCCGTGGATCACAGAGCGCCTAAATATACCATTGTACTTTTTAAGGCTT
GTGTTTTTTAAGGCTTGTTAACTGGATTATGCAGTTTTTTTTATCTATTT
TGTTTTTACAATACAGATTGAATTTTGGGGTCTAAAGCAAAGGCCTATTG
TTAAGAACAATGACGAAATAAGAGTATACTGACCCTCAGCGAAAAAAGAC
TATTCCTTTAATAAAAAAACATGTACCAGGGGGGGGGGTCAGTACTAAAA
TGTAAGACATACATGAGTACTAAAAGGATTTTCACTAATTTTTGACATAC
CCCCACCTATTTATCGAAAATGTTATTTTAGTACATATGTACTAAAATTA
TTTTGAGCAATTTAACATAGATACCACCCATTTTTTGCCCTTTTACGCCT
TTAAATTTACCAAAATGGGGTCATTGTTACAAACCTAGTCGAATTTAGTG
CATCAATCTGCAAAATAATATAATTTTATTACTGAACTGTGCTGAATTAC
TGTACATAAAAATATTTTTAAATATTTAAAAAATTGGAAAAATTCTGAAA
GATGTCTGAAGATTTTTCCGAAAATTCCTGAAAAAAAAATGTTAAAAATT
GTTAACAAAATGCTCCATTTTGGCTGATTTTAGAACAAAATACTAAGATT
TTTCAAAAATTTCTTTAAGGGACCACCCTTTTTGGTATTTTAGTACACAT
GGTACTAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042867XLOC_042867Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068721-exon-scaffold_488-1575043694:63301..63444TCONS_00068721-exon-scaffold_488-1575043694:63301..63444Clytia hemisphaericaexon
TCONS_00068721-exon-scaffold_488-1575043694:52383..53986TCONS_00068721-exon-scaffold_488-1575043694:52383..53986Clytia hemisphaericaexon
TCONS_00068721-exon-scaffold_488-1510915933:63301..63444TCONS_00068721-exon-scaffold_488-1510915933:63301..63444Clytia hemisphaericaexon
TCONS_00068721-exon-scaffold_488-1510915933:52383..53986TCONS_00068721-exon-scaffold_488-1510915933:52383..53986Clytia hemisphaericaexon
TCONS_00068721-exon-scaffold_488-1491911889:63301..63444TCONS_00068721-exon-scaffold_488-1491911889:63301..63444Clytia hemisphaericaexon
TCONS_00068721-exon-scaffold_488-1491911889:52383..53986TCONS_00068721-exon-scaffold_488-1491911889:52383..53986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_488supercontigscaffold_488:52383..63444 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3316	18.4937	12.331	18.8656	10.6806	6.47534	11.0658	11.1065	1.57718	0.823983	1.41695	0.539788	0.848273	0.413572	3.68149	3.82144	1.55825	1.17221	1.26707	0.152496	5.23168	2.53115	4.07184	4.6146	7.75262	9.14306	5.94864	3.43127	9.11547	8.0628
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068721 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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