TCONS_00068702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068702
Unique NameTCONS_00068702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068702 ID=TCONS_00068702|Name=TCONS_00068702|organism=Clytia hemisphaerica|type=transcript|length=425bp
gAGATTTTAAAATTCTCATAAATTTGCTAGTAAAGTCTAAATTACCAAAA
TACTACTTGGCTCTGCTTGGCTTCCCCTTTGcaccattttggctgatttc
attggaaagaaaaaagttaagaaatgTCTGGTGGGCAATGACCTGGCTCT
TGAATCAAGATTGTTTAACCAAGGAGTGTTCCAACAACACAGTGGAGACT
ATATTCCATGCATGTATGCAATCTTTTGGTTTTCACAGAGACAACTGTGC
AATTAAGGAATGATGCAAATTGCTTCTTTTTCGTAAGTTGTGGTTTTTTA
TTACGCTGTTGATTACTTTCATAAGTATAGTGCAGAGGTTGGATTTAGAG
CTGAGGTCATCAGAAGTTAAGGTGAACGTGCTTTGAACTTTGCGGAAAAT
ATGTTATATGCTTAACAGTGCATTG
Run BLAST on NCBI

transcript from alignment at scaffold_487:103680..104237-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068702 ID=TCONS_00068702|Name=TCONS_00068702|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at scaffold_487:103680..104237- (Clytia hemisphaerica)
GAGATTTTAAAATTCTCATAAATTTGCTAGTAAAGTCTAAATTACCAAAA
TACTACTTGGCTCTGCTTGGCTTCCCCTTTGCACCATTTTGGCTGATTTC
ATTGGAAAGAAAAAAGTTAAGAAATGGTGAAAATGCTTGTTTATTTCTAT
CGTAGTGATTATTGATGTAATTTCTTAAGCATATTTTCCGAAGAAATATT
TCTCTGTGACCCACAAAAGAATTTCTATGAAATCCCTTGTTTTTCTCTTA
GATTTTCAGTCTGGTGGGCAATGACCTGGCTCTTGAATCAAGATTGTTTA
ACCAAGGAGTGTTCCAACAACACAGTGGAGACTATATTCCATGCATGTAT
GCAATCTTTTGGTTTTCACAGAGACAACTGTGCAATTAAGGAATGATGCA
AATTGCTTCTTTTTCGTAAGTTGTGGTTTTTTATTACGCTGTTGATTACT
TTCATAAGTATAGTGCAGAGGTTGGATTTAGAGCTGAGGTCATCAGAAGT
TAAGGTGAACGTGCTTTGAACTTTGCGGAAAATATGTTATATGCTTAACA
GTGCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042859XLOC_042859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068702-exon-scaffold_487-1575043694:104112..104237TCONS_00068702-exon-scaffold_487-1575043694:104112..104237Clytia hemisphaericaexon
TCONS_00068702-exon-scaffold_487-1575043694:103680..103978TCONS_00068702-exon-scaffold_487-1575043694:103680..103978Clytia hemisphaericaexon
TCONS_00068702-exon-scaffold_487-1510915933:104112..104237TCONS_00068702-exon-scaffold_487-1510915933:104112..104237Clytia hemisphaericaexon
TCONS_00068702-exon-scaffold_487-1510915933:103680..103978TCONS_00068702-exon-scaffold_487-1510915933:103680..103978Clytia hemisphaericaexon
TCONS_00068702-exon-scaffold_487-1491911889:104112..104237TCONS_00068702-exon-scaffold_487-1491911889:104112..104237Clytia hemisphaericaexon
TCONS_00068702-exon-scaffold_487-1491911889:103680..103978TCONS_00068702-exon-scaffold_487-1491911889:103680..103978Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_487supercontigscaffold_487:103680..104237 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.160168	0	0	0	0	0	0	0.276819	0	0	0	0	0.567217	0.0932659	0.70062	3.57573	4.54966	0.5238	0	6.82862	4.18282	1.31827	1.54093	3.35059	2.20339	0.225218	0.480717	0	0.371477
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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