TCONS_00068705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068705
Unique NameTCONS_00068705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068705 ID=TCONS_00068705|Name=TCONS_00068705|organism=Clytia hemisphaerica|type=transcript|length=659bp
GGAAGAACGATACACACTCAGAGAACAAAATATTGACTTGAACGGCTCCT
CCACATTACCCTGGTGTGGATATGCCGATGACTTAGTTCTGTTTCTCACA
AATCACATCTGTCTCAACAATTCTGCAAATTTACTGAACTCtgtattcaa
aaattttggtctGACAATAAACACCTCTAAAACGGAGACAATGATTATCA
ACGGTGAAAACCCAAATACAAATGAATACCCGGCAACCATAATTTCGATT
GATGGCTCTCCgctgaaaaatgttcaaaaattcaaataccTTGGCTGCCA
TATAGACTNCCGATCGATGGCTCTCCGCTGAAGAAtgttcaaaaattcaa
ataccTTGGCTGCCATATAGACTATTTGGAACCAAATTCGGGTAACGTCG
AAATAAATCACAGAATTCAAATTTCATCCGTTAAGTTTAATGAATTATCA
AATTTActacaaaactttcaaatcaaCTTGAAAACGCGTGTAAAATTCTT
GAACAGCTTCGTTCGTAGTAGATTGACCTATGCATGTCAGAATTGGAATA
TCACCCAGAACCAATATGATCGCATTGATGCAACATATCGTATGTTCCTT
AGACGTATGATTCGTAATGGCATGAAACACGTAAACGAAGTGGAGAATGA
TTTTCGAAT
Run BLAST on NCBI

protein sequence of TCONS_00068705-protein

>TCONS_00068705-protein ID=TCONS_00068705-protein|Name=TCONS_00068705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
EERYTLREQNIDLNGSSTLPWCGYADDLVLFLTNHICLNNSANLLNSVFK
NFGLTINTSKTETMIINGENPNTNEYPATIISIDGSPLKNVQKFKYLGCH
IDXRSMALR
Run BLAST on NCBI

transcript from alignment at scaffold_487:149871..150529

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068705 ID=TCONS_00068705|Name=TCONS_00068705|organism=Clytia hemisphaerica|type=transcript|length=659bp|location=Sequence derived from alignment at scaffold_487:149871..150529 (Clytia hemisphaerica)
ATTCGAAAATCATTCTCCACTTCGTTTACGTGTTTCATGCCATTACGAAT
CATACGTCTAAGGAACATACGATATGTTGCATCAATGCGATCATATTGGT
TCTGGGTGATATTCCAATTCTGACATGCATAGGTCAATCTACTACGAACG
AAGCTGTTCAAGAATTTTACACGCGTTTTCAAGttgatttgaaagttttg
tagTAAATTTGATAATTCATTAAACTTAACGGATGAAATTTGAATTCTGT
GATTTATTTCGACGTTACCCGAATTTGGTTCCAAATAGTCTATATGGCAG
CCAAggtatttgaatttttgaacaTTCTTCAGCGGAGAGCCATCGATCGG
NAGTCTATATGGCAGCCAAggtatttgaatttttgaacatttttcagcGG
AGAGCCATCAATCGAAATTATGGTTGCCGGGTATTCATTTGTATTTGGGT
TTTCACCGTTGATAATCATTGTCTCCGTTTTAGAGGTGTTTATTGTCaga
ccaaaatttttgaatacaGAGTTCAGTAAATTTGCAGAATTGTTGAGACA
GATGTGATTTGTGAGAAACAGAACTAAGTCATCGGCATATCCACACCAGG
GTAATGTGGAGGAGCCGTTCAAGTCAATATTTTGTTCTCTGAGTGTGTAT
CGTTCTTCC

Coding sequence (CDS) from alignment at scaffold_487:149871..150529

>TCONS_00068705 ID=TCONS_00068705|Name=TCONS_00068705|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_487:149871..150529 (Clytia hemisphaerica)
TCAGCGGAGAGCCATCGATCGGNAGTCTATATGGCAGCCAAggtatttga
atttttgaacatttttcagcGGAGAGCCATCAATCGAAATTATGGTTGCC
GGGTATTCATTTGTATTTGGGTTTTCACCGTTGATAATCATTGTCTCCGT
TTTAGAGGTGTTTATTGTCagaccaaaatttttgaatacaGAGTTCAGTA
AATTTGCAGAATTGTTGAGACAGATGTGATTTGTGAGAAACAGAACTAAG
TCATCGGCATATCCACACCAGGGTAATGTGGAGGAGCCGTTCAAGTCAAT
ATTTTGTTCTCTGAGTGTGTATCGTTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042862XLOC_042862Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068705-proteinTCONS_00068705-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068705-exon-scaffold_487-1491911889:149871..150529TCONS_00068705-exon-scaffold_487-1491911889:149871..150529Clytia hemisphaericaexon
TCONS_00068705-exon-scaffold_487-1510915933:149871..150529TCONS_00068705-exon-scaffold_487-1510915933:149871..150529Clytia hemisphaericaexon
TCONS_00068705-exon-scaffold_487-1575043694:149871..150529TCONS_00068705-exon-scaffold_487-1575043694:149871..150529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_487supercontigscaffold_487:149871..150529 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.867234	1.23009	1.07119	1.13533	0.637916	0.420075	1.01361	0.37957	0.597928	0.905215	0.479249	0.840106	0.524336	0.980151	0.537212	0.19217	0	0.242649	0.0838081	0.613894	0.0762264	0.780792	0.0903957	0.493097	1.1004	0.528814	0.216209	0.346116	0.350022	0.267463
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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